Wall clock time and date at job start Mon Mar 30 2020 02:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31464 * 1 3 3 Si 1.86802 * 120.00027 * 2 1 4 4 H 1.48496 * 109.47096 * 270.00039 * 3 2 1 5 5 H 1.48506 * 109.46950 * 29.99840 * 3 2 1 6 6 H 1.48499 * 109.47106 * 149.99597 * 3 2 1 7 7 C 1.38827 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00175 * 154.74716 * 7 2 1 9 9 N 1.37491 * 120.00076 * 334.75259 * 7 2 1 10 10 C 1.34851 * 125.15983 * 327.73325 * 9 7 2 11 11 O 1.21397 * 125.89318 * 0.02562 * 10 9 7 12 12 C 1.47216 * 108.21274 * 179.87146 * 10 9 7 13 13 C 1.34659 * 106.94813 * 0.42253 * 12 10 9 14 14 C 1.50576 * 124.36247 * 179.62829 * 13 12 10 15 15 C 1.53431 * 108.31691 * 343.53907 * 14 13 12 16 16 C 1.53117 * 109.54858 * 49.63412 * 15 14 13 17 17 C 1.50574 * 128.69050 * 180.21798 * 12 10 9 18 18 C 1.34852 * 125.16117 * 148.04302 * 9 7 2 19 19 O 1.21388 * 125.89717 * 359.97438 * 18 9 7 20 20 H 0.97001 * 119.99694 * 174.34977 * 1 2 3 21 21 H 1.09004 * 109.69024 * 103.24634 * 14 13 12 22 22 H 1.08996 * 109.69492 * 223.82972 * 14 13 12 23 23 H 1.08998 * 109.45800 * 289.60748 * 15 14 13 24 24 H 1.09004 * 109.45792 * 169.66187 * 15 14 13 25 25 H 1.08997 * 109.45687 * 170.17112 * 16 15 14 26 26 H 1.08996 * 109.44435 * 50.20912 * 16 15 14 27 27 H 1.08998 * 109.69414 * 283.47688 * 17 12 10 28 28 H 1.08997 * 109.69500 * 44.01883 * 17 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 2.4961 2.0464 -1.4000 5 1 1.4460 2.6527 0.7000 6 1 3.5462 1.4402 0.7001 7 6 2.0088 -1.2023 0.0005 8 1 3.0114 -1.2472 -0.3985 9 7 1.4199 -2.3359 0.5089 10 6 0.5359 -2.3620 1.5269 11 8 0.1301 -1.3972 2.1421 12 6 0.1449 -3.7618 1.7611 13 6 0.8242 -4.5128 0.8735 14 6 0.7228 -6.0119 0.7749 15 6 0.0823 -6.5378 2.0661 16 6 -1.1907 -5.7422 2.3675 17 6 -0.8168 -4.3126 2.7804 18 6 1.6431 -3.5910 0.0691 19 8 2.3904 -3.9063 -0.8340 20 1 -0.4850 -0.8360 -0.0827 21 1 0.1026 -6.2827 -0.0796 22 1 1.7181 -6.4405 0.6575 23 1 0.7849 -6.4254 2.8918 24 1 -0.1684 -7.5916 1.9440 25 1 -1.7362 -6.2236 3.1791 26 1 -1.8182 -5.7105 1.4769 27 1 -0.3437 -4.3256 3.7623 28 1 -1.7127 -3.6927 2.8127 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306450244.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:46 Heat of formation + Delta-G solvation = -42.094643 kcal Electronic energy + Delta-G solvation = -15159.526908 eV Core-core repulsion = 12562.233681 eV Total energy + Delta-G solvation = -2597.293226 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.27127 -37.36495 -37.28259 -34.70525 -32.96362 -30.65290 -30.20193 -25.44633 -23.92053 -23.03655 -21.37983 -19.85783 -18.47276 -17.71681 -15.78135 -15.70104 -14.91425 -14.57607 -14.17189 -13.79459 -13.76802 -13.36789 -12.91820 -12.79742 -12.61726 -12.30973 -11.79474 -11.00228 -10.91810 -10.79159 -10.77507 -10.28439 -10.17962 -9.63240 -9.19193 -8.99139 -8.75862 -8.19491 -6.78236 -4.24676 0.91805 3.30752 3.37125 3.41187 3.55523 3.89073 4.13448 4.34687 4.44630 4.76819 4.90522 5.10425 5.16630 5.34048 5.46162 5.50719 5.62584 5.75324 5.83877 6.01484 6.04422 6.10818 6.32078 6.33014 6.56110 7.50502 7.62767 8.22131 8.32570 8.49213 9.12529 9.45855 10.53542 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.045490 B = 0.009970 C = 0.008571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.371223 B = 2807.725974 C = 3266.016022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.030 3.970 3 Si 1.087 2.913 4 H -0.283 1.283 5 H -0.276 1.276 6 H -0.281 1.281 7 C -0.445 4.445 8 H 0.097 0.903 9 N -0.421 5.421 10 C 0.504 3.496 11 O -0.457 6.457 12 C -0.131 4.131 13 C -0.148 4.148 14 C -0.056 4.056 15 C -0.119 4.119 16 C -0.120 4.120 17 C -0.058 4.058 18 C 0.519 3.481 19 O -0.495 6.495 20 H 0.272 0.728 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.038 -10.415 4.796 11.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.183 4.183 3 Si 0.912 3.088 4 H -0.209 1.209 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.569 4.569 8 H 0.115 0.885 9 N -0.149 5.149 10 C 0.293 3.707 11 O -0.331 6.331 12 C -0.136 4.136 13 C -0.152 4.152 14 C -0.093 4.093 15 C -0.157 4.157 16 C -0.157 4.157 17 C -0.095 4.095 18 C 0.309 3.691 19 O -0.372 6.372 20 H 0.083 0.917 21 H 0.102 0.898 22 H 0.102 0.898 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.051 -8.336 4.694 9.784 hybrid contribution 0.177 -1.665 -0.186 1.685 sum -1.874 -10.002 4.508 11.130 Atomic orbital electron populations 1.70616 1.07366 1.31275 1.36725 1.26549 0.95883 1.02753 0.93162 0.83282 0.74913 0.73559 0.77084 1.20912 1.20131 1.20652 1.20246 1.01868 0.85950 1.48863 0.88531 1.42445 1.37915 1.07375 1.27191 1.18907 0.82305 0.88574 0.80890 1.90686 1.53672 1.40632 1.48088 1.23134 0.98028 0.94527 0.97886 1.23039 0.97846 0.96854 0.97463 1.20225 1.02023 0.88579 0.98479 1.21641 0.97317 0.99260 0.97464 1.21640 0.97616 0.94627 1.01827 1.20249 0.97454 0.95573 0.96225 1.19039 0.82943 0.84002 0.83085 1.90579 1.36670 1.81179 1.28800 0.91719 0.89782 0.89792 0.91479 0.91147 0.91114 0.91438 0.89671 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.20 12.16 55.49 0.67 -24.53 15 2 C 0.03 0.86 4.67 -17.49 -0.08 0.77 15 3 Si 1.09 25.03 29.99 -169.99 -5.10 19.93 15 4 H -0.28 -6.13 7.11 56.52 0.40 -5.72 15 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 7 C -0.45 -13.07 9.59 -14.80 -0.14 -13.21 15 8 H 0.10 2.82 7.95 -52.48 -0.42 2.41 15 9 N -0.42 -11.55 2.57 -62.99 -0.16 -11.71 15 10 C 0.50 12.92 6.71 -12.58 -0.08 12.83 15 11 O -0.46 -12.96 15.45 5.46 0.08 -12.87 15 12 C -0.13 -2.58 6.21 -102.31 -0.64 -3.22 15 13 C -0.15 -2.86 6.21 -102.30 -0.64 -3.49 15 14 C -0.06 -0.79 6.31 -27.72 -0.17 -0.96 15 15 C -0.12 -1.32 5.90 -26.45 -0.16 -1.48 15 16 C -0.12 -1.35 5.90 -26.45 -0.16 -1.51 15 17 C -0.06 -0.84 6.31 -27.72 -0.17 -1.02 15 18 C 0.52 12.89 7.98 -12.58 -0.10 12.79 15 19 O -0.50 -13.18 17.80 5.46 0.10 -13.09 15 20 H 0.27 8.41 7.04 -40.82 -0.29 8.12 15 21 H 0.08 1.10 8.14 -51.93 -0.42 0.67 15 22 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.07 0.73 8.12 -51.93 -0.42 0.31 15 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 15 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 15 26 H 0.07 0.77 8.12 -51.93 -0.42 0.35 15 27 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 28 H 0.09 1.26 8.14 -51.93 -0.42 0.83 15 LS Contribution 245.14 15.07 3.69 3.69 Total: -1.00 -34.02 245.14 -5.93 -39.95 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -2.88 Total: -2.89 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -2.34 Total: 1.51 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.51 Total: -36.24 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: 0.18 Total: -25.96 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.10 Total: 19.93 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -34.02 -5.93 -39.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306450244.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.145 kcal (2) G-P(sol) polarization free energy of solvation -34.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds