Wall clock time and date at job start Mon Mar 30 2020 02:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39642 * 120.11443 * 242.24660 * 3 2 1 5 5 C 1.38185 * 119.93421 * 180.02562 * 4 3 2 6 6 F 1.35095 * 119.92282 * 179.97438 * 5 4 3 7 7 C 1.38502 * 120.16162 * 359.93410 * 5 4 3 8 8 C 1.38775 * 120.22711 * 0.02810 * 7 5 4 9 9 O 1.35905 * 119.96862 * 179.97438 * 8 7 5 10 10 C 1.42897 * 117.00015 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47169 * 180.02562 * 10 9 8 12 12 H 1.08009 * 120.00064 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00103 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00220 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99945 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47125 * 89.99952 * 15 13 11 17 17 H 1.48495 * 109.47098 * 209.99837 * 15 13 11 18 18 H 1.48497 * 109.46883 * 329.99936 * 15 13 11 19 19 C 1.38495 * 120.06529 * 0.02562 * 8 7 5 20 20 H 1.08003 * 120.03069 * 0.05171 * 4 3 2 21 21 H 1.07997 * 119.89114 * 180.02562 * 7 5 4 22 22 H 1.08997 * 109.47017 * 299.99636 * 10 9 8 23 23 H 1.08997 * 109.47594 * 59.99819 * 10 9 8 24 24 H 0.97000 * 120.00191 * 179.97438 * 14 13 11 25 25 H 1.08003 * 120.08301 * 179.70934 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2683 0.5634 1.0690 5 6 4.6501 0.5625 1.0649 6 9 5.3275 1.1075 2.0989 7 6 5.3425 0.0034 0.0036 8 6 4.6533 -0.5584 -1.0618 9 8 5.3380 -1.1051 -2.1007 10 6 6.7646 -1.0669 -2.0293 11 6 7.3468 -1.7137 -3.2596 12 1 6.6926 -2.1144 -4.0200 13 6 8.7144 -1.7941 -3.4147 14 7 9.2225 -2.3590 -4.4882 15 14 9.8458 -1.1005 -2.1000 16 1 10.1468 -2.1555 -1.0992 17 1 11.1098 -0.6389 -2.7280 18 1 9.1802 0.0441 -1.4278 19 6 3.2683 -0.5616 -1.0680 20 1 2.7305 0.9987 1.8983 21 1 6.4225 0.0047 0.0051 22 1 7.0979 -0.0307 -1.9718 23 1 7.0986 -1.6056 -1.1426 24 1 10.1847 -2.4152 -4.5975 25 1 2.7316 -0.9946 -1.8992 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306499094.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:21 Heat of formation + Delta-G solvation = -31.657219 kcal Electronic energy + Delta-G solvation = -13636.151205 eV Core-core repulsion = 10915.850275 eV Total energy + Delta-G solvation = -2720.300931 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.97523 -39.91322 -37.64332 -36.10504 -32.97444 -31.09841 -30.34136 -28.32952 -24.53472 -22.63332 -22.14920 -19.33397 -17.32196 -16.96270 -16.25345 -16.08284 -15.81014 -15.68724 -14.98655 -14.56921 -13.93416 -13.86713 -13.38065 -13.21786 -12.75290 -12.29638 -12.10308 -11.72995 -11.53042 -11.22956 -11.18384 -10.43767 -10.11220 -9.53115 -8.98136 -8.87135 -8.15063 -6.34631 -4.38495 0.56246 1.18730 2.47461 2.80289 3.09701 3.15061 3.18174 3.40948 3.69473 3.98893 4.14155 4.24946 4.85978 4.93434 4.95343 5.00906 5.15385 5.79385 5.92105 6.01761 6.02834 6.26941 6.52403 6.56599 7.20710 7.29691 7.69409 8.30420 8.73575 9.19653 10.77353 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.037878 B = 0.006980 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.041071 B = 4010.663861 C = 4734.561687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.265 3.735 3 C 0.034 3.966 4 C -0.163 4.163 5 C 0.142 3.858 6 F -0.134 7.134 7 C -0.226 4.226 8 C 0.180 3.820 9 O -0.289 6.289 10 C 0.163 3.837 11 C -0.534 4.534 12 H 0.088 0.912 13 C 0.080 3.920 14 N -0.884 5.884 15 Si 0.872 3.128 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.264 1.264 19 C -0.123 4.123 20 H 0.142 0.858 21 H 0.149 0.851 22 H 0.024 0.976 23 H 0.020 0.980 24 H 0.271 0.729 25 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.848 5.549 10.517 13.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.051 4.051 3 C 0.031 3.969 4 C -0.185 4.185 5 C 0.122 3.878 6 F -0.112 7.112 7 C -0.246 4.246 8 C 0.131 3.869 9 O -0.200 6.200 10 C 0.090 3.910 11 C -0.571 4.571 12 H 0.106 0.894 13 C -0.124 4.124 14 N -0.521 5.521 15 Si 0.698 3.302 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.189 1.189 19 C -0.145 4.145 20 H 0.159 0.841 21 H 0.167 0.833 22 H 0.042 0.958 23 H 0.037 0.963 24 H 0.081 0.919 25 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.446 5.411 10.251 14.342 hybrid contribution 1.576 0.478 0.929 1.891 sum -6.869 5.889 11.180 14.383 Atomic orbital electron populations 1.81244 1.11861 1.08258 1.07605 1.25418 0.92298 0.93704 0.93638 1.15219 0.84198 1.01823 0.95678 1.20761 0.92185 1.05420 1.00119 1.17036 0.89198 0.96304 0.85239 1.91519 1.80162 1.83299 1.56246 1.21596 1.02438 1.05473 0.95083 1.18694 0.91255 0.89894 0.87062 1.86247 1.23757 1.72092 1.37946 1.21174 0.72959 0.97378 0.99460 1.20715 0.92455 1.39733 1.04244 0.89355 1.24696 0.97412 0.94529 0.95737 1.69839 1.12952 1.42490 1.26781 0.86911 0.81088 0.80092 0.82116 1.19499 1.20301 1.18875 1.20436 0.91466 1.03243 0.99310 0.84064 0.83301 0.95796 0.96251 0.91864 0.83507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.84 18.54 41.84 0.78 -5.06 15 2 C 0.27 3.27 15.33 -22.48 -0.34 2.93 15 3 C 0.03 0.41 5.73 -106.96 -0.61 -0.21 15 4 C -0.16 -1.82 9.73 -39.08 -0.38 -2.20 15 5 C 0.14 1.83 7.29 -39.50 -0.29 1.54 15 6 F -0.13 -1.74 17.26 2.25 0.04 -1.70 15 7 C -0.23 -3.34 9.01 -39.29 -0.35 -3.69 15 8 C 0.18 2.88 6.68 -39.29 -0.26 2.62 15 9 O -0.29 -5.85 10.12 -19.44 -0.20 -6.04 15 10 C 0.16 3.62 3.56 36.00 0.13 3.75 15 11 C -0.53 -14.40 9.99 -34.44 -0.34 -14.74 15 12 H 0.09 2.62 8.06 -52.48 -0.42 2.19 15 13 C 0.08 2.17 5.47 -17.82 -0.10 2.07 15 14 N -0.88 -25.46 13.96 55.43 0.77 -24.68 15 15 Si 0.87 19.42 27.47 -169.99 -4.67 14.75 15 16 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 18 H -0.26 -5.50 6.54 56.52 0.37 -5.13 15 19 C -0.12 -1.63 9.69 -39.00 -0.38 -2.01 15 20 H 0.14 1.26 8.06 -52.48 -0.42 0.84 15 21 H 0.15 2.26 6.28 -52.49 -0.33 1.93 15 22 H 0.02 0.52 6.71 -51.93 -0.35 0.17 15 23 H 0.02 0.41 7.09 -51.93 -0.37 0.05 15 24 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 25 H 0.15 1.78 8.06 -52.48 -0.42 1.36 15 LS Contribution 243.11 15.07 3.66 3.66 Total: -1.00 -27.94 243.11 -4.03 -31.97 By element: Atomic # 1 Polarization: -1.46 SS G_CDS: -1.48 Total: -2.94 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -2.93 Total: -9.96 kcal Atomic # 7 Polarization: -31.30 SS G_CDS: 1.55 Total: -29.75 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.20 Total: -6.04 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.67 Total: 14.75 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -27.94 -4.03 -31.97 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306499094.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.314 kcal (2) G-P(sol) polarization free energy of solvation -27.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds