Wall clock time and date at job start Mon Mar 30 2020 02:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31464 * 1 3 3 Si 1.86802 * 120.00027 * 2 1 4 4 H 1.48496 * 109.47096 * 270.00039 * 3 2 1 5 5 H 1.48506 * 109.46950 * 29.99840 * 3 2 1 6 6 H 1.48499 * 109.47106 * 149.99597 * 3 2 1 7 7 C 1.38827 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00175 * 154.74716 * 7 2 1 9 9 N 1.37491 * 120.00076 * 334.75259 * 7 2 1 10 10 C 1.34851 * 125.15983 * 327.73325 * 9 7 2 11 11 O 1.21397 * 125.89318 * 0.02562 * 10 9 7 12 12 C 1.47216 * 108.21274 * 179.87146 * 10 9 7 13 13 C 1.34659 * 106.94813 * 0.42253 * 12 10 9 14 14 C 1.50576 * 124.36247 * 179.62829 * 13 12 10 15 15 C 1.53431 * 108.31691 * 343.53907 * 14 13 12 16 16 C 1.53117 * 109.54858 * 49.63412 * 15 14 13 17 17 C 1.50574 * 128.69050 * 180.21798 * 12 10 9 18 18 C 1.34852 * 125.16117 * 148.04302 * 9 7 2 19 19 O 1.21388 * 125.89717 * 359.97438 * 18 9 7 20 20 H 0.97001 * 119.99694 * 174.34977 * 1 2 3 21 21 H 1.09004 * 109.69024 * 103.24634 * 14 13 12 22 22 H 1.08996 * 109.69492 * 223.82972 * 14 13 12 23 23 H 1.08998 * 109.45800 * 289.60748 * 15 14 13 24 24 H 1.09004 * 109.45792 * 169.66187 * 15 14 13 25 25 H 1.08997 * 109.45687 * 170.17112 * 16 15 14 26 26 H 1.08996 * 109.44435 * 50.20912 * 16 15 14 27 27 H 1.08998 * 109.69414 * 283.47688 * 17 12 10 28 28 H 1.08997 * 109.69500 * 44.01883 * 17 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 2.4961 2.0464 -1.4000 5 1 1.4460 2.6527 0.7000 6 1 3.5462 1.4402 0.7001 7 6 2.0088 -1.2023 0.0005 8 1 3.0114 -1.2472 -0.3985 9 7 1.4199 -2.3359 0.5089 10 6 0.5359 -2.3620 1.5269 11 8 0.1301 -1.3972 2.1421 12 6 0.1449 -3.7618 1.7611 13 6 0.8242 -4.5128 0.8735 14 6 0.7228 -6.0119 0.7749 15 6 0.0823 -6.5378 2.0661 16 6 -1.1907 -5.7422 2.3675 17 6 -0.8168 -4.3126 2.7804 18 6 1.6431 -3.5910 0.0691 19 8 2.3904 -3.9063 -0.8340 20 1 -0.4850 -0.8360 -0.0827 21 1 0.1026 -6.2827 -0.0796 22 1 1.7181 -6.4405 0.6575 23 1 0.7849 -6.4254 2.8918 24 1 -0.1684 -7.5916 1.9440 25 1 -1.7362 -6.2236 3.1791 26 1 -1.8182 -5.7105 1.4769 27 1 -0.3437 -4.3256 3.7623 28 1 -1.7127 -3.6927 2.8127 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306450244.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:46 Heat of formation + Delta-G solvation = -65.299251 kcal Electronic energy + Delta-G solvation = -15160.533135 eV Core-core repulsion = 12562.233681 eV Total energy + Delta-G solvation = -2598.299454 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.16219 -39.42740 -38.63517 -36.79158 -34.91820 -31.91692 -31.80323 -27.33110 -25.68526 -24.52598 -22.76556 -21.71408 -19.97898 -19.76902 -17.72745 -17.56513 -16.66402 -16.48596 -15.68119 -15.54704 -15.03610 -14.77550 -14.53367 -14.43526 -14.14582 -13.93458 -13.26103 -12.85846 -12.49991 -12.04143 -11.99427 -11.82561 -11.66252 -11.48088 -11.17722 -10.88901 -10.44306 -10.20464 -9.08375 -6.55153 -0.85442 1.42553 1.50869 1.60821 1.75008 1.98779 2.14213 2.49376 2.78875 3.00209 3.37603 3.93240 4.01142 4.02349 4.24527 4.31905 4.55650 4.58728 4.91608 4.92527 5.03039 5.19539 5.21809 5.29331 5.35452 5.46838 5.50173 5.97730 6.14656 6.50075 6.92726 7.32946 8.23270 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.045490 B = 0.009970 C = 0.008571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.371223 B = 2807.725974 C = 3266.016022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C -0.011 4.011 3 Si 1.133 2.867 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.266 1.266 7 C -0.475 4.475 8 H 0.085 0.915 9 N -0.452 5.452 10 C 0.493 3.507 11 O -0.496 6.496 12 C -0.126 4.126 13 C -0.131 4.131 14 C -0.056 4.056 15 C -0.112 4.112 16 C -0.113 4.113 17 C -0.057 4.057 18 C 0.506 3.494 19 O -0.522 6.522 20 H 0.255 0.745 21 H 0.100 0.900 22 H 0.092 0.908 23 H 0.071 0.929 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 -12.464 5.837 13.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.218 4.218 3 Si 0.950 3.050 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.191 1.191 7 C -0.599 4.599 8 H 0.103 0.897 9 N -0.181 5.181 10 C 0.285 3.715 11 O -0.371 6.371 12 C -0.130 4.130 13 C -0.135 4.135 14 C -0.093 4.093 15 C -0.150 4.150 16 C -0.151 4.151 17 C -0.094 4.094 18 C 0.298 3.702 19 O -0.401 6.401 20 H 0.064 0.936 21 H 0.118 0.882 22 H 0.110 0.890 23 H 0.090 0.910 24 H 0.126 0.874 25 H 0.125 0.875 26 H 0.086 0.914 27 H 0.121 0.879 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.573 -10.431 5.728 12.175 hybrid contribution 0.391 -1.061 -0.546 1.255 sum -2.182 -11.491 5.182 12.793 Atomic orbital electron populations 1.70749 1.08215 1.30091 1.39242 1.28197 0.95921 1.06197 0.91500 0.82774 0.74186 0.69398 0.78655 1.18276 1.19858 1.19090 1.20434 1.01891 0.87625 1.49951 0.89718 1.42818 1.38850 1.08010 1.28435 1.19904 0.80921 0.90989 0.79684 1.90637 1.54652 1.42641 1.49210 1.23300 0.99572 0.90405 0.99726 1.23261 0.95865 0.99049 0.95372 1.20528 1.03347 0.84110 1.01289 1.21680 0.96845 1.01028 0.95412 1.21681 0.98095 0.92080 1.03199 1.20517 0.95877 0.97656 0.95341 1.19990 0.82683 0.84404 0.83097 1.90540 1.37862 1.81619 1.30078 0.93582 0.88199 0.88999 0.90997 0.87395 0.87461 0.91423 0.87871 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -53.56 12.16 21.64 0.26 -53.30 15 2 C -0.01 -0.67 4.67 84.89 0.40 -0.27 15 3 Si 1.13 51.02 29.99 68.60 2.06 53.07 15 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 15 5 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 15 7 C -0.47 -29.04 9.59 83.95 0.80 -28.23 15 8 H 0.08 5.20 7.95 -2.91 -0.02 5.17 15 9 N -0.45 -25.72 2.57 -589.81 -1.52 -27.24 15 10 C 0.49 26.01 6.71 86.59 0.58 26.59 15 11 O -0.50 -29.09 15.45 -3.39 -0.05 -29.15 15 12 C -0.13 -4.84 6.21 -18.36 -0.11 -4.95 15 13 C -0.13 -4.92 6.21 -18.36 -0.11 -5.04 15 14 C -0.06 -1.38 6.31 29.95 0.19 -1.19 15 15 C -0.11 -1.89 5.90 30.78 0.18 -1.71 15 16 C -0.11 -2.01 5.90 30.78 0.18 -1.82 15 17 C -0.06 -1.50 6.31 29.95 0.19 -1.31 15 18 C 0.51 25.67 7.98 86.59 0.69 26.36 15 19 O -0.52 -28.50 17.80 -3.36 -0.06 -28.56 15 20 H 0.25 16.49 7.04 -92.71 -0.65 15.83 15 21 H 0.10 2.22 8.14 -2.38 -0.02 2.21 15 22 H 0.09 2.18 8.14 -2.39 -0.02 2.16 15 23 H 0.07 1.20 8.12 -2.39 -0.02 1.18 15 24 H 0.11 1.14 8.14 -2.38 -0.02 1.12 15 25 H 0.11 1.23 8.14 -2.39 -0.02 1.22 15 26 H 0.07 1.24 8.12 -2.39 -0.02 1.22 15 27 H 0.10 2.38 8.14 -2.39 -0.02 2.37 15 28 H 0.08 2.27 8.14 -2.39 -0.02 2.25 15 Total: -1.00 -78.76 245.14 4.97 -73.79 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: 1.29 Total: 2.96 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 2.99 Total: 8.42 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -1.25 Total: -80.54 kcal Atomic # 8 Polarization: -57.59 SS G_CDS: -0.11 Total: -57.70 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.06 Total: 53.07 kcal Total: -78.76 4.97 -73.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306450244.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.490 kcal (2) G-P(sol) polarization free energy of solvation -78.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds