Wall clock time and date at job start Mon Mar 30 2020 02:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31436 * 1 3 3 Si 1.86794 * 120.00245 * 2 1 4 4 H 1.48497 * 109.47323 * 269.99932 * 3 2 1 5 5 H 1.48495 * 109.47187 * 30.00400 * 3 2 1 6 6 H 1.48501 * 109.46847 * 150.00031 * 3 2 1 7 7 C 1.38862 * 119.99473 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99568 * 159.70445 * 7 2 1 9 9 N 1.37354 * 119.99947 * 339.69601 * 7 2 1 10 10 C 1.37136 * 126.41517 * 146.41315 * 9 7 2 11 11 N 1.37948 * 125.10209 * 0.07696 * 10 9 7 12 12 N 1.30883 * 109.80006 * 180.31715 * 10 9 7 13 13 C 1.36081 * 109.68423 * 359.77933 * 12 10 9 14 14 C 1.38700 * 126.42209 * 326.36536 * 9 7 2 15 15 C 1.38655 * 133.84948 * 359.97438 * 14 9 7 16 16 C 1.38063 * 119.89055 * 179.68159 * 15 14 9 17 17 C 1.38621 * 120.42671 * 0.02640 * 16 15 14 18 18 C 1.38038 * 120.46799 * 359.95391 * 17 16 15 19 19 F 1.35095 * 120.12676 * 180.02562 * 18 17 16 20 20 H 0.96999 * 119.99672 * 356.96148 * 1 2 3 21 21 H 0.97000 * 120.00240 * 174.88560 * 11 10 9 22 22 H 0.97000 * 119.99836 * 354.88540 * 11 10 9 23 23 H 1.07999 * 120.05236 * 359.66450 * 15 14 9 24 24 H 1.07993 * 119.78397 * 180.02562 * 16 15 14 25 25 H 1.08001 * 119.76483 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6176 0.0000 4 1 2.4960 2.0463 -1.4000 5 1 1.4460 2.6526 0.7001 6 1 3.5459 1.4400 0.7000 7 6 2.0086 -1.2026 -0.0005 8 1 3.0383 -1.2316 -0.3250 9 7 1.3857 -2.3553 0.4117 10 6 1.6044 -3.6181 -0.0763 11 7 2.5008 -3.9385 -1.0747 12 7 0.8314 -4.4731 0.5438 13 6 0.0746 -3.8206 1.4675 14 6 0.4183 -2.4604 1.4001 15 6 -0.2023 -1.5462 2.2378 16 6 -1.1579 -1.9755 3.1370 17 6 -1.5019 -3.3164 3.2093 18 6 -0.8946 -4.2403 2.3828 19 9 -1.2354 -5.5453 2.4587 20 1 -0.4849 0.8389 0.0445 21 1 2.6504 -4.8668 -1.3127 22 1 2.9815 -3.2353 -1.5388 23 1 0.0616 -0.5002 2.1870 24 1 -1.6406 -1.2619 3.7883 25 1 -2.2506 -3.6405 3.9170 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261162700.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:44 Heat of formation + Delta-G solvation = 9.623434 kcal Electronic energy + Delta-G solvation = -14674.497792 eV Core-core repulsion = 11988.279675 eV Total energy + Delta-G solvation = -2686.218116 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.066 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.55534 -42.51580 -37.95037 -36.00230 -34.58378 -33.00956 -30.49005 -29.09433 -27.11002 -23.41357 -23.14923 -21.68824 -19.89913 -18.85774 -17.69681 -17.39010 -16.78345 -16.44808 -16.39170 -15.99643 -15.80007 -15.60552 -14.79236 -13.88566 -13.66859 -13.17671 -13.04562 -12.63500 -12.49430 -12.37616 -12.14715 -11.49622 -10.79375 -10.71848 -10.61577 -9.01604 -8.44894 -8.26123 -6.41777 0.28238 0.82632 1.39549 1.43931 1.55942 2.03483 2.26994 2.40461 2.88126 3.06033 3.13389 3.61816 4.05196 4.23354 4.65908 4.75848 4.80839 5.07877 5.16698 5.43054 5.51227 5.70724 5.83355 6.11753 6.15900 6.40933 6.69076 6.81012 7.51925 7.60509 8.43973 Molecular weight = 221.07amu Principal moments of inertia in cm(-1) A = 0.031883 B = 0.012120 C = 0.009112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.987857 B = 2309.675221 C = 3072.270039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.017 3.983 3 Si 1.000 3.000 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.116 0.884 9 N -0.336 5.336 10 C 0.474 3.526 11 N -0.815 5.815 12 N -0.595 5.595 13 C -0.012 4.012 14 C 0.050 3.950 15 C -0.074 4.074 16 C -0.120 4.120 17 C -0.156 4.156 18 C 0.086 3.914 19 F -0.153 7.153 20 H 0.284 0.716 21 H 0.422 0.578 22 H 0.416 0.584 23 H 0.114 0.886 24 H 0.162 0.838 25 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 1.530 2.297 3.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.193 4.193 3 Si 0.820 3.180 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.184 1.184 7 C -0.515 4.515 8 H 0.133 0.867 9 N -0.016 5.016 10 C 0.119 3.881 11 N -0.372 5.372 12 N -0.328 5.328 13 C -0.135 4.135 14 C -0.064 4.064 15 C -0.096 4.096 16 C -0.141 4.141 17 C -0.177 4.177 18 C 0.064 3.936 19 F -0.131 7.131 20 H 0.094 0.906 21 H 0.254 0.746 22 H 0.247 0.753 23 H 0.132 0.868 24 H 0.179 0.821 25 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.591 0.910 2.048 2.748 hybrid contribution 0.503 1.061 -0.563 1.302 sum 2.094 1.971 1.485 3.236 Atomic orbital electron populations 1.70198 1.07966 1.30341 1.40205 1.26447 0.95966 1.03437 0.93421 0.84869 0.78444 0.75501 0.79158 1.19017 1.19609 1.18362 1.19949 0.97466 0.84171 1.49934 0.86653 1.41183 1.30096 1.05806 1.24495 1.20042 0.93566 0.82239 0.92240 1.40557 1.46394 1.11837 1.38408 1.70403 1.15250 1.30755 1.16433 1.18965 1.01832 0.91653 1.01017 1.18657 0.98337 0.94426 0.94989 1.20238 0.96888 0.97888 0.94540 1.20850 0.98168 0.95200 0.99874 1.20886 1.03076 0.92526 1.01228 1.16968 0.98768 0.78198 0.99644 1.91349 1.91423 1.34582 1.95790 0.90586 0.74556 0.75259 0.86781 0.82060 0.81980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.40 10.62 21.65 0.23 -43.17 15 2 C 0.02 0.78 4.52 84.90 0.38 1.16 15 3 Si 1.00 36.21 29.60 68.60 2.03 38.24 15 4 H -0.27 -9.28 7.11 99.48 0.71 -8.57 15 5 H -0.27 -9.59 7.11 99.48 0.71 -8.89 15 6 H -0.26 -9.14 7.11 99.48 0.71 -8.43 15 7 C -0.39 -19.21 9.52 83.98 0.80 -18.41 15 8 H 0.12 5.20 7.77 -2.91 -0.02 5.18 15 9 N -0.34 -17.57 2.88 -344.46 -0.99 -18.56 15 10 C 0.47 23.26 8.91 260.24 2.32 25.58 15 11 N -0.81 -29.89 9.03 -58.19 -0.53 -30.41 15 12 N -0.59 -31.36 11.31 -189.76 -2.15 -33.50 15 13 C -0.01 -0.65 7.20 39.39 0.28 -0.37 15 14 C 0.05 2.64 6.16 38.70 0.24 2.88 15 15 C -0.07 -3.47 8.55 22.33 0.19 -3.28 15 16 C -0.12 -4.56 10.03 22.32 0.22 -4.34 15 17 C -0.16 -5.93 10.00 22.31 0.22 -5.71 15 18 C 0.09 3.99 7.34 22.59 0.17 4.15 15 19 F -0.15 -6.91 17.27 44.97 0.78 -6.13 15 20 H 0.28 13.26 8.31 -92.71 -0.77 12.48 15 21 H 0.42 12.90 8.95 -92.71 -0.83 12.07 15 22 H 0.42 13.47 8.37 -92.71 -0.78 12.69 15 23 H 0.11 5.39 6.26 -2.91 -0.02 5.38 15 24 H 0.16 4.65 8.06 -2.91 -0.02 4.63 15 25 H 0.16 4.74 8.06 -2.91 -0.02 4.72 15 Total: -1.00 -64.46 230.05 3.86 -60.61 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: -0.34 Total: 31.26 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 4.83 Total: 1.67 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -3.44 Total: -125.64 kcal Atomic # 9 Polarization: -6.91 SS G_CDS: 0.78 Total: -6.13 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 2.03 Total: 38.24 kcal Total: -64.46 3.86 -60.61 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261162700.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.229 kcal (2) G-P(sol) polarization free energy of solvation -64.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds