Wall clock time and date at job start Mon Mar 30 2020 02:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 C 1.32570 * 124.80397 * 119.72430 * 12 2 1 14 14 C 1.40132 * 115.59681 * 179.83256 * 13 12 2 15 15 N 1.39452 * 140.10576 * 180.12097 * 14 13 12 16 16 H 0.97001 * 125.62719 * 0.27347 * 15 14 13 17 17 C 1.36573 * 108.74219 * 180.31055 * 15 14 13 18 18 C 1.34334 * 109.10484 * 0.02562 * 17 15 14 19 19 C 1.37527 * 113.07000 * 0.44833 * 14 13 12 20 20 S 1.75612 * 124.80247 * 300.02573 * 12 2 1 21 21 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 22 22 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 23 23 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 25 25 H 1.07997 * 122.20181 * 359.97438 * 13 12 2 26 26 H 1.08005 * 125.44766 * 179.97438 * 17 15 14 27 27 H 1.08001 * 126.11716 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 6 2.0323 -0.7103 -1.2306 13 6 2.7934 -0.1583 -2.1652 14 6 3.1527 -0.9985 -3.2276 15 7 3.8880 -0.9707 -4.4121 16 1 4.3712 -0.2046 -4.7594 17 6 3.8149 -2.1998 -5.0030 18 6 3.0610 -3.0097 -4.2413 19 6 2.6327 -2.2664 -3.1116 20 16 1.6861 -2.3842 -1.6331 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 0.7006 1.1552 3.4844 25 1 3.1172 0.8705 -2.1102 26 1 4.2870 -2.4762 -5.9343 27 1 2.8236 -4.0421 -4.4513 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261279498.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:20 Heat of formation + Delta-G solvation = 41.345621 kcal Electronic energy + Delta-G solvation = -12353.003876 eV Core-core repulsion = 10202.081762 eV Total energy + Delta-G solvation = -2150.922114 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 221.057 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.86220 -37.54071 -35.14385 -32.49958 -31.53321 -28.01402 -27.21741 -24.12564 -22.65328 -21.45593 -20.15739 -19.21764 -18.08800 -16.66167 -16.18704 -15.43311 -15.36222 -15.16571 -14.54397 -14.09366 -13.53930 -13.32805 -13.03553 -12.85342 -12.70053 -12.35846 -12.22078 -11.95272 -11.67015 -11.48391 -10.99316 -10.48384 -10.34213 -8.72602 -8.42897 -8.10244 -6.25532 0.36706 0.85239 1.42158 1.43301 1.46658 1.54178 1.86931 2.01270 2.35215 2.45135 3.16706 4.12370 4.31285 4.35118 4.67145 4.77068 4.81078 5.02652 5.12088 5.14579 5.36415 5.42035 5.57756 5.77784 5.83302 6.00134 6.03844 6.29743 6.80771 6.82359 7.42351 8.93280 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.048902 B = 0.007763 C = 0.007506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.433554 B = 3605.848444 C = 3729.252537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.101 3.899 3 H 0.020 0.980 4 C -0.525 4.525 5 H 0.051 0.949 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.279 1.279 11 H -0.270 1.270 12 C -0.118 4.118 13 C -0.156 4.156 14 C 0.023 3.977 15 N -0.553 5.553 16 H 0.429 0.571 17 C 0.056 3.944 18 C -0.194 4.194 19 C -0.244 4.244 20 S 0.096 5.904 21 H 0.067 0.933 22 H 0.028 0.972 23 H 0.029 0.971 24 H 0.264 0.736 25 H 0.135 0.865 26 H 0.224 0.776 27 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.923 -4.477 -13.545 15.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.081 3.919 3 H 0.038 0.962 4 C -0.564 4.564 5 H 0.069 0.931 6 C -0.180 4.180 7 N -0.554 5.554 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.205 1.205 11 H -0.194 1.194 12 C -0.235 4.235 13 C -0.188 4.188 14 C -0.092 4.092 15 N -0.155 5.155 16 H 0.269 0.731 17 C -0.075 4.075 18 C -0.223 4.223 19 C -0.365 4.365 20 S 0.356 5.644 21 H 0.085 0.915 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.153 0.847 26 H 0.240 0.760 27 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.102 -5.352 -12.782 14.452 hybrid contribution 1.118 1.336 0.364 1.780 sum 5.221 -4.016 -12.418 14.057 Atomic orbital electron populations 1.21660 0.96905 0.99335 1.00203 1.17368 0.93220 0.93800 0.87511 0.96206 1.21346 1.31459 1.12563 0.90999 0.93064 1.25660 0.95060 0.95671 1.01619 1.69985 1.37207 1.23938 1.24224 0.85616 0.78193 0.79184 0.79105 1.20092 1.20484 1.19447 1.24511 1.02011 0.96855 1.00125 1.18887 1.04948 1.00760 0.94168 1.18262 1.03303 0.95185 0.92458 1.41947 1.42958 1.13555 1.17076 0.73098 1.22460 1.01866 0.82871 1.00346 1.20438 1.06560 1.01054 0.94285 1.23356 1.10448 0.99530 1.03153 1.83691 1.53793 1.11213 1.15750 0.91452 0.95339 0.95140 0.92698 0.84738 0.76002 0.82586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.16 8.88 71.98 0.64 -5.52 15 2 C 0.10 5.28 2.66 -12.29 -0.03 5.25 15 3 H 0.02 1.12 8.07 -2.38 -0.02 1.10 15 4 C -0.53 -29.50 8.45 25.60 0.22 -29.28 15 5 H 0.05 2.91 7.74 -2.91 -0.02 2.89 15 6 C 0.02 1.06 5.30 84.65 0.45 1.51 15 7 N -0.91 -52.45 11.31 21.45 0.24 -52.21 15 8 Si 0.95 44.02 29.54 68.60 2.03 46.04 15 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 15 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 15 12 C -0.12 -5.42 4.99 24.53 0.12 -5.29 15 13 C -0.16 -6.39 9.98 21.58 0.22 -6.18 15 14 C 0.02 0.84 7.71 38.22 0.29 1.13 15 15 N -0.55 -13.58 6.21 -188.03 -1.17 -14.75 15 16 H 0.43 7.34 8.96 -92.71 -0.83 6.51 15 17 C 0.06 1.16 11.87 83.06 0.99 2.15 15 18 C -0.19 -5.40 10.85 22.27 0.24 -5.15 15 19 C -0.24 -9.01 7.32 23.00 0.17 -8.84 15 20 S 0.10 4.01 22.91 -56.49 -1.29 2.72 15 21 H 0.07 3.65 6.06 -2.38 -0.01 3.64 15 22 H 0.03 1.27 8.14 -2.38 -0.02 1.25 15 23 H 0.03 1.47 7.97 -2.39 -0.02 1.45 15 24 H 0.26 14.33 8.31 -92.71 -0.77 13.56 15 25 H 0.13 5.11 8.06 -2.91 -0.02 5.09 15 26 H 0.22 2.04 8.06 -2.91 -0.02 2.02 15 27 H 0.16 3.57 8.06 -2.91 -0.02 3.55 15 Total: -1.00 -65.90 248.72 3.46 -62.44 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: 0.35 Total: 5.99 kcal Atomic # 6 Polarization: -53.53 SS G_CDS: 3.30 Total: -50.23 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: -0.92 Total: -66.96 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.29 Total: 2.72 kcal Total: -65.90 3.46 -62.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279498.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.786 kcal (2) G-P(sol) polarization free energy of solvation -65.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds