Wall clock time and date at job start Mon Mar 30 2020 02:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31087 * 1 3 3 Si 1.86796 * 120.00292 * 2 1 4 4 H 1.48491 * 109.47329 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46821 * 299.99798 * 3 2 1 6 6 H 1.48499 * 109.47297 * 59.99151 * 3 2 1 7 7 C 1.39650 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00211 * 180.02562 * 7 2 1 9 9 C 1.41264 * 119.99893 * 0.02562 * 7 2 1 10 10 C 1.39366 * 126.86744 * 359.97438 * 9 7 2 11 11 N 1.34716 * 108.93444 * 179.97438 * 10 9 7 12 12 H 0.96993 * 124.79881 * 179.97438 * 11 10 9 13 13 C 1.38403 * 110.40862 * 359.97438 * 11 10 9 14 14 C 1.40483 * 145.16230 * 180.02562 * 13 11 10 15 15 C 1.36630 * 107.03666 * 179.97438 * 14 13 11 16 16 C 1.46346 * 125.62306 * 179.97438 * 15 14 13 17 17 O 1.21653 * 119.99876 * 0.02562 * 16 15 14 18 18 O 1.34929 * 119.99983 * 179.72765 * 16 15 14 19 19 O 1.35078 * 108.75679 * 0.26770 * 15 14 13 20 20 C 1.34465 * 109.45056 * 359.55792 * 19 15 14 21 21 H 0.97006 * 119.99684 * 0.02562 * 1 2 3 22 22 H 1.07999 * 125.53039 * 359.95414 * 10 9 7 23 23 H 1.07994 * 126.48134 * 359.97438 * 14 13 11 24 24 H 0.96700 * 113.99731 * 180.27499 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2449 1.6177 0.0000 4 1 3.7048 1.3463 0.0006 5 1 1.8862 2.3963 -1.2126 6 1 1.8861 2.3965 1.2124 7 6 2.0091 -1.2094 0.0005 8 1 3.0890 -1.2095 0.0010 9 6 1.3027 -2.4328 0.0005 10 6 -0.0810 -2.5993 0.0005 11 7 -0.3627 -3.9167 0.0000 12 1 -1.2574 -4.2914 0.0002 13 6 0.8048 -4.6599 -0.0010 14 6 1.3465 -5.9561 -0.0023 15 6 2.7062 -5.8217 -0.0031 16 6 3.6715 -6.9216 -0.0040 17 8 3.2808 -8.0737 -0.0046 18 8 4.9948 -6.6580 -0.0103 19 8 3.0126 -4.5061 0.0036 20 6 1.8794 -3.7824 -0.0010 21 1 -0.4850 0.8401 -0.0004 22 1 -0.8092 -1.8017 0.0012 23 1 0.7930 -6.8834 -0.0026 24 1 5.5531 -7.4475 -0.0147 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261287607.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:52 Heat of formation + Delta-G solvation = -57.427563 kcal Electronic energy + Delta-G solvation = -14143.415310 eV Core-core repulsion = 11409.624104 eV Total energy + Delta-G solvation = -2733.791206 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.50907 -41.07409 -39.64906 -37.22360 -35.48644 -33.07523 -31.36004 -29.61279 -26.97180 -24.98206 -22.47399 -21.62642 -21.28244 -19.66500 -18.81422 -17.86154 -17.72836 -17.45051 -16.54651 -16.18626 -15.83828 -14.86841 -14.48349 -14.09331 -14.02357 -13.81012 -13.27718 -12.90653 -12.71506 -12.50114 -12.16099 -11.92365 -11.69031 -11.39744 -10.62739 -9.25544 -8.67075 -8.44799 -6.08356 -0.20974 1.37079 1.45869 1.48809 1.53084 1.60372 1.96953 2.03018 2.19310 2.33022 2.89308 3.40328 3.97073 4.15305 4.41459 4.45716 4.97002 5.17330 5.22480 5.33157 5.45146 5.73095 6.15223 6.23090 6.60247 6.84930 6.97438 7.09398 7.21856 8.57046 Molecular weight = 221.05amu Principal moments of inertia in cm(-1) A = 0.044058 B = 0.007663 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.372260 B = 3653.036680 C = 4278.563910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.020 3.980 3 Si 0.988 3.012 4 H -0.271 1.271 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.468 4.468 8 H 0.058 0.942 9 C -0.004 4.004 10 C -0.032 4.032 11 N -0.544 5.544 12 H 0.422 0.578 13 C -0.059 4.059 14 C -0.066 4.066 15 C -0.100 4.100 16 C 0.586 3.414 17 O -0.519 6.519 18 O -0.492 6.492 19 O -0.170 6.170 20 C -0.069 4.069 21 H 0.284 0.716 22 H 0.207 0.793 23 H 0.187 0.813 24 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.411 -6.785 -0.016 6.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.187 4.187 3 Si 0.811 3.189 4 H -0.195 1.195 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.501 4.501 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.161 4.161 11 N -0.151 5.151 12 H 0.260 0.740 13 C -0.168 4.168 14 C -0.088 4.088 15 C -0.149 4.149 16 C 0.432 3.568 17 O -0.412 6.412 18 O -0.305 6.305 19 O -0.069 6.069 20 C -0.126 4.126 21 H 0.095 0.905 22 H 0.223 0.777 23 H 0.204 0.796 24 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 1.120 -6.486 -0.012 6.582 hybrid contribution 0.303 0.034 0.001 0.305 sum 1.424 -6.452 -0.011 6.607 Atomic orbital electron populations 1.69374 1.07851 1.29387 1.42558 1.26310 0.95884 1.03259 0.93212 0.85026 0.78539 0.76619 0.78705 1.19520 1.19136 1.19146 1.18970 0.93760 0.90393 1.47024 0.92331 1.17912 0.90411 0.86143 1.06541 1.23380 0.95924 0.83347 1.13477 1.40472 1.05403 1.04614 1.64591 0.74020 1.18815 0.88320 0.93046 1.16640 1.20707 0.91191 0.95655 1.01248 1.20664 0.92839 0.81652 1.19716 1.18466 0.81520 0.84943 0.71898 1.90952 1.80814 1.20385 1.49030 1.85112 1.16735 1.43528 1.85077 1.83866 1.31652 1.15698 1.75713 1.22114 0.82375 0.95985 1.12171 0.90488 0.77729 0.79625 0.70391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.22 10.34 21.79 0.23 -42.99 14 2 C 0.02 1.04 5.49 85.15 0.47 1.51 14 3 Si 0.99 39.86 29.56 68.60 2.03 41.89 14 4 H -0.27 -11.06 7.11 99.48 0.71 -10.36 14 5 H -0.27 -10.21 7.11 99.48 0.71 -9.50 14 6 H -0.27 -10.22 7.11 99.48 0.71 -9.51 14 7 C -0.47 -26.40 9.43 23.36 0.22 -26.18 14 8 H 0.06 3.34 7.84 -2.91 -0.02 3.32 14 9 C 0.00 -0.22 6.10 -20.03 -0.12 -0.35 14 10 C -0.03 -1.56 10.89 84.52 0.92 -0.64 14 11 N -0.54 -22.20 5.98 -185.23 -1.11 -23.30 14 12 H 0.42 13.10 8.96 -92.71 -0.83 12.27 14 13 C -0.06 -2.61 8.08 38.77 0.31 -2.30 14 14 C -0.07 -2.49 10.58 22.44 0.24 -2.25 14 15 C -0.10 -4.00 7.14 24.00 0.17 -3.83 14 16 C 0.59 19.26 8.27 69.93 0.58 19.84 14 17 O -0.52 -17.38 17.58 19.33 0.34 -17.04 14 18 O -0.49 -13.10 13.56 -56.85 -0.77 -13.87 14 19 O -0.17 -8.30 10.69 -11.38 -0.12 -8.42 14 20 C -0.07 -3.60 8.42 24.62 0.21 -3.39 14 21 H 0.28 12.92 8.30 -92.70 -0.77 12.15 14 22 H 0.21 9.98 5.70 -2.91 -0.02 9.97 14 23 H 0.19 5.49 8.06 -2.91 -0.02 5.47 14 24 H 0.43 5.90 8.98 -74.06 -0.67 5.23 14 Total: -1.00 -65.68 231.26 3.38 -62.30 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -0.21 Total: 19.03 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 2.99 Total: -17.58 kcal Atomic # 7 Polarization: -65.42 SS G_CDS: -0.88 Total: -66.30 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -0.55 Total: -39.33 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -65.68 3.38 -62.30 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287607.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.870 kcal (2) G-P(sol) polarization free energy of solvation -65.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds