Wall clock time and date at job start Mon Mar 30 2020 02:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00186 * 2 1 4 4 H 1.48497 * 109.47265 * 269.99934 * 3 2 1 5 5 H 1.48501 * 109.47222 * 30.00428 * 3 2 1 6 6 H 1.48504 * 109.46990 * 149.99924 * 3 2 1 7 7 C 1.37878 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00426 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99618 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.46931 * 179.97438 * 9 7 2 11 11 N 1.30516 * 126.34969 * 269.95439 * 10 9 7 12 12 N 1.28597 * 109.67623 * 180.02562 * 11 10 9 13 13 C 1.30525 * 109.66994 * 359.72278 * 12 11 10 14 14 N 1.35494 * 107.30780 * 0.43869 * 13 12 11 15 15 C 1.46496 * 126.98181 * 179.83633 * 14 13 12 16 16 F 1.39905 * 109.47025 * 359.68564 * 15 14 13 17 17 F 1.39900 * 109.47180 * 239.68932 * 15 14 13 18 18 F 1.39897 * 109.47384 * 119.68543 * 15 14 13 19 19 H 0.97001 * 119.99461 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.47253 * 59.99762 * 9 7 2 21 21 H 1.09000 * 109.46672 * 299.99762 * 9 7 2 22 22 H 1.07996 * 126.34635 * 180.29716 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2302 -3.6446 0.0005 11 7 2.7323 -4.2331 -1.0507 12 7 3.5326 -5.1697 -0.6817 13 6 3.5820 -5.2172 0.6218 14 7 2.7522 -4.2548 1.0920 15 6 2.4797 -3.9347 2.4953 16 9 3.2139 -4.7934 3.3205 17 9 1.1141 -4.0946 2.7534 18 9 2.8510 -2.6106 2.7523 19 1 -0.4849 0.8401 0.0004 20 1 0.6246 -2.5570 -0.8896 21 1 0.6240 -2.5566 0.8903 22 1 4.1728 -5.8990 1.2154 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261023424.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:37 Heat of formation + Delta-G solvation = -81.191323 kcal Electronic energy + Delta-G solvation = -15341.431282 eV Core-core repulsion = 12097.045613 eV Total energy + Delta-G solvation = -3244.385669 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.047 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -51.55916 -49.23272 -49.10867 -44.29962 -35.99699 -35.41976 -33.01390 -29.68618 -27.52982 -25.60199 -23.67523 -22.61265 -20.31862 -20.15981 -19.57232 -18.71073 -16.90340 -16.86654 -16.40884 -15.95624 -15.87203 -15.58324 -15.52172 -15.25567 -15.25394 -14.78725 -14.35697 -13.71328 -12.98633 -12.72586 -12.64748 -12.30951 -12.11831 -11.77711 -11.64434 -10.67200 -10.34090 -8.29481 -6.42551 0.11267 0.43609 1.41620 1.42892 1.52828 1.65242 1.67502 2.38226 2.39099 2.87420 3.04334 3.19725 3.43065 3.99949 4.28305 4.82446 5.07227 5.21097 5.34482 5.60009 5.91542 6.62464 7.26492 7.46668 8.81179 Molecular weight = 221.05amu Principal moments of inertia in cm(-1) A = 0.032356 B = 0.011253 C = 0.009837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.165793 B = 2487.714666 C = 2845.715763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.021 3.979 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.097 3.903 10 C 0.249 3.751 11 N -0.330 5.330 12 N -0.317 5.317 13 C 0.180 3.820 14 N -0.545 5.545 15 C 0.686 3.314 16 F -0.127 7.127 17 F -0.149 7.149 18 F -0.145 7.145 19 H 0.271 0.729 20 H 0.041 0.959 21 H 0.037 0.963 22 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.287 -7.524 8.611 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.179 4.179 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.572 4.572 8 H 0.069 0.931 9 C 0.058 3.942 10 C -0.017 4.017 11 N -0.165 5.165 12 N -0.151 5.151 13 C -0.106 4.106 14 N -0.254 5.254 15 C 0.549 3.451 16 F -0.109 7.109 17 F -0.131 7.131 18 F -0.126 7.126 19 H 0.080 0.920 20 H 0.059 0.941 21 H 0.056 0.944 22 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 5.416 -7.782 7.155 11.878 hybrid contribution -0.100 1.135 1.359 1.773 sum 5.316 -6.647 8.514 12.038 Atomic orbital electron populations 1.70017 1.07342 1.28555 1.49619 1.25720 0.95737 1.02635 0.93830 0.85447 0.78640 0.78463 0.78559 1.19928 1.19932 1.19204 1.20960 0.92756 0.90171 1.53270 0.93069 1.17811 0.90654 0.86583 0.99199 1.25957 0.98194 0.96831 0.80767 1.74326 1.11167 1.07148 1.23904 1.74155 1.15834 1.14978 1.10085 1.27503 0.96030 0.93947 0.93100 1.47732 1.39365 1.31605 1.06652 1.17589 0.75251 0.75430 0.76787 1.93315 1.76842 1.69717 1.71004 1.93324 1.31148 1.95236 1.93384 1.93396 1.91137 1.34804 1.93295 0.91981 0.94111 0.94447 0.70421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.68 13.29 21.45 0.28 -51.40 14 2 C 0.02 1.16 5.46 84.66 0.46 1.62 14 3 Si 0.96 42.53 29.54 68.60 2.03 44.56 14 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 14 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 14 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 14 7 C -0.53 -28.90 9.09 25.60 0.23 -28.67 14 8 H 0.05 2.81 7.74 -2.91 -0.02 2.78 14 9 C 0.10 4.91 5.33 29.10 0.16 5.06 14 10 C 0.25 11.08 7.16 137.98 0.99 12.07 14 11 N -0.33 -15.20 12.21 -50.15 -0.61 -15.81 14 12 N -0.32 -12.30 12.21 -59.99 -0.73 -13.03 14 13 C 0.18 5.33 12.20 180.11 2.20 7.53 14 14 N -0.55 -19.11 3.00 -534.34 -1.61 -20.72 14 15 C 0.69 20.82 3.61 127.77 0.46 21.28 14 16 F -0.13 -2.80 16.73 44.97 0.75 -2.05 14 17 F -0.15 -4.72 16.67 44.97 0.75 -3.97 14 18 F -0.14 -5.07 17.48 44.97 0.79 -4.29 14 19 H 0.27 14.32 8.31 -92.71 -0.77 13.55 14 20 H 0.04 2.23 8.14 -2.39 -0.02 2.21 14 21 H 0.04 1.91 7.19 -2.39 -0.02 1.89 14 22 H 0.28 4.47 7.95 -2.91 -0.02 4.44 14 Total: -1.00 -63.22 224.63 7.41 -55.81 By element: Atomic # 1 Polarization: -9.27 SS G_CDS: 1.27 Total: -8.00 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: 4.50 Total: 18.89 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -2.67 Total: -100.95 kcal Atomic # 9 Polarization: -12.59 SS G_CDS: 2.29 Total: -10.31 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -63.22 7.41 -55.81 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023424.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.385 kcal (2) G-P(sol) polarization free energy of solvation -63.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds