Wall clock time and date at job start Mon Mar 30 2020 02:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39642 * 120.11443 * 242.24660 * 3 2 1 5 5 C 1.38185 * 119.93421 * 180.02562 * 4 3 2 6 6 F 1.35095 * 119.92282 * 179.97438 * 5 4 3 7 7 C 1.38502 * 120.16162 * 359.93410 * 5 4 3 8 8 C 1.38775 * 120.22711 * 0.02810 * 7 5 4 9 9 O 1.35905 * 119.96862 * 179.97438 * 8 7 5 10 10 C 1.42897 * 117.00015 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47169 * 180.02562 * 10 9 8 12 12 H 1.08009 * 120.00064 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00103 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00220 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99945 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47125 * 89.99952 * 15 13 11 17 17 H 1.48495 * 109.47098 * 209.99837 * 15 13 11 18 18 H 1.48497 * 109.46883 * 329.99936 * 15 13 11 19 19 C 1.38495 * 120.06529 * 0.02562 * 8 7 5 20 20 H 1.08003 * 120.03069 * 0.05171 * 4 3 2 21 21 H 1.07997 * 119.89114 * 180.02562 * 7 5 4 22 22 H 1.08997 * 109.47017 * 299.99636 * 10 9 8 23 23 H 1.08997 * 109.47594 * 59.99819 * 10 9 8 24 24 H 0.97000 * 120.00191 * 179.97438 * 14 13 11 25 25 H 1.08003 * 120.08301 * 179.70934 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2683 0.5634 1.0690 5 6 4.6501 0.5625 1.0649 6 9 5.3275 1.1075 2.0989 7 6 5.3425 0.0034 0.0036 8 6 4.6533 -0.5584 -1.0618 9 8 5.3380 -1.1051 -2.1007 10 6 6.7646 -1.0669 -2.0293 11 6 7.3468 -1.7137 -3.2596 12 1 6.6926 -2.1144 -4.0200 13 6 8.7144 -1.7941 -3.4147 14 7 9.2225 -2.3590 -4.4882 15 14 9.8458 -1.1005 -2.1000 16 1 10.1468 -2.1555 -1.0992 17 1 11.1098 -0.6389 -2.7280 18 1 9.1802 0.0441 -1.4278 19 6 3.2683 -0.5616 -1.0680 20 1 2.7305 0.9987 1.8983 21 1 6.4225 0.0047 0.0051 22 1 7.0979 -0.0307 -1.9718 23 1 7.0986 -1.6056 -1.1426 24 1 10.1847 -2.4152 -4.5975 25 1 2.7316 -0.9946 -1.8992 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306499094.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:21 Heat of formation + Delta-G solvation = -48.360541 kcal Electronic energy + Delta-G solvation = -13636.875516 eV Core-core repulsion = 10915.850275 eV Total energy + Delta-G solvation = -2721.025241 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.98667 -41.13815 -38.88963 -37.23074 -34.97751 -32.18646 -31.68312 -29.98690 -25.82995 -23.97803 -23.57814 -20.54327 -19.15551 -18.18297 -17.43573 -17.21352 -16.96461 -16.95337 -16.34955 -16.28129 -15.08490 -15.00173 -14.71986 -14.43700 -14.25913 -13.51664 -13.45721 -13.11530 -12.81832 -12.72662 -12.70831 -11.94000 -11.76786 -11.50192 -10.88297 -10.04638 -9.34208 -8.40632 -6.51851 -0.49124 0.12767 1.36209 1.38192 1.45335 1.47920 1.74352 2.21982 2.27292 2.65451 2.76797 2.92382 3.18685 3.83423 3.88634 3.96702 4.06626 4.39273 4.71662 4.79711 4.86519 5.01777 5.06628 5.32461 5.47871 5.93439 6.29870 6.52090 6.64032 7.11803 8.75608 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.037878 B = 0.006980 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.041071 B = 4010.663861 C = 4734.561687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.287 3.713 3 C 0.044 3.956 4 C -0.133 4.133 5 C 0.142 3.858 6 F -0.131 7.131 7 C -0.226 4.226 8 C 0.150 3.850 9 O -0.318 6.318 10 C 0.175 3.825 11 C -0.554 4.554 12 H 0.038 0.962 13 C 0.020 3.980 14 N -0.936 5.936 15 Si 0.947 3.053 16 H -0.258 1.258 17 H -0.276 1.276 18 H -0.236 1.236 19 C -0.114 4.114 20 H 0.174 0.826 21 H 0.145 0.855 22 H 0.036 0.964 23 H 0.035 0.965 24 H 0.275 0.725 25 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.143 7.017 13.294 16.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.028 4.028 3 C 0.040 3.960 4 C -0.155 4.155 5 C 0.122 3.878 6 F -0.109 7.109 7 C -0.246 4.246 8 C 0.103 3.897 9 O -0.231 6.231 10 C 0.101 3.899 11 C -0.592 4.592 12 H 0.057 0.943 13 C -0.179 4.179 14 N -0.574 5.574 15 Si 0.768 3.232 16 H -0.182 1.182 17 H -0.201 1.201 18 H -0.159 1.159 19 C -0.136 4.136 20 H 0.192 0.808 21 H 0.163 0.837 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.085 0.915 25 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.781 6.889 13.045 17.168 hybrid contribution 1.513 0.018 0.064 1.515 sum -7.268 6.907 13.109 16.503 Atomic orbital electron populations 1.81289 1.12647 1.09171 1.08458 1.25238 0.91955 0.92845 0.92801 1.15068 0.83783 1.01707 0.95433 1.21057 0.91517 1.02810 1.00070 1.16954 0.89633 0.96355 0.84828 1.91535 1.80246 1.83208 1.55959 1.21598 1.02428 1.05307 0.95261 1.18813 0.91890 0.91996 0.87023 1.86158 1.22618 1.73968 1.40318 1.20820 0.74417 0.97361 0.97260 1.21013 0.92656 1.40215 1.05309 0.94330 1.25750 0.99213 0.94576 0.98361 1.70002 1.13661 1.44315 1.29459 0.85734 0.78294 0.80371 0.78851 1.18199 1.20069 1.15933 1.20504 0.90551 1.02600 0.99916 0.80845 0.83685 0.94617 0.94752 0.91548 0.82870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -11.40 18.54 19.00 0.35 -11.04 15 2 C 0.29 6.26 15.33 88.33 1.35 7.61 15 3 C 0.04 0.89 5.73 -21.38 -0.12 0.77 15 4 C -0.13 -2.42 9.73 22.60 0.22 -2.20 15 5 C 0.14 3.16 7.29 22.32 0.16 3.32 15 6 F -0.13 -2.93 17.26 44.97 0.78 -2.15 15 7 C -0.23 -6.16 9.01 22.46 0.20 -5.96 15 8 C 0.15 4.62 6.68 22.46 0.15 4.77 15 9 O -0.32 -12.97 10.12 -92.48 -0.94 -13.91 15 10 C 0.18 7.72 3.56 71.24 0.25 7.97 15 11 C -0.55 -30.97 9.99 25.60 0.26 -30.72 15 12 H 0.04 2.45 8.06 -2.91 -0.02 2.42 15 13 C 0.02 1.12 5.47 84.65 0.46 1.58 15 14 N -0.94 -55.76 13.96 21.45 0.30 -55.47 15 15 Si 0.95 39.41 27.47 68.60 1.88 41.29 15 16 H -0.26 -10.18 7.11 99.48 0.71 -9.48 15 17 H -0.28 -11.30 7.11 99.48 0.71 -10.59 15 18 H -0.24 -8.71 6.54 99.48 0.65 -8.05 15 19 C -0.11 -2.84 9.69 22.65 0.22 -2.62 15 20 H 0.17 2.13 8.06 -2.91 -0.02 2.11 15 21 H 0.15 4.06 6.28 -2.91 -0.02 4.04 15 22 H 0.04 1.48 6.71 -2.39 -0.02 1.47 15 23 H 0.03 1.41 7.09 -2.39 -0.02 1.39 15 24 H 0.28 15.06 8.31 -92.71 -0.77 14.29 15 25 H 0.15 3.55 8.06 -2.91 -0.02 3.53 15 Total: -1.00 -62.33 243.11 6.71 -55.62 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: 1.17 Total: 1.12 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 3.16 Total: -15.47 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: 0.65 Total: -66.51 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.94 Total: -13.91 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.78 Total: -2.15 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 1.88 Total: 41.29 kcal Total: -62.33 6.71 -55.62 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306499094.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.261 kcal (2) G-P(sol) polarization free energy of solvation -62.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds