Wall clock time and date at job start Mon Mar 30 2020 03:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34699 * 116.99678 * 2 1 4 4 O 1.21469 * 120.00139 * 359.97438 * 3 2 1 5 5 C 1.47758 * 119.99923 * 179.97438 * 3 2 1 6 6 C 1.39930 * 120.43971 * 354.17164 * 5 3 2 7 7 N 1.31849 * 121.11840 * 180.02562 * 6 5 3 8 8 C 1.31559 * 122.16509 * 359.97438 * 7 6 5 9 9 C 1.40775 * 120.73260 * 359.97438 * 8 7 6 10 10 C 1.41452 * 120.59521 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99640 * 207.45854 * 10 9 8 12 12 C 1.39944 * 120.00158 * 27.47308 * 10 9 8 13 13 N 1.30821 * 119.99612 * 12.28123 * 12 10 9 14 14 Si 1.86801 * 119.99732 * 192.28707 * 12 10 9 15 15 H 1.48492 * 109.47125 * 59.99556 * 14 12 10 16 16 H 1.48504 * 109.46656 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.46997 * 299.99347 * 14 12 10 18 18 C 1.39482 * 120.44348 * 174.19794 * 5 3 2 19 19 C 1.50700 * 120.97072 * 359.69948 * 18 5 3 20 20 H 1.09000 * 109.47018 * 60.00706 * 1 2 3 21 21 H 1.09009 * 109.46835 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47441 * 300.00295 * 1 2 3 23 23 H 1.08005 * 119.44367 * 0.02562 * 6 5 3 24 24 H 1.08004 * 119.63520 * 180.02562 * 8 7 6 25 25 H 0.97008 * 119.99470 * 180.02562 * 13 12 10 26 26 H 1.09004 * 109.46817 * 83.20070 * 19 18 5 27 27 H 1.09000 * 109.47487 * 203.20182 * 19 18 5 28 28 H 1.09000 * 109.47227 * 323.20687 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4019 2.2189 -0.0005 5 6 3.5391 1.2776 0.0006 6 6 4.3098 0.1162 0.1236 7 7 5.6272 0.1698 0.1262 8 6 6.2822 1.3052 0.0140 9 6 5.5910 2.5247 -0.1156 10 6 6.2981 3.7438 -0.2365 11 1 5.8467 4.6656 0.0995 12 6 7.5826 3.7555 -0.7919 13 7 8.0355 2.6980 -1.4148 14 14 8.6503 5.2811 -0.6436 15 1 8.8770 5.5891 0.7912 16 1 9.9553 5.0385 -1.3096 17 1 7.9677 6.4282 -1.2944 18 6 4.1822 2.5093 -0.1210 19 6 3.3933 3.7855 -0.2621 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 3.8173 -0.8403 0.2181 24 1 7.3622 1.3017 0.0206 25 1 8.9260 2.7060 -1.7994 26 1 3.0889 4.1354 0.7244 27 1 4.0119 4.5441 -0.7417 28 1 2.5083 3.6002 -0.8708 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261285696.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:56 Heat of formation + Delta-G solvation = -68.060813 kcal Electronic energy + Delta-G solvation = -14633.500083 eV Core-core repulsion = 12035.080879 eV Total energy + Delta-G solvation = -2598.419204 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.96862 -38.28528 -35.95876 -34.15829 -32.43764 -30.37943 -27.79984 -26.65892 -25.47025 -23.06439 -20.83129 -20.15517 -17.85321 -16.84819 -15.99559 -15.87960 -15.29864 -14.87769 -14.54150 -13.57090 -13.33315 -12.94951 -12.41884 -11.88822 -11.77674 -11.65900 -11.50550 -11.39272 -11.29043 -10.94299 -10.83635 -10.50820 -10.40006 -9.49127 -9.41737 -8.31322 -8.11282 -7.70912 -6.97070 -4.60387 1.75806 2.60029 2.98856 3.01115 3.07162 3.24484 3.45215 3.80200 4.51190 5.30781 5.36433 5.40644 5.44747 5.71291 5.92688 6.12380 6.23154 6.48480 6.61856 6.70823 6.82197 6.92614 6.98335 7.12862 7.44051 7.52649 7.87055 8.17325 8.34060 8.50950 8.59877 9.48684 9.99847 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.050176 B = 0.007928 C = 0.006992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.899416 B = 3531.084654 C = 4003.570112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.514 3.486 4 O -0.517 6.517 5 C -0.159 4.159 6 C 0.023 3.977 7 N -0.487 5.487 8 C 0.074 3.926 9 C 0.051 3.949 10 C -0.444 4.444 11 H 0.086 0.914 12 C 0.072 3.928 13 N -0.795 5.795 14 Si 0.918 3.082 15 H -0.262 1.262 16 H -0.276 1.276 17 H -0.264 1.264 18 C -0.094 4.094 19 C -0.095 4.095 20 H 0.058 0.942 21 H 0.095 0.905 22 H 0.058 0.942 23 H 0.135 0.865 24 H 0.159 0.841 25 H 0.287 0.713 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.630 -0.782 1.201 5.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.361 3.639 4 O -0.407 6.407 5 C -0.162 4.162 6 C -0.134 4.134 7 N -0.195 5.195 8 C -0.088 4.088 9 C 0.047 3.953 10 C -0.474 4.474 11 H 0.104 0.896 12 C -0.146 4.146 13 N -0.420 5.420 14 Si 0.742 3.258 15 H -0.186 1.186 16 H -0.201 1.201 17 H -0.188 1.188 18 C -0.102 4.102 19 C -0.151 4.151 20 H 0.077 0.923 21 H 0.114 0.886 22 H 0.076 0.924 23 H 0.152 0.848 24 H 0.176 0.824 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.206 -1.358 1.138 5.499 hybrid contribution -0.202 1.407 -0.160 1.430 sum -5.408 0.048 0.978 5.496 Atomic orbital electron populations 1.23138 0.77516 1.02956 1.02080 1.86604 1.22346 1.33728 1.84844 1.21660 0.89638 0.80637 0.71925 1.90720 1.67259 1.35644 1.47084 1.19577 0.87637 0.96448 1.12566 1.22148 0.89707 0.95722 1.05819 1.67265 1.08933 1.30795 1.12492 1.23339 1.00322 0.86855 0.98283 1.18392 0.89999 0.95405 0.91542 1.19499 0.98704 0.94394 1.34792 0.89581 1.25980 0.98010 0.98160 0.92481 1.69700 1.18201 1.29634 1.24445 0.86182 0.78656 0.81111 0.79814 1.18624 1.20114 1.18828 1.20353 0.93929 0.92884 1.02988 1.20670 0.98754 0.94616 1.01062 0.92341 0.88633 0.92352 0.84774 0.82438 0.90162 0.92857 0.91942 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.56 101.05 1.07 1.55 15 2 O -0.36 -6.37 9.85 -40.49 -0.40 -6.77 15 3 C 0.51 10.74 7.85 34.62 0.27 11.01 15 4 O -0.52 -11.19 13.29 -19.24 -0.26 -11.44 15 5 C -0.16 -3.69 5.88 -104.91 -0.62 -4.30 15 6 C 0.02 0.53 10.78 -16.91 -0.18 0.34 15 7 N -0.49 -12.19 10.32 -12.23 -0.13 -12.32 15 8 C 0.07 1.91 9.86 -16.71 -0.16 1.74 15 9 C 0.05 1.32 5.57 -106.71 -0.59 0.72 15 10 C -0.44 -11.03 8.17 -37.72 -0.31 -11.34 15 11 H 0.09 2.04 6.89 -52.49 -0.36 1.67 15 12 C 0.07 1.69 5.24 -17.34 -0.09 1.60 15 13 N -0.79 -19.39 10.86 55.55 0.60 -18.78 15 14 Si 0.92 17.61 29.58 -169.99 -5.03 12.58 15 15 H -0.26 -4.98 7.11 56.52 0.40 -4.58 15 16 H -0.28 -5.18 7.11 56.52 0.40 -4.77 15 17 H -0.26 -5.02 7.11 56.52 0.40 -4.62 15 18 C -0.09 -2.30 6.01 -103.16 -0.62 -2.92 15 19 C -0.09 -2.07 8.40 36.01 0.30 -1.77 15 20 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 21 H 0.10 0.90 8.14 -51.92 -0.42 0.48 15 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 23 H 0.13 2.75 7.62 -52.48 -0.40 2.35 15 24 H 0.16 4.11 6.18 -52.48 -0.32 3.79 15 25 H 0.29 6.37 8.30 -40.82 -0.34 6.03 15 26 H 0.05 1.11 8.14 -51.93 -0.42 0.69 15 27 H 0.06 1.33 6.58 -51.93 -0.34 0.99 15 28 H 0.07 1.49 6.00 -51.93 -0.31 1.18 15 LS Contribution 247.63 15.07 3.73 3.73 Total: -1.00 -27.55 247.63 -4.97 -32.53 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -2.56 Total: 3.83 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -0.94 Total: -3.36 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: 0.48 Total: -31.10 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.65 Total: -18.21 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -27.55 -4.97 -32.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261285696.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.535 kcal (2) G-P(sol) polarization free energy of solvation -27.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds