Wall clock time and date at job start Mon Mar 30 2020 02:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30636 * 1 3 3 Si 1.86797 * 119.99929 * 2 1 4 4 H 1.48499 * 109.47378 * 272.71001 * 3 2 1 5 5 H 1.48499 * 109.47359 * 32.71267 * 3 2 1 6 6 H 1.48504 * 109.47369 * 152.71326 * 3 2 1 7 7 C 1.40377 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00391 * 189.75341 * 7 2 1 9 9 C 1.39453 * 119.99853 * 9.74817 * 7 2 1 10 10 C 1.39990 * 125.91521 * 16.49338 * 9 7 2 11 11 C 1.38980 * 107.75603 * 179.97438 * 10 9 7 12 12 O 1.35068 * 144.57934 * 180.43102 * 11 10 9 13 13 C 1.35038 * 109.53205 * 179.97438 * 12 11 10 14 14 C 1.46456 * 125.55869 * 179.82319 * 13 12 11 15 15 O 1.21641 * 119.99696 * 179.69741 * 14 13 12 16 16 O 1.34951 * 119.99845 * 359.69989 * 14 13 12 17 17 C 1.37932 * 108.88220 * 359.56526 * 13 12 11 18 18 C 1.39966 * 107.01145 * 0.25998 * 17 13 12 19 19 N 1.38037 * 145.14961 * 180.02562 * 18 17 13 20 20 H 0.96998 * 125.81123 * 359.95850 * 19 18 17 21 21 H 0.97006 * 119.99852 * 359.97438 * 1 2 3 22 22 H 1.08003 * 126.11813 * 359.97438 * 10 9 7 23 23 H 0.96697 * 113.99875 * 180.02562 * 16 14 13 24 24 H 1.07996 * 126.49766 * 180.28706 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4305 2.0796 -1.3985 5 1 1.4677 2.6354 0.7566 6 1 3.5655 1.4243 0.6419 7 6 2.0083 -1.2157 -0.0005 8 1 3.0765 -1.2226 0.1579 9 6 1.3261 -2.4146 -0.2056 10 6 0.0370 -2.5456 -0.7353 11 6 -0.2697 -3.9006 -0.7737 12 8 -1.2120 -4.8067 -1.1137 13 6 -0.7630 -6.0500 -0.8382 14 6 -1.5037 -7.2929 -1.0655 15 8 -0.9976 -8.3626 -0.7839 16 8 -2.7475 -7.2512 -1.5873 17 6 0.5093 -5.9591 -0.3132 18 6 0.8365 -4.5990 -0.2661 19 7 1.8060 -3.6784 0.0775 20 1 2.6758 -3.8840 0.4542 21 1 -0.4850 0.8401 0.0004 22 1 -0.6044 -1.7382 -1.0566 23 1 -3.1560 -8.1204 -1.7001 24 1 1.1347 -6.7814 0.0014 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261274794.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:13 Heat of formation + Delta-G solvation = -70.209456 kcal Electronic energy + Delta-G solvation = -14065.776938 eV Core-core repulsion = 11331.431467 eV Total energy + Delta-G solvation = -2734.345471 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.27964 -40.92363 -39.62992 -37.07717 -35.67394 -32.94159 -31.07993 -30.23685 -27.74433 -24.24615 -22.37807 -21.72599 -21.19664 -19.34134 -19.00657 -18.46082 -17.61043 -17.27742 -16.16120 -16.06773 -15.99576 -14.80938 -14.32998 -14.21815 -14.08673 -13.77961 -13.38091 -12.93357 -12.62422 -12.44779 -12.21596 -11.95109 -11.84772 -11.31235 -10.65752 -9.29391 -8.76566 -8.73090 -6.47156 -0.09977 1.28507 1.46132 1.62226 1.67608 1.74820 2.10260 2.13605 2.20516 2.26533 2.94552 3.18943 4.03836 4.35998 4.57320 4.65023 5.00396 5.02265 5.29239 5.45311 5.59171 5.80757 5.90354 5.97249 6.48674 6.61225 6.77273 6.99651 7.25113 8.19634 Molecular weight = 221.05amu Principal moments of inertia in cm(-1) A = 0.080108 B = 0.006383 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.445287 B = 4385.507991 C = 4701.136123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.036 3.964 3 Si 1.010 2.990 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.249 1.249 7 C -0.459 4.459 8 H 0.108 0.892 9 C 0.289 3.711 10 C -0.318 4.318 11 C 0.038 3.962 12 O -0.184 6.184 13 C -0.177 4.177 14 C 0.581 3.419 15 O -0.540 6.540 16 O -0.497 6.497 17 C -0.045 4.045 18 C -0.127 4.127 19 N -0.590 5.590 20 H 0.419 0.581 21 H 0.298 0.702 22 H 0.134 0.866 23 H 0.429 0.571 24 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.776 -1.928 -0.245 2.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.184 4.184 3 Si 0.828 3.172 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.172 1.172 7 C -0.491 4.491 8 H 0.126 0.874 9 C 0.178 3.822 10 C -0.341 4.341 11 C -0.016 4.016 12 O -0.085 6.085 13 C -0.224 4.224 14 C 0.430 3.570 15 O -0.435 6.435 16 O -0.310 6.310 17 C -0.067 4.067 18 C -0.229 4.229 19 N -0.203 5.203 20 H 0.258 0.742 21 H 0.109 0.891 22 H 0.152 0.848 23 H 0.290 0.710 24 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.601 -1.766 -0.221 2.394 hybrid contribution 0.116 -0.136 0.088 0.199 sum 1.717 -1.903 -0.133 2.566 Atomic orbital electron populations 1.69811 1.09583 1.31739 1.31055 1.27012 0.95631 1.05010 0.90767 0.84769 0.78828 0.73990 0.79585 1.18637 1.19292 1.17172 1.19167 0.96952 0.88776 1.44252 0.87402 1.18259 0.90258 0.83722 0.90006 1.20194 1.00635 0.88725 1.24556 1.20553 0.87333 0.93250 1.00486 1.83963 1.39758 1.14025 1.70772 1.20365 0.96884 0.82514 1.22685 1.18478 0.79665 0.85356 0.73485 1.90897 1.70270 1.29576 1.52752 1.85092 1.28630 1.41215 1.76060 1.20677 0.93926 0.93167 0.98927 1.18642 0.93633 0.91909 1.18765 1.41288 1.15876 1.03529 1.59622 0.74248 0.89097 0.84788 0.71004 0.81052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.89 10.74 21.90 0.24 -37.66 14 2 C 0.04 1.59 5.43 85.39 0.46 2.06 14 3 Si 1.01 32.29 29.57 68.60 2.03 34.31 14 4 H -0.26 -8.24 7.11 99.48 0.71 -7.53 14 5 H -0.27 -8.32 7.11 99.48 0.71 -7.61 14 6 H -0.25 -7.46 7.11 99.48 0.71 -6.75 14 7 C -0.46 -21.11 9.42 23.08 0.22 -20.89 14 8 H 0.11 4.39 7.87 -2.91 -0.02 4.37 14 9 C 0.29 14.40 6.75 38.87 0.26 14.66 14 10 C -0.32 -17.27 9.62 22.87 0.22 -17.05 14 11 C 0.04 2.02 8.15 22.96 0.19 2.21 14 12 O -0.18 -9.30 10.71 -17.06 -0.18 -9.48 14 13 C -0.18 -7.87 7.18 24.34 0.17 -7.70 14 14 C 0.58 21.82 8.27 69.96 0.58 22.40 14 15 O -0.54 -20.84 17.59 19.37 0.34 -20.50 14 16 O -0.50 -15.13 13.56 -57.08 -0.77 -15.91 14 17 C -0.04 -1.90 10.62 22.62 0.24 -1.66 14 18 C -0.13 -6.03 8.08 39.09 0.32 -5.72 14 19 N -0.59 -26.19 6.24 -179.90 -1.12 -27.31 14 20 H 0.42 15.14 8.96 -92.71 -0.83 14.31 14 21 H 0.30 12.58 8.29 -92.70 -0.77 11.81 14 22 H 0.13 7.56 6.31 -2.91 -0.02 7.54 14 23 H 0.43 7.49 8.98 -74.06 -0.67 6.82 14 24 H 0.17 6.09 8.06 -2.91 -0.02 6.06 14 Total: -1.00 -62.17 231.72 2.98 -59.20 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -0.21 Total: 29.02 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 2.66 Total: -11.68 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: -0.89 Total: -64.97 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -0.62 Total: -45.89 kcal Atomic # 14 Polarization: 32.29 SS G_CDS: 2.03 Total: 34.31 kcal Total: -62.17 2.98 -59.20 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261274794.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.014 kcal (2) G-P(sol) polarization free energy of solvation -62.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds