Wall clock time and date at job start Mon Mar 30 2020 02:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31000 * 1 3 3 Si 1.86798 * 119.99888 * 2 1 4 4 H 1.48504 * 109.46950 * 269.99845 * 3 2 1 5 5 H 1.48497 * 109.47421 * 29.99970 * 3 2 1 6 6 H 1.48498 * 109.47213 * 150.00078 * 3 2 1 7 7 C 1.39910 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99447 * 179.97438 * 7 2 1 9 9 C 1.39910 * 120.00377 * 359.97438 * 7 2 1 10 10 N 1.38885 * 126.97052 * 359.97438 * 9 7 2 11 11 H 0.96991 * 126.58496 * 359.75302 * 10 9 7 12 12 C 1.36261 * 106.83017 * 180.02562 * 10 9 7 13 13 N 1.37468 * 125.35260 * 179.97438 * 12 10 9 14 14 N 1.31951 * 109.29970 * 0.02562 * 12 10 9 15 15 C 1.32900 * 110.01794 * 359.97438 * 14 12 10 16 16 C 1.50702 * 126.10033 * 180.02562 * 15 14 12 17 17 F 1.39898 * 109.47368 * 270.00280 * 16 15 14 18 18 F 1.39901 * 109.47102 * 30.00276 * 16 15 14 19 19 F 1.39900 * 109.47178 * 150.00527 * 16 15 14 20 20 H 0.96996 * 120.00120 * 0.02562 * 1 2 3 21 21 H 0.97004 * 119.99890 * 359.97438 * 13 12 10 22 22 H 0.96998 * 120.00751 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2440 1.6177 0.0000 4 1 2.4915 2.0464 -1.4001 5 1 1.4415 2.6527 0.7000 6 1 3.5415 1.4402 0.7000 7 6 2.0095 -1.2117 -0.0005 8 1 3.0895 -1.2116 -0.0010 9 6 1.3100 -2.4234 -0.0005 10 7 -0.0686 -2.5920 0.0005 11 1 -0.7369 -1.8891 0.0046 12 6 -0.3018 -3.9345 0.0006 13 7 -1.5427 -4.5262 0.0020 14 7 0.8505 -4.5773 0.0003 15 6 1.8561 -3.7085 -0.0006 16 6 3.3241 -4.0494 -0.0017 17 9 3.7794 -4.1548 1.3169 18 9 3.5194 -5.2676 -0.6612 19 9 4.0362 -3.0423 -0.6618 20 1 -0.4850 0.8400 -0.0004 21 1 -2.3420 -3.9766 0.0034 22 1 -1.6190 -5.4931 0.0016 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254040.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:46 Heat of formation + Delta-G solvation = -131.956780 kcal Electronic energy + Delta-G solvation = -15254.565976 eV Core-core repulsion = 12007.978952 eV Total energy + Delta-G solvation = -3246.587025 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.047 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -50.72154 -48.26576 -48.23396 -41.84711 -36.00498 -34.75760 -32.64190 -30.60363 -28.00371 -25.00674 -22.18490 -21.41849 -20.15768 -19.14288 -18.96678 -18.49900 -17.40709 -16.74078 -16.18147 -15.58047 -15.54435 -15.09393 -15.03125 -14.74395 -14.50838 -14.46173 -14.45014 -13.53598 -13.04945 -12.96284 -12.51806 -12.02483 -11.70955 -10.93502 -10.48822 -10.47993 -8.95697 -8.63490 -6.36467 1.15613 1.41729 1.55778 1.79636 2.10310 2.17744 2.43184 2.47529 3.07160 3.18432 3.62636 3.94053 3.99234 4.88803 5.15347 5.42606 5.63369 6.05680 6.35676 6.50108 6.71451 6.96563 7.53435 7.86405 8.13905 Molecular weight = 221.05amu Principal moments of inertia in cm(-1) A = 0.024976 B = 0.014119 C = 0.009557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.821745 B = 1982.619637 C = 2928.958314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.036 3.964 3 Si 1.004 2.996 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.260 1.260 7 C -0.463 4.463 8 H 0.103 0.897 9 C 0.234 3.766 10 N -0.593 5.593 11 H 0.428 0.572 12 C 0.402 3.598 13 N -0.829 5.829 14 N -0.530 5.530 15 C -0.297 4.297 16 C 0.573 3.427 17 F -0.196 7.196 18 F -0.190 7.190 19 F -0.180 7.180 20 H 0.303 0.697 21 H 0.411 0.589 22 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.641 1.094 -0.062 1.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.178 4.178 3 Si 0.824 3.176 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.183 1.183 7 C -0.497 4.497 8 H 0.121 0.879 9 C 0.116 3.884 10 N -0.219 5.219 11 H 0.276 0.724 12 C 0.046 3.954 13 N -0.389 5.389 14 N -0.261 5.261 15 C -0.418 4.418 16 C 0.518 3.482 17 F -0.178 7.178 18 F -0.171 7.171 19 F -0.162 7.162 20 H 0.114 0.886 21 H 0.242 0.758 22 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -1.536 0.357 -0.061 1.579 hybrid contribution -0.332 1.333 0.002 1.374 sum -1.869 1.690 -0.058 2.521 Atomic orbital electron populations 1.68934 1.08727 1.32021 1.38224 1.26888 0.95826 1.04997 0.90064 0.84821 0.78730 0.74374 0.79700 1.18495 1.18592 1.18335 1.19271 0.95928 0.88735 1.45803 0.87927 1.18509 0.81657 0.93648 0.94588 1.43616 1.07698 1.06370 1.64181 0.72443 1.19335 0.88650 0.80543 1.06829 1.40173 1.00180 1.09495 1.89041 1.69049 0.95997 1.32951 1.28068 1.19761 0.91123 0.90959 1.39967 1.16750 0.86004 0.72795 0.72677 1.93104 1.90924 1.95923 1.37826 1.93065 1.96134 1.46543 1.81400 1.93077 1.80612 1.61235 1.81269 0.88595 0.75826 0.75020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -38.30 10.78 21.83 0.24 -38.06 14 2 C 0.04 1.65 5.50 85.22 0.47 2.12 14 3 Si 1.00 35.32 29.56 68.60 2.03 37.35 14 4 H -0.26 -8.91 7.11 99.48 0.71 -8.20 14 5 H -0.26 -8.55 7.11 99.48 0.71 -7.85 14 6 H -0.26 -9.19 7.11 99.48 0.71 -8.48 14 7 C -0.46 -23.86 8.77 23.08 0.20 -23.66 14 8 H 0.10 5.22 6.17 -2.91 -0.02 5.20 14 9 C 0.23 12.55 6.72 38.77 0.26 12.81 14 10 N -0.59 -28.86 5.89 -188.59 -1.11 -29.97 14 11 H 0.43 19.67 6.45 -92.71 -0.60 19.07 14 12 C 0.40 18.49 9.36 260.44 2.44 20.92 14 13 N -0.83 -27.23 9.02 -58.45 -0.53 -27.76 14 14 N -0.53 -27.60 11.15 -183.24 -2.04 -29.64 14 15 C -0.30 -15.99 6.56 42.74 0.28 -15.71 14 16 C 0.57 28.36 3.49 71.24 0.25 28.61 14 17 F -0.20 -9.40 17.30 44.97 0.78 -8.63 14 18 F -0.19 -9.05 17.26 44.97 0.78 -8.27 14 19 F -0.18 -8.58 15.03 44.97 0.68 -7.91 14 20 H 0.30 12.10 8.30 -92.71 -0.77 11.33 14 21 H 0.41 10.83 8.95 -92.71 -0.83 10.00 14 22 H 0.42 11.93 8.95 -92.71 -0.83 11.10 14 Total: -1.00 -59.40 216.53 3.78 -55.61 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: -0.92 Total: 32.18 kcal Atomic # 6 Polarization: 21.19 SS G_CDS: 3.90 Total: 25.09 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -3.45 Total: -125.43 kcal Atomic # 9 Polarization: -27.03 SS G_CDS: 2.23 Total: -24.80 kcal Atomic # 14 Polarization: 35.32 SS G_CDS: 2.03 Total: 37.35 kcal Total: -59.40 3.78 -55.61 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254040.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.342 kcal (2) G-P(sol) polarization free energy of solvation -59.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds