Wall clock time and date at job start Mon Mar 30 2020 03:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00135 * 2 1 4 4 H 1.48497 * 109.47367 * 270.00073 * 3 2 1 5 5 H 1.48504 * 109.46803 * 29.99997 * 3 2 1 6 6 H 1.48499 * 109.47214 * 149.99684 * 3 2 1 7 7 C 1.37878 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00019 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00093 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.27945 * 3.13600 * 9 7 2 11 11 N 1.46762 * 110.24760 * 125.11472 * 9 7 2 12 12 C 1.34422 * 111.29833 * 101.72077 * 11 9 7 13 13 O 1.21278 * 124.93906 * 180.65207 * 12 11 9 14 14 C 1.51274 * 110.11699 * 0.66939 * 12 11 9 15 15 C 1.54623 * 104.19787 * 16.25526 * 14 12 11 16 16 H 1.09002 * 110.97192 * 93.32161 * 15 14 12 17 17 C 1.50709 * 110.97218 * 217.04754 * 15 14 12 18 18 C 1.34512 * 125.78841 * 231.81391 * 17 15 14 19 19 C 1.41386 * 106.83919 * 179.97438 * 18 17 15 20 20 C 1.34508 * 106.84053 * 0.02562 * 19 18 17 21 21 O 1.34297 * 125.79031 * 51.50364 * 17 15 14 22 22 H 0.96996 * 120.00274 * 0.02562 * 1 2 3 23 23 H 0.96995 * 124.34906 * 281.98003 * 11 9 7 24 24 H 1.09001 * 110.48892 * 134.94014 * 14 12 11 25 25 H 1.09010 * 110.48602 * 257.44403 * 14 12 11 26 26 H 1.08001 * 126.57868 * 359.96691 * 18 17 15 27 27 H 1.07995 * 126.57677 * 180.02562 * 19 18 17 28 28 H 1.07999 * 125.79179 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.1781 -2.3160 -0.0559 11 7 1.6835 -3.3353 -1.1254 12 6 2.5326 -4.2962 -0.7222 13 8 3.0497 -5.1166 -1.4505 14 6 2.7490 -4.2057 0.7722 15 6 1.5870 -3.3155 1.2705 16 1 0.7379 -3.9224 1.5849 17 6 2.0415 -2.4097 2.3859 18 6 1.4443 -2.2765 3.5838 19 6 2.1990 -1.3302 4.3147 20 6 3.2117 -0.9414 3.5194 21 8 3.1146 -1.6028 2.3546 22 1 -0.4850 0.8400 -0.0004 23 1 1.3966 -3.2083 -2.0433 24 1 2.6936 -5.1950 1.2264 25 1 3.7100 -3.7398 0.9910 26 1 0.5584 -2.7932 3.9224 27 1 2.0003 -0.9858 5.3188 28 1 3.9759 -0.2226 3.7758 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261286933.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:03 Heat of formation + Delta-G solvation = -43.274322 kcal Electronic energy + Delta-G solvation = -15255.853195 eV Core-core repulsion = 12658.508814 eV Total energy + Delta-G solvation = -2597.344381 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.17101 -40.89793 -37.54744 -34.50846 -33.65334 -32.85145 -29.69827 -28.77835 -25.93440 -23.05560 -22.31846 -21.26861 -20.74970 -18.98465 -18.19998 -17.52258 -16.79379 -16.42916 -16.25572 -15.64173 -14.87055 -14.58282 -14.43532 -14.25823 -13.41207 -13.31550 -13.22372 -12.87481 -12.68779 -12.53959 -12.32489 -11.70943 -11.60924 -10.83383 -10.69934 -10.46353 -9.77839 -8.98930 -8.19810 -6.31337 1.17729 1.36292 1.40832 1.49197 1.75198 1.99131 2.37854 2.51529 2.74907 3.17659 3.74564 3.85861 4.11481 4.33557 4.39010 4.51509 4.61655 4.88985 4.95273 5.18940 5.25117 5.32823 5.51953 5.70207 5.92097 6.07853 6.12434 6.40499 6.64322 6.81340 7.35282 7.52129 8.83522 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.015394 C = 0.010631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.014932 B = 1818.501476 C = 2633.100142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.040 3.960 3 Si 0.937 3.063 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.512 4.512 8 H 0.050 0.950 9 C 0.238 3.762 10 H 0.070 0.930 11 N -0.708 5.708 12 C 0.509 3.491 13 O -0.606 6.606 14 C -0.132 4.132 15 C -0.022 4.022 16 H 0.119 0.881 17 C 0.046 3.954 18 C -0.243 4.243 19 C -0.221 4.221 20 C -0.074 4.074 21 O -0.169 6.169 22 H 0.266 0.734 23 H 0.400 0.600 24 H 0.120 0.880 25 H 0.097 0.903 26 H 0.154 0.846 27 H 0.164 0.836 28 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.052 -1.699 7.690 8.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.162 4.162 3 Si 0.763 3.237 4 H -0.206 1.206 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.551 4.551 8 H 0.069 0.931 9 C 0.136 3.864 10 H 0.088 0.912 11 N -0.358 5.358 12 C 0.296 3.704 13 O -0.490 6.490 14 C -0.172 4.172 15 C -0.041 4.041 16 H 0.137 0.863 17 C -0.005 4.005 18 C -0.263 4.263 19 C -0.240 4.240 20 C -0.142 4.142 21 O -0.064 6.064 22 H 0.075 0.925 23 H 0.238 0.762 24 H 0.138 0.862 25 H 0.115 0.885 26 H 0.172 0.828 27 H 0.181 0.819 28 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.357 -1.955 7.212 7.835 hybrid contribution 0.007 1.343 -0.443 1.415 sum 2.364 -0.612 6.769 7.196 Atomic orbital electron populations 1.69909 1.06906 1.27837 1.50277 1.25471 0.95340 1.01808 0.93558 0.85865 0.79469 0.80256 0.78117 1.20642 1.20887 1.18897 1.21252 0.92846 0.90618 1.50369 0.93147 1.19661 0.97675 0.87859 0.81215 0.91224 1.47061 1.45749 1.30793 1.12221 1.21188 0.77748 0.79706 0.91760 1.90618 1.54394 1.41594 1.62396 1.22263 1.00350 1.02588 0.92013 1.21017 0.97397 0.93656 0.92042 0.86306 1.21670 0.88686 0.94726 0.95413 1.21702 1.04127 1.05529 0.94897 1.21948 0.97662 1.02045 1.02326 1.24517 1.03722 1.01528 0.84387 1.84166 1.41844 1.44745 1.35665 0.92479 0.76242 0.86213 0.88498 0.82817 0.81887 0.76595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.28 12.63 21.45 0.27 -48.01 15 2 C 0.04 2.05 5.46 84.66 0.46 2.51 15 3 Si 0.94 41.39 29.54 68.60 2.03 43.42 15 4 H -0.28 -12.35 7.11 99.48 0.71 -11.64 15 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 6 H -0.26 -11.42 7.11 99.48 0.71 -10.71 15 7 C -0.51 -25.31 6.16 25.60 0.16 -25.16 15 8 H 0.05 2.62 7.27 -2.91 -0.02 2.59 15 9 C 0.24 10.52 3.72 44.76 0.17 10.69 15 10 H 0.07 3.39 6.98 -2.39 -0.02 3.37 15 11 N -0.71 -29.56 5.86 -442.68 -2.60 -32.16 15 12 C 0.51 21.15 8.43 87.89 0.74 21.89 15 13 O -0.61 -28.50 18.03 -3.02 -0.05 -28.55 15 14 C -0.13 -4.65 6.39 30.58 0.20 -4.46 15 15 C -0.02 -0.81 3.52 -10.42 -0.04 -0.84 15 16 H 0.12 3.78 8.13 -2.39 -0.02 3.76 15 17 C 0.05 1.78 5.18 24.84 0.13 1.91 15 18 C -0.24 -8.41 10.80 22.19 0.24 -8.17 15 19 C -0.22 -6.95 10.91 22.19 0.24 -6.71 15 20 C -0.07 -2.45 12.09 66.97 0.81 -1.64 15 21 O -0.17 -6.79 8.30 -2.43 -0.02 -6.81 15 22 H 0.27 13.59 8.31 -92.71 -0.77 12.82 15 23 H 0.40 16.00 8.96 -92.71 -0.83 15.16 15 24 H 0.12 3.45 8.14 -2.39 -0.02 3.43 15 25 H 0.10 3.51 7.69 -2.38 -0.02 3.49 15 26 H 0.15 4.59 8.06 -2.91 -0.02 4.57 15 27 H 0.16 4.04 8.06 -2.91 -0.02 4.01 15 28 H 0.22 5.41 8.06 -2.91 -0.02 5.39 15 Total: -1.00 -60.58 248.01 3.09 -57.49 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.35 Total: 24.59 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 3.11 Total: -9.98 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -2.32 Total: -80.17 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.07 Total: -35.36 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -60.58 3.09 -57.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286933.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.221 kcal (2) G-P(sol) polarization free energy of solvation -60.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds