Wall clock time and date at job start Mon Mar 30 2020 02:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48498 * 109.47328 * 270.00382 * 3 2 1 5 5 H 1.48503 * 109.46948 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47189 * 150.00356 * 3 2 1 7 7 C 1.37876 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00120 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00076 * 359.97438 * 7 2 1 10 10 C 1.50695 * 109.47269 * 179.97438 * 9 7 2 11 11 N 1.30834 * 125.96516 * 305.02750 * 10 9 7 12 12 C 1.33233 * 109.82996 * 179.73851 * 11 10 9 13 13 C 1.50702 * 125.52643 * 179.97438 * 12 11 10 14 14 F 1.39899 * 109.47466 * 104.99690 * 13 12 11 15 15 F 1.39900 * 109.47209 * 224.99516 * 13 12 11 16 16 F 1.39900 * 109.47069 * 344.99681 * 13 12 11 17 17 N 1.30708 * 108.95078 * 359.97438 * 12 11 10 18 18 N 1.34429 * 125.95883 * 124.71774 * 10 9 7 19 19 H 0.97003 * 126.82753 * 0.26347 * 18 10 9 20 20 H 0.97003 * 119.99852 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.46746 * 60.00324 * 9 7 2 22 22 H 1.08996 * 109.47307 * 300.00745 * 9 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0018 11 7 3.1911 -3.8331 -0.8698 12 6 3.8650 -4.9411 -0.5643 13 6 5.0412 -5.4898 -1.3302 14 9 6.2195 -5.2370 -0.6196 15 9 4.8853 -6.8698 -1.4987 16 9 5.1109 -4.8719 -2.5834 17 7 3.3407 -5.4750 0.5073 18 7 2.2731 -4.6476 0.8921 19 1 1.6838 -4.7746 1.6521 20 1 -0.4850 0.8401 0.0004 21 1 0.6242 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8896 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261071648.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:44 Heat of formation + Delta-G solvation = -75.542834 kcal Electronic energy + Delta-G solvation = -14641.230880 eV Core-core repulsion = 11397.090147 eV Total energy + Delta-G solvation = -3244.140733 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.047 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -50.02445 -47.58099 -47.49184 -41.88744 -33.83887 -32.60139 -31.62521 -28.42112 -26.66713 -23.82960 -21.64541 -20.47117 -18.45586 -18.40235 -17.74816 -16.93200 -16.54916 -15.10488 -14.76856 -14.35289 -14.31179 -13.95042 -13.65802 -13.65020 -13.27536 -12.59887 -12.39265 -12.14683 -11.66661 -10.92947 -10.84528 -10.15259 -10.12640 -9.82190 -9.71719 -9.11904 -8.60069 -6.26034 -4.29588 1.66744 2.28348 2.97939 3.04354 3.25018 3.31358 3.36450 3.64982 4.11884 4.32205 4.49386 5.06033 5.18049 5.47317 6.18630 6.39087 6.92146 7.06008 7.33732 7.72103 7.94208 8.30075 8.74070 9.35784 10.84839 Molecular weight = 221.05amu Principal moments of inertia in cm(-1) A = 0.042136 B = 0.007586 C = 0.006902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.360748 B = 3690.106199 C = 4055.542359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.906 3.094 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.087 3.913 10 C 0.345 3.655 11 N -0.507 5.507 12 C 0.132 3.868 13 C 0.577 3.423 14 F -0.166 7.166 15 F -0.167 7.167 16 F -0.153 7.153 17 N -0.287 5.287 18 N -0.476 5.476 19 H 0.444 0.556 20 H 0.266 0.734 21 H 0.064 0.936 22 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.124 -8.757 0.128 10.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.048 3.952 10 C 0.070 3.930 11 N -0.236 5.236 12 C -0.153 4.153 13 C 0.520 3.480 14 F -0.148 7.148 15 F -0.148 7.148 16 F -0.135 7.135 17 N -0.120 5.120 18 N -0.194 5.194 19 H 0.291 0.709 20 H 0.076 0.924 21 H 0.082 0.918 22 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.367 -9.102 0.119 10.567 hybrid contribution 0.058 0.821 0.465 0.945 sum 5.425 -8.281 0.584 9.917 Atomic orbital electron populations 1.69920 1.06058 1.27515 1.49646 1.24956 0.94971 0.99560 0.94538 0.86360 0.79646 0.82225 0.78499 1.20222 1.21088 1.19715 1.20870 0.93540 0.88649 1.52281 0.91514 1.18230 0.90458 0.86265 1.00281 1.25892 0.94086 0.90007 0.83059 1.70444 1.08490 1.15621 1.29027 1.23627 0.99773 0.95824 0.96038 1.16323 0.79691 0.75047 0.76979 1.93237 1.49146 1.93916 1.78484 1.93225 1.95567 1.30578 1.95464 1.93259 1.96290 1.82548 1.41364 1.77773 1.02343 1.16981 1.14895 1.48221 1.25695 1.19427 1.26090 0.70919 0.92413 0.91788 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.32 13.29 55.43 0.74 -23.58 14 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 14 3 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 14 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 14 5 H -0.29 -6.40 7.11 56.52 0.40 -5.99 14 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 14 7 C -0.51 -13.46 9.07 -34.44 -0.31 -13.77 14 8 H 0.07 1.80 7.74 -52.49 -0.41 1.39 14 9 C 0.09 2.00 5.60 -29.04 -0.16 1.83 14 10 C 0.35 7.18 7.45 -155.69 -1.16 6.02 14 11 N -0.51 -11.13 10.96 -8.16 -0.09 -11.22 14 12 C 0.13 2.59 7.40 -156.86 -1.16 1.42 14 13 C 0.58 9.71 3.57 36.01 0.13 9.83 14 14 F -0.17 -2.69 17.30 2.25 0.04 -2.66 14 15 F -0.17 -2.58 17.30 2.25 0.04 -2.54 14 16 F -0.15 -2.61 17.16 2.25 0.04 -2.57 14 17 N -0.29 -5.33 12.80 32.42 0.41 -4.92 14 18 N -0.48 -8.28 7.45 32.62 0.24 -8.04 14 19 H 0.44 5.90 8.96 -182.33 -1.63 4.26 14 20 H 0.27 6.88 8.31 -40.82 -0.34 6.54 14 21 H 0.06 1.54 8.14 -51.93 -0.42 1.12 14 22 H 0.05 1.04 8.14 -51.93 -0.42 0.62 14 LS Contribution 226.96 15.07 3.42 3.42 Total: -1.00 -28.35 226.96 -4.96 -33.32 By element: Atomic # 1 Polarization: -1.75 SS G_CDS: -2.02 Total: -3.77 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -2.76 Total: 6.89 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 1.30 Total: -47.76 kcal Atomic # 9 Polarization: -7.88 SS G_CDS: 0.12 Total: -7.77 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -28.35 -4.96 -33.32 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261071648.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.224 kcal (2) G-P(sol) polarization free energy of solvation -28.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds