Wall clock time and date at job start Mon Mar 30 2020 02:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31000 * 1 3 3 Si 1.86798 * 119.99888 * 2 1 4 4 H 1.48504 * 109.46950 * 269.99845 * 3 2 1 5 5 H 1.48497 * 109.47421 * 29.99970 * 3 2 1 6 6 H 1.48498 * 109.47213 * 150.00078 * 3 2 1 7 7 C 1.39910 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99447 * 179.97438 * 7 2 1 9 9 C 1.39910 * 120.00377 * 359.97438 * 7 2 1 10 10 N 1.38885 * 126.97052 * 359.97438 * 9 7 2 11 11 H 0.96991 * 126.58496 * 359.75302 * 10 9 7 12 12 C 1.36261 * 106.83017 * 180.02562 * 10 9 7 13 13 N 1.37468 * 125.35260 * 179.97438 * 12 10 9 14 14 N 1.31951 * 109.29970 * 0.02562 * 12 10 9 15 15 C 1.32900 * 110.01794 * 359.97438 * 14 12 10 16 16 C 1.50702 * 126.10033 * 180.02562 * 15 14 12 17 17 F 1.39898 * 109.47368 * 270.00280 * 16 15 14 18 18 F 1.39901 * 109.47102 * 30.00276 * 16 15 14 19 19 F 1.39900 * 109.47178 * 150.00527 * 16 15 14 20 20 H 0.96996 * 120.00120 * 0.02562 * 1 2 3 21 21 H 0.97004 * 119.99890 * 359.97438 * 13 12 10 22 22 H 0.96998 * 120.00751 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2440 1.6177 0.0000 4 1 2.4915 2.0464 -1.4001 5 1 1.4415 2.6527 0.7000 6 1 3.5415 1.4402 0.7000 7 6 2.0095 -1.2117 -0.0005 8 1 3.0895 -1.2116 -0.0010 9 6 1.3100 -2.4234 -0.0005 10 7 -0.0686 -2.5920 0.0005 11 1 -0.7369 -1.8891 0.0046 12 6 -0.3018 -3.9345 0.0006 13 7 -1.5427 -4.5262 0.0020 14 7 0.8505 -4.5773 0.0003 15 6 1.8561 -3.7085 -0.0006 16 6 3.3241 -4.0494 -0.0017 17 9 3.7794 -4.1548 1.3169 18 9 3.5194 -5.2676 -0.6612 19 9 4.0362 -3.0423 -0.6618 20 1 -0.4850 0.8400 -0.0004 21 1 -2.3420 -3.9766 0.0034 22 1 -1.6190 -5.4931 0.0016 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261254040.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:46 Heat of formation + Delta-G solvation = -114.401652 kcal Electronic energy + Delta-G solvation = -15253.804729 eV Core-core repulsion = 12007.978952 eV Total energy + Delta-G solvation = -3245.825777 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.047 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.81564 -46.36802 -46.32829 -39.97895 -34.21428 -33.07726 -30.75577 -28.75658 -26.10594 -23.13390 -20.33850 -19.55045 -18.28915 -17.23251 -17.06807 -16.71392 -15.68846 -15.01711 -14.55281 -13.74723 -13.66818 -13.20565 -13.18110 -12.84169 -12.72148 -12.58615 -12.55613 -11.77898 -11.46479 -11.07329 -10.67538 -10.45645 -10.03729 -9.24483 -8.57364 -8.56592 -7.17699 -6.81252 -4.47359 2.79014 2.96653 3.03366 3.52005 3.76174 4.02243 4.16849 4.30098 4.96418 5.02110 5.51654 5.68074 5.91285 6.72801 6.96880 7.28547 7.52423 7.76081 8.10945 8.27937 8.56408 8.60957 9.34307 9.65448 9.90371 Molecular weight = 221.05amu Principal moments of inertia in cm(-1) A = 0.024976 B = 0.014119 C = 0.009557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.821745 B = 1982.619637 C = 2928.958314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.069 3.931 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.257 1.257 7 C -0.432 4.432 8 H 0.107 0.893 9 C 0.258 3.742 10 N -0.590 5.590 11 H 0.425 0.575 12 C 0.392 3.608 13 N -0.853 5.853 14 N -0.499 5.499 15 C -0.261 4.261 16 C 0.570 3.430 17 F -0.198 7.198 18 F -0.193 7.193 19 F -0.184 7.184 20 H 0.290 0.710 21 H 0.394 0.606 22 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.985 -0.044 -0.055 0.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.146 4.146 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.181 1.181 7 C -0.467 4.467 8 H 0.125 0.875 9 C 0.141 3.859 10 N -0.214 5.214 11 H 0.272 0.728 12 C 0.039 3.961 13 N -0.409 5.409 14 N -0.227 5.227 15 C -0.384 4.384 16 C 0.515 3.485 17 F -0.179 7.179 18 F -0.174 7.174 19 F -0.165 7.165 20 H 0.101 0.899 21 H 0.222 0.778 22 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.839 -0.756 -0.053 1.131 hybrid contribution -0.413 1.687 0.002 1.737 sum -1.252 0.931 -0.052 1.561 Atomic orbital electron populations 1.68953 1.07882 1.30378 1.39953 1.26045 0.94929 1.02344 0.91245 0.85816 0.80139 0.78588 0.79479 1.19111 1.20134 1.18071 1.19069 0.95802 0.87802 1.44037 0.87470 1.18145 0.80641 0.93130 0.94021 1.43633 1.08228 1.05881 1.63640 0.72759 1.18844 0.87380 0.80729 1.09196 1.40185 1.01624 1.08615 1.90474 1.69057 0.95296 1.32579 1.25789 1.19435 0.90200 0.90489 1.38245 1.16879 0.86388 0.72654 0.72538 1.93111 1.90994 1.95914 1.37910 1.93071 1.96177 1.46726 1.81450 1.93082 1.80775 1.61329 1.81332 0.89916 0.77817 0.76472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.59 10.78 55.55 0.60 -19.00 14 2 C 0.07 1.63 5.50 -17.28 -0.09 1.53 14 3 Si 0.94 17.97 29.56 -169.99 -5.03 12.94 14 4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 14 5 H -0.28 -5.14 7.11 56.52 0.40 -4.74 14 6 H -0.26 -4.94 7.11 56.52 0.40 -4.54 14 7 C -0.43 -11.14 8.77 -38.33 -0.34 -11.48 14 8 H 0.11 2.70 6.17 -52.49 -0.32 2.38 14 9 C 0.26 6.90 6.72 -83.52 -0.56 6.34 14 10 N -0.59 -14.48 5.89 -10.96 -0.06 -14.54 14 11 H 0.43 9.96 6.45 -40.82 -0.26 9.69 14 12 C 0.39 9.19 9.36 -319.82 -2.99 6.20 14 13 N -0.85 -14.85 9.02 30.17 0.27 -14.57 14 14 N -0.50 -12.99 11.15 -9.27 -0.10 -13.10 14 15 C -0.26 -6.96 6.56 -81.61 -0.54 -7.50 14 16 C 0.57 14.00 3.49 36.01 0.13 14.13 14 17 F -0.20 -4.71 17.30 2.25 0.04 -4.67 14 18 F -0.19 -4.57 17.26 2.25 0.04 -4.53 14 19 F -0.18 -4.33 15.03 2.25 0.03 -4.30 14 20 H 0.29 6.11 8.30 -40.82 -0.34 5.78 14 21 H 0.39 5.68 8.95 -40.82 -0.37 5.32 14 22 H 0.41 6.24 8.95 -40.82 -0.37 5.87 14 LS Contribution 216.53 15.07 3.26 3.26 Total: -1.00 -28.37 216.53 -5.79 -34.17 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -0.45 Total: 15.11 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: -4.39 Total: 9.23 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: 0.70 Total: -61.21 kcal Atomic # 9 Polarization: -13.61 SS G_CDS: 0.11 Total: -13.50 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -28.37 -5.79 -34.17 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254040.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.234 kcal (2) G-P(sol) polarization free energy of solvation -28.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds