Wall clock time and date at job start Mon Mar 30 2020 02:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31017 * 1 3 3 Si 1.86802 * 119.99866 * 2 1 4 4 H 1.48504 * 109.47007 * 239.99794 * 3 2 1 5 5 H 1.48494 * 109.47218 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47260 * 120.00079 * 3 2 1 7 7 C 1.39679 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08011 * 120.00130 * 179.97438 * 7 2 1 9 9 C 1.41498 * 120.00326 * 0.02562 * 7 2 1 10 10 C 1.41602 * 126.50328 * 359.97438 * 9 7 2 11 11 C 1.37942 * 106.93282 * 180.02562 * 10 9 7 12 12 C 1.41445 * 131.74543 * 180.02562 * 11 10 9 13 13 C 1.35738 * 119.37305 * 180.02562 * 12 11 10 14 14 C 1.40923 * 119.74785 * 359.96847 * 13 12 11 15 15 Cl 1.73604 * 119.71810 * 179.97438 * 14 13 12 16 16 C 1.34634 * 120.56508 * 0.02562 * 14 13 12 17 17 N 1.37551 * 120.72723 * 0.02562 * 16 14 13 18 18 C 1.35155 * 131.11729 * 179.97438 * 17 16 14 19 19 H 0.97006 * 120.00097 * 0.02562 * 1 2 3 20 20 H 1.07996 * 126.52781 * 0.02562 * 10 9 7 21 21 H 1.07994 * 120.31375 * 0.02562 * 12 11 10 22 22 H 1.08004 * 120.12002 * 179.97438 * 13 12 11 23 23 H 1.07998 * 119.64073 * 179.97438 * 16 14 13 24 24 H 1.07999 * 125.73971 * 359.73930 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.0979 1.6964 -1.2125 5 1 1.2792 2.7464 -0.0006 6 1 3.0980 1.6965 1.2125 7 6 2.0086 -1.2097 0.0005 8 1 3.0887 -1.2097 0.0001 9 6 1.3012 -2.4351 0.0005 10 6 -0.1058 -2.5956 0.0005 11 6 -0.3554 -3.9522 0.0011 12 6 -1.5637 -4.6875 0.0009 13 6 -1.5176 -6.0440 0.0022 14 6 -0.2711 -6.7013 0.0030 15 17 -0.2130 -8.4364 0.0053 16 6 0.8752 -5.9952 0.0031 17 7 0.8535 -4.6199 0.0029 18 6 1.8575 -3.7151 0.0033 19 1 -0.4850 0.8401 -0.0004 20 1 -0.8428 -1.8062 0.0002 21 1 -2.5140 -4.1744 -0.0002 22 1 -2.4329 -6.6174 0.0025 23 1 1.8223 -6.5143 0.0041 24 1 2.9130 -3.9440 0.0080 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279775.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:25 Heat of formation + Delta-G solvation = 54.891697 kcal Electronic energy + Delta-G solvation = -12082.608368 eV Core-core repulsion = 9794.396855 eV Total energy + Delta-G solvation = -2288.211513 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.030 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.68882 -36.58531 -35.13874 -33.39712 -31.72610 -29.02968 -26.53394 -25.50997 -22.37355 -20.56794 -19.77774 -17.06382 -16.35388 -15.74293 -14.84031 -14.71221 -14.22846 -13.50063 -13.13859 -12.58624 -12.07192 -11.62099 -11.32680 -11.29352 -11.06564 -10.95513 -10.47186 -10.22865 -9.99530 -9.77898 -9.63660 -8.99980 -7.33432 -6.61777 -6.19012 -4.28556 1.67882 2.29380 2.51316 3.03342 3.08834 3.11645 3.95004 4.07229 4.10827 4.52887 5.26191 5.45746 5.52632 5.82177 6.03435 6.40545 6.62586 6.73077 6.89350 7.03732 7.21559 7.35848 7.76360 8.03754 8.08833 8.55442 8.66870 8.90494 8.96692 10.29310 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.083450 B = 0.006507 C = 0.006049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.448713 B = 4302.281788 C = 4627.888412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.068 3.932 3 Si 0.919 3.081 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.431 4.431 8 H 0.075 0.925 9 C 0.081 3.919 10 C -0.205 4.205 11 C 0.004 3.996 12 C -0.081 4.081 13 C -0.152 4.152 14 C -0.102 4.102 15 Cl -0.086 7.086 16 C 0.057 3.943 17 N -0.325 5.325 18 C -0.191 4.191 19 H 0.277 0.723 20 H 0.169 0.831 21 H 0.132 0.868 22 H 0.121 0.879 23 H 0.147 0.853 24 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.065 -6.393 0.006 6.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.147 4.147 3 Si 0.744 3.256 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.462 4.462 8 H 0.093 0.907 9 C 0.077 3.923 10 C -0.233 4.233 11 C -0.095 4.095 12 C -0.102 4.102 13 C -0.173 4.173 14 C -0.133 4.133 15 Cl -0.058 7.058 16 C -0.069 4.069 17 N 0.010 4.990 18 C -0.320 4.320 19 H 0.088 0.912 20 H 0.186 0.814 21 H 0.150 0.850 22 H 0.139 0.861 23 H 0.164 0.836 24 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.121 -6.502 0.007 6.598 hybrid contribution 0.494 0.409 0.000 0.641 sum -0.627 -6.093 0.008 6.125 Atomic orbital electron populations 1.69690 1.07331 1.28533 1.38041 1.25845 0.94901 1.01194 0.92766 0.86191 0.79705 0.79994 0.79689 1.19138 1.20390 1.19131 1.18926 0.94098 0.89086 1.44114 0.90714 1.17549 0.91999 0.90535 0.92253 1.22196 0.97613 0.91025 1.12419 1.19197 0.84372 0.93148 1.12772 1.20363 0.96310 0.92555 1.00950 1.20327 0.95357 0.94038 1.07580 1.19403 0.94155 0.83179 1.16570 1.98288 1.98841 1.10912 1.97762 1.20933 0.98251 0.82666 1.05059 1.40931 1.08330 1.02733 1.46981 1.21878 0.90965 0.87499 1.31625 0.91163 0.81387 0.85005 0.86090 0.83599 0.83759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.61 10.33 55.53 0.57 -20.04 14 2 C 0.07 1.69 5.49 -17.36 -0.10 1.60 14 3 Si 0.92 18.62 29.56 -169.99 -5.02 13.60 14 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 14 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 14 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 14 7 C -0.43 -11.34 9.39 -37.80 -0.36 -11.70 14 8 H 0.07 1.86 7.84 -52.48 -0.41 1.45 14 9 C 0.08 2.16 5.93 -106.88 -0.63 1.53 14 10 C -0.21 -5.34 9.82 -38.41 -0.38 -5.72 14 11 C 0.00 0.10 6.69 -83.93 -0.56 -0.46 14 12 C -0.08 -1.62 10.11 -39.26 -0.40 -2.01 14 13 C -0.15 -2.75 9.86 -39.46 -0.39 -3.14 14 14 C -0.10 -1.85 6.28 -39.84 -0.25 -2.10 14 15 Cl -0.09 -1.30 28.93 -51.86 -1.50 -2.80 14 16 C 0.06 1.12 10.63 -16.26 -0.17 0.95 14 17 N -0.33 -7.46 2.92 -59.90 -0.18 -7.63 14 18 C -0.19 -4.63 11.63 -15.59 -0.18 -4.81 14 19 H 0.28 6.46 8.30 -40.82 -0.34 6.12 14 20 H 0.17 4.48 5.81 -52.49 -0.30 4.18 14 21 H 0.13 2.28 8.06 -52.49 -0.42 1.86 14 22 H 0.12 1.85 8.06 -52.48 -0.42 1.43 14 23 H 0.15 2.44 8.06 -52.49 -0.42 2.02 14 24 H 0.14 3.12 8.06 -52.49 -0.42 2.70 14 LS Contribution 233.06 15.07 3.51 3.51 Total: -1.00 -26.91 233.06 -7.57 -34.48 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -1.54 Total: 4.76 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: -3.41 Total: -25.87 kcal Atomic # 7 Polarization: -28.07 SS G_CDS: 0.40 Total: -27.67 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.60 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.50 Total: -2.80 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -26.91 -7.57 -34.48 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279775.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.368 kcal (2) G-P(sol) polarization free energy of solvation -26.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds