Wall clock time and date at job start Mon Mar 30 2020 02:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.28515 * 124.29257 * 2 1 4 4 C 1.32778 * 117.98923 * 180.02562 * 3 2 1 5 5 C 1.40702 * 112.14096 * 359.97438 * 4 3 2 6 6 N 1.32774 * 119.51936 * 179.97438 * 5 4 3 7 7 C 1.31788 * 121.74578 * 359.97438 * 6 5 4 8 8 N 1.31314 * 123.06913 * 359.97438 * 7 6 5 9 9 C 1.34058 * 121.16054 * 0.02562 * 8 7 6 10 10 C 1.40689 * 121.04547 * 179.97438 * 9 8 7 11 11 H 1.08008 * 120.00169 * 180.02562 * 10 9 8 12 12 C 1.40271 * 120.00024 * 0.02562 * 10 9 8 13 13 N 1.30612 * 120.00145 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00090 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47126 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47014 * 120.00064 * 14 12 10 17 17 H 1.48502 * 109.47197 * 240.00018 * 14 12 10 18 18 S 1.70735 * 124.29260 * 180.02562 * 2 1 3 19 19 H 1.08994 * 109.46894 * 180.02562 * 1 2 3 20 20 H 1.09007 * 109.46688 * 300.01774 * 1 2 3 21 21 H 1.08995 * 109.47266 * 60.01884 * 1 2 3 22 22 H 1.07997 * 118.46583 * 180.02562 * 7 6 5 23 23 H 0.97003 * 120.00391 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2311 1.0618 0.0000 4 6 3.5509 0.9160 -0.0005 5 6 3.9349 -0.4376 -0.0004 6 7 5.2249 -0.7517 -0.0014 7 6 6.1637 0.1732 -0.0030 8 7 5.9019 1.4600 -0.0042 9 6 4.6394 1.9109 -0.0034 10 6 4.3616 3.2901 -0.0041 11 1 3.3380 3.6349 -0.0030 12 6 5.4140 4.2175 -0.0063 13 7 6.6518 3.8007 -0.0082 14 14 5.0452 6.0488 -0.0081 15 1 3.5749 6.2576 -0.0074 16 1 5.6350 6.6737 1.2031 17 1 5.6324 6.6709 -1.2219 18 16 2.4690 -1.4106 -0.0006 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5142 0.8899 21 1 -0.3633 0.5135 -0.8901 22 1 7.1967 -0.1418 -0.0042 23 1 7.3796 4.4420 -0.0093 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306539832.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:07 Heat of formation + Delta-G solvation = 58.373507 kcal Electronic energy + Delta-G solvation = -12246.225023 eV Core-core repulsion = 9992.500950 eV Total energy + Delta-G solvation = -2253.724073 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.032 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.39811 -36.79775 -34.45948 -31.60084 -30.93808 -28.26261 -26.10523 -23.48115 -22.04128 -20.42641 -18.29296 -17.02692 -16.30753 -15.32034 -15.15982 -14.34685 -13.65488 -13.10969 -12.94570 -12.63226 -12.00125 -11.81717 -11.65314 -11.27590 -11.26271 -10.84544 -10.49333 -10.26978 -9.72283 -9.27122 -8.68038 -7.94799 -7.65146 -7.60661 -6.85986 -5.10795 1.50515 2.10220 2.51483 2.74475 2.86099 2.93605 2.97672 3.58541 3.60633 4.36095 4.93093 5.50550 5.55228 5.69033 5.85854 5.94016 6.06204 6.15888 6.32059 6.58159 7.07689 7.37352 7.72086 7.96469 8.28419 8.55877 8.90881 9.66616 9.87797 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.036070 B = 0.010200 C = 0.007986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.082127 B = 2744.336201 C = 3505.273606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.024 4.024 3 N -0.409 5.409 4 C -0.110 4.110 5 C 0.102 3.898 6 N -0.611 5.611 7 C 0.325 3.675 8 N -0.529 5.529 9 C 0.298 3.702 10 C -0.339 4.339 11 H 0.106 0.894 12 C 0.053 3.947 13 N -0.673 5.673 14 Si 0.925 3.075 15 H -0.252 1.252 16 H -0.266 1.266 17 H -0.266 1.266 18 S 0.058 5.942 19 H 0.067 0.933 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.169 0.831 23 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.839 -0.514 0.001 4.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.305 4.305 3 N -0.122 5.122 4 C -0.245 4.245 5 C -0.152 4.152 6 N -0.340 5.340 7 C 0.031 3.969 8 N -0.251 5.251 9 C 0.169 3.831 10 C -0.371 4.371 11 H 0.124 0.876 12 C -0.179 4.179 13 N -0.291 5.291 14 Si 0.747 3.253 15 H -0.175 1.175 16 H -0.191 1.191 17 H -0.191 1.191 18 S 0.304 5.696 19 H 0.086 0.914 20 H 0.091 0.909 21 H 0.091 0.909 22 H 0.186 0.814 23 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.192 -1.215 -0.002 4.364 hybrid contribution -0.131 1.500 0.002 1.506 sum -4.322 0.285 0.000 4.332 Atomic orbital electron populations 1.20106 0.86488 1.01923 1.02927 1.25952 1.00233 0.90036 1.14281 1.65015 1.05292 1.31105 1.10743 1.21468 0.89759 0.94026 1.19252 1.24502 0.97604 0.93111 0.99999 1.67305 0.97971 1.38918 1.29836 1.24394 0.97333 0.85540 0.89628 1.69298 1.18721 1.14098 1.22946 1.19464 0.83698 0.91744 0.88243 1.20075 0.95576 0.88879 1.32550 0.87635 1.26466 0.94482 1.03116 0.93786 1.70048 0.99947 1.37498 1.21639 0.85951 0.80904 0.79273 0.79194 1.17521 1.19073 1.19080 1.83063 0.97685 1.11755 1.77054 0.91409 0.90883 0.90882 0.81425 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.80 10.46 36.01 0.38 -0.42 14 2 C -0.02 -0.50 7.31 -13.66 -0.10 -0.60 14 3 N -0.41 -10.04 10.50 -7.34 -0.08 -10.12 14 4 C -0.11 -2.95 7.07 -82.76 -0.59 -3.53 14 5 C 0.10 2.60 7.80 -16.21 -0.13 2.48 14 6 N -0.61 -15.60 10.40 -13.33 -0.14 -15.74 14 7 C 0.33 8.05 12.21 -92.57 -1.13 6.92 14 8 N -0.53 -14.25 8.03 -11.02 -0.09 -14.34 14 9 C 0.30 8.20 6.76 -82.21 -0.56 7.64 14 10 C -0.34 -8.71 9.22 -37.89 -0.35 -9.06 14 11 H 0.11 2.62 7.85 -52.48 -0.41 2.21 14 12 C 0.05 1.23 5.50 -17.31 -0.10 1.13 14 13 N -0.67 -16.16 11.54 55.56 0.64 -15.52 14 14 Si 0.92 16.83 29.56 -169.99 -5.03 11.80 14 15 H -0.25 -4.57 7.11 56.52 0.40 -4.17 14 16 H -0.27 -4.72 7.11 56.52 0.40 -4.31 14 17 H -0.27 -4.72 7.11 56.52 0.40 -4.32 14 18 S 0.06 1.19 23.09 -107.50 -2.48 -1.29 14 19 H 0.07 0.82 8.11 -51.93 -0.42 0.40 14 20 H 0.07 1.01 8.14 -51.93 -0.42 0.58 14 21 H 0.07 1.01 8.14 -51.93 -0.42 0.58 14 22 H 0.17 3.49 8.06 -52.49 -0.42 3.07 14 23 H 0.29 6.02 8.29 -40.82 -0.34 5.68 14 LS Contribution 229.37 15.07 3.46 3.46 Total: -1.00 -29.94 229.37 -7.52 -37.46 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -1.24 Total: -0.27 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -2.57 Total: 4.57 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.34 Total: -55.72 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.03 Total: 11.80 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.48 Total: -1.29 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -29.94 -7.52 -37.46 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306539832.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.833 kcal (2) G-P(sol) polarization free energy of solvation -29.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds