Wall clock time and date at job start Mon Mar 30 2020 02:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31087 * 1 3 3 Si 1.86796 * 120.00292 * 2 1 4 4 H 1.48491 * 109.47329 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46821 * 299.99798 * 3 2 1 6 6 H 1.48499 * 109.47297 * 59.99151 * 3 2 1 7 7 C 1.39650 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00211 * 180.02562 * 7 2 1 9 9 C 1.41264 * 119.99893 * 0.02562 * 7 2 1 10 10 C 1.39366 * 126.86744 * 359.97438 * 9 7 2 11 11 N 1.34716 * 108.93444 * 179.97438 * 10 9 7 12 12 H 0.96993 * 124.79881 * 179.97438 * 11 10 9 13 13 C 1.38403 * 110.40862 * 359.97438 * 11 10 9 14 14 C 1.40483 * 145.16230 * 180.02562 * 13 11 10 15 15 C 1.36630 * 107.03666 * 179.97438 * 14 13 11 16 16 C 1.46346 * 125.62306 * 179.97438 * 15 14 13 17 17 O 1.21653 * 119.99876 * 0.02562 * 16 15 14 18 18 O 1.34929 * 119.99983 * 179.72765 * 16 15 14 19 19 O 1.35078 * 108.75679 * 0.26770 * 15 14 13 20 20 C 1.34465 * 109.45056 * 359.55792 * 19 15 14 21 21 H 0.97006 * 119.99684 * 0.02562 * 1 2 3 22 22 H 1.07999 * 125.53039 * 359.95414 * 10 9 7 23 23 H 1.07994 * 126.48134 * 359.97438 * 14 13 11 24 24 H 0.96700 * 113.99731 * 180.27499 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2449 1.6177 0.0000 4 1 3.7048 1.3463 0.0006 5 1 1.8862 2.3963 -1.2126 6 1 1.8861 2.3965 1.2124 7 6 2.0091 -1.2094 0.0005 8 1 3.0890 -1.2095 0.0010 9 6 1.3027 -2.4328 0.0005 10 6 -0.0810 -2.5993 0.0005 11 7 -0.3627 -3.9167 0.0000 12 1 -1.2574 -4.2914 0.0002 13 6 0.8048 -4.6599 -0.0010 14 6 1.3465 -5.9561 -0.0023 15 6 2.7062 -5.8217 -0.0031 16 6 3.6715 -6.9216 -0.0040 17 8 3.2808 -8.0737 -0.0046 18 8 4.9948 -6.6580 -0.0103 19 8 3.0126 -4.5061 0.0036 20 6 1.8794 -3.7824 -0.0010 21 1 -0.4850 0.8401 -0.0004 22 1 -0.8092 -1.8017 0.0012 23 1 0.7930 -6.8834 -0.0026 24 1 5.5531 -7.4475 -0.0147 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261287607.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:53 Heat of formation + Delta-G solvation = -36.273460 kcal Electronic energy + Delta-G solvation = -14142.498000 eV Core-core repulsion = 11409.624104 eV Total energy + Delta-G solvation = -2732.873895 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.79394 -39.67893 -37.88947 -35.91076 -33.60239 -31.39285 -29.52112 -27.91574 -25.09407 -23.39505 -20.77167 -19.84734 -19.65559 -18.06646 -17.37098 -16.13874 -15.89785 -15.86747 -14.84184 -14.65377 -14.11296 -13.48740 -12.71724 -12.44803 -12.26573 -12.08010 -11.43284 -11.41086 -11.22956 -10.78951 -10.68201 -10.06898 -9.88487 -9.60459 -8.90762 -7.43634 -6.85377 -6.57367 -4.13123 1.34981 3.03758 3.04158 3.10583 3.17296 3.24117 3.61605 3.62876 4.04317 4.06688 4.47153 5.37372 5.51241 5.67927 5.99453 6.05882 6.46831 6.70539 6.91451 7.08600 7.21711 7.60924 7.87960 8.09312 8.13558 8.50392 8.82198 8.96684 9.03614 10.43321 Molecular weight = 221.05amu Principal moments of inertia in cm(-1) A = 0.044058 B = 0.007663 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.372260 B = 3653.036680 C = 4278.563910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.056 3.944 3 Si 0.921 3.079 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.426 4.426 8 H 0.075 0.925 9 C 0.038 3.962 10 C -0.034 4.034 11 N -0.564 5.564 12 H 0.399 0.601 13 C -0.065 4.065 14 C -0.075 4.075 15 C -0.097 4.097 16 C 0.572 3.428 17 O -0.518 6.518 18 O -0.496 6.496 19 O -0.148 6.148 20 C -0.015 4.015 21 H 0.275 0.725 22 H 0.208 0.792 23 H 0.149 0.851 24 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.497 -5.931 -0.013 6.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.153 4.153 3 Si 0.748 3.252 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.459 4.459 8 H 0.094 0.906 9 C 0.032 3.968 10 C -0.162 4.162 11 N -0.169 5.169 12 H 0.233 0.767 13 C -0.172 4.172 14 C -0.098 4.098 15 C -0.146 4.146 16 C 0.420 3.580 17 O -0.410 6.410 18 O -0.305 6.305 19 O -0.046 6.046 20 C -0.073 4.073 21 H 0.086 0.914 22 H 0.224 0.776 23 H 0.167 0.833 24 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 1.228 -5.582 -0.008 5.715 hybrid contribution 0.214 -0.072 0.000 0.226 sum 1.442 -5.654 -0.008 5.835 Atomic orbital electron populations 1.69362 1.07109 1.28062 1.43111 1.25545 0.94898 1.00640 0.94175 0.86018 0.80344 0.80789 0.78096 1.18869 1.20300 1.20305 1.18831 0.94244 0.88740 1.44111 0.90632 1.17511 0.88874 0.85262 1.05177 1.23523 0.96772 0.82134 1.13738 1.40597 1.04473 1.05655 1.66220 0.76684 1.18537 0.88796 0.92425 1.17459 1.20335 0.91449 0.95471 1.02521 1.19886 0.91245 0.82124 1.21337 1.18916 0.80867 0.86127 0.72129 1.90942 1.80419 1.20690 1.48954 1.85164 1.17868 1.41541 1.85973 1.83916 1.31473 1.14313 1.74883 1.22010 0.80899 0.95501 1.08884 0.91441 0.77631 0.83344 0.73729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.09 10.34 55.53 0.57 -20.52 14 2 C 0.06 1.41 5.49 -17.34 -0.10 1.32 14 3 Si 0.92 19.30 29.56 -169.99 -5.02 14.28 14 4 H -0.26 -5.56 7.11 56.52 0.40 -5.16 14 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 14 6 H -0.28 -5.71 7.11 56.52 0.40 -5.31 14 7 C -0.43 -11.51 9.43 -37.91 -0.36 -11.87 14 8 H 0.08 2.03 7.84 -52.49 -0.41 1.62 14 9 C 0.04 1.01 6.10 -104.88 -0.64 0.37 14 10 C -0.03 -0.81 10.89 -15.87 -0.17 -0.98 14 11 N -0.56 -11.72 5.98 -9.90 -0.06 -11.78 14 12 H 0.40 6.56 8.96 -40.82 -0.37 6.19 14 13 C -0.06 -1.44 8.08 -83.87 -0.68 -2.12 14 14 C -0.08 -1.49 10.58 -39.32 -0.42 -1.91 14 15 C -0.10 -2.00 7.14 -36.90 -0.26 -2.26 14 16 C 0.57 10.12 8.27 33.99 0.28 10.40 14 17 O -0.52 -9.49 17.58 -19.38 -0.34 -9.83 14 18 O -0.50 -7.25 13.56 -42.79 -0.58 -7.83 14 19 O -0.15 -3.55 10.69 2.59 0.03 -3.53 14 20 C -0.01 -0.38 8.42 -35.95 -0.30 -0.68 14 21 H 0.27 6.30 8.30 -40.82 -0.34 5.96 14 22 H 0.21 4.95 5.70 -52.49 -0.30 4.65 14 23 H 0.15 2.48 8.06 -52.49 -0.42 2.06 14 24 H 0.41 3.44 8.98 45.56 0.41 3.85 14 LS Contribution 231.26 15.07 3.49 3.49 Total: -1.00 -30.11 231.26 -4.79 -34.90 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -0.22 Total: 8.56 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -2.64 Total: -7.75 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.51 Total: -32.29 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.89 Total: -21.18 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -30.11 -4.79 -34.90 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287607.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.377 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds