Wall clock time and date at job start Mon Mar 30 2020 03:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00224 * 2 1 4 4 H 1.48500 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46891 * 299.99635 * 3 2 1 6 6 H 1.48499 * 109.47148 * 59.99459 * 3 2 1 7 7 C 1.37878 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00042 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00071 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47329 * 179.97438 * 9 7 2 11 11 C 1.38256 * 119.88151 * 89.99704 * 10 9 7 12 12 C 1.38990 * 120.22745 * 180.02562 * 11 10 9 13 13 N 1.39705 * 120.00182 * 180.02562 * 12 11 10 14 14 C 1.38671 * 119.99946 * 0.02562 * 12 11 10 15 15 C 1.39508 * 119.76355 * 359.97438 * 14 12 11 16 16 C 1.47743 * 120.11172 * 180.02562 * 15 14 12 17 17 O 1.21468 * 120.00440 * 180.02562 * 16 15 14 18 18 O 1.34711 * 120.00226 * 0.02562 * 16 15 14 19 19 C 1.37963 * 119.88276 * 270.32068 * 10 9 7 20 20 H 0.96999 * 120.00200 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47148 * 59.99283 * 9 7 2 22 22 H 1.09007 * 109.47015 * 299.99664 * 9 7 2 23 23 H 1.08001 * 119.88688 * 0.02562 * 11 10 9 24 24 H 0.97009 * 120.00173 * 179.97438 * 13 12 11 25 25 H 0.96999 * 119.99917 * 359.97438 * 13 12 11 26 26 H 1.07997 * 120.11783 * 180.02562 * 14 12 11 27 27 H 0.96700 * 117.00324 * 180.02562 * 18 16 15 28 28 H 1.08005 * 120.00456 * 359.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6779 -4.1681 1.1993 12 6 3.5815 -5.2242 1.2077 13 7 4.0304 -5.7499 2.4217 14 6 4.0376 -5.7560 0.0110 15 6 3.5857 -5.2276 -1.1985 16 6 4.0661 -5.7887 -2.4781 17 8 3.6718 -5.3269 -3.5300 18 8 4.9415 -6.8127 -2.4782 19 6 2.6821 -4.1627 -1.1957 20 1 -0.4850 0.8400 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8904 23 1 2.3243 -3.7550 2.1324 24 1 4.6607 -6.4872 2.4276 25 1 3.7117 -5.3776 3.2588 26 1 4.7393 -6.5769 0.0152 27 1 5.2273 -7.1458 -3.3398 28 1 2.3336 -3.7477 -2.1299 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306670973.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:18 Heat of formation + Delta-G solvation = -80.419460 kcal Electronic energy + Delta-G solvation = -14154.266184 eV Core-core repulsion = 11555.311069 eV Total energy + Delta-G solvation = -2598.955115 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.08229 -38.55443 -35.89706 -34.56787 -33.11010 -31.38551 -28.54421 -27.03727 -24.38914 -23.36496 -20.70669 -20.36878 -17.82306 -16.98136 -16.36637 -16.14473 -15.45282 -15.36093 -14.99813 -14.46772 -13.87345 -13.06964 -12.88565 -12.49713 -12.09153 -11.41913 -11.35980 -11.28513 -11.05655 -10.67025 -10.54360 -10.33063 -10.21284 -9.60256 -9.42446 -8.43461 -8.11206 -7.18022 -6.05254 -4.08924 1.19288 2.13632 2.97554 3.25368 3.30039 3.37842 3.43065 4.11572 4.35304 4.51273 5.27570 5.30753 5.42919 5.80564 5.88214 6.07355 6.09538 6.50098 6.57898 6.66730 6.93198 7.07956 7.29229 7.52186 7.73397 7.83232 7.90791 7.99470 8.12210 8.29067 8.96238 9.55089 11.04848 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.027675 B = 0.007655 C = 0.006600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.491637 B = 3657.025472 C = 4241.097321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.059 0.941 9 C 0.047 3.953 10 C -0.003 4.003 11 C -0.157 4.157 12 C 0.194 3.806 13 N -0.884 5.884 14 C -0.168 4.168 15 C -0.092 4.092 16 C 0.528 3.472 17 O -0.515 6.515 18 O -0.517 6.517 19 C -0.104 4.104 20 H 0.262 0.738 21 H 0.033 0.967 22 H 0.032 0.968 23 H 0.124 0.876 24 H 0.393 0.607 25 H 0.397 0.603 26 H 0.124 0.876 27 H 0.407 0.593 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.055 -12.310 1.903 14.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.077 0.923 9 C 0.010 3.990 10 C -0.004 4.004 11 C -0.180 4.180 12 C 0.092 3.908 13 N -0.425 5.425 14 C -0.191 4.191 15 C -0.094 4.094 16 C 0.373 3.627 17 O -0.405 6.405 18 O -0.328 6.328 19 C -0.124 4.124 20 H 0.071 0.929 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.142 0.858 24 H 0.220 0.780 25 H 0.224 0.776 26 H 0.142 0.858 27 H 0.264 0.736 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.647 -11.891 1.950 14.272 hybrid contribution 0.807 0.585 -0.237 1.025 sum 8.454 -11.306 1.713 14.221 Atomic orbital electron populations 1.69960 1.06029 1.26770 1.50455 1.24998 0.94879 0.99269 0.95113 0.86476 0.80165 0.83447 0.77619 1.19646 1.20883 1.20981 1.21077 0.93134 0.89724 1.51073 0.92305 1.18405 0.92481 0.89334 0.98777 1.20405 0.95064 0.94251 0.90700 1.20846 1.00398 0.97500 0.99226 1.17640 0.93842 0.93247 0.86097 1.42335 1.53669 1.41473 1.04980 1.20511 1.04909 1.03513 0.90203 1.18683 1.01899 0.99527 0.89272 1.21167 0.75190 0.76424 0.89907 1.90871 1.56160 1.59592 1.33853 1.84592 1.58987 1.48958 1.40268 1.21034 0.97052 0.94923 0.99421 0.92853 0.94843 0.94982 0.85829 0.77958 0.77560 0.85776 0.73562 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.48 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 15 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 7 C -0.51 -14.23 9.09 -34.44 -0.31 -14.55 15 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 15 9 C 0.05 1.19 5.09 -29.04 -0.15 1.04 15 10 C 0.00 -0.07 5.06 -104.72 -0.53 -0.60 15 11 C -0.16 -2.92 9.53 -39.30 -0.37 -3.30 15 12 C 0.19 3.06 6.75 -83.83 -0.57 2.49 15 13 N -0.88 -10.15 9.09 32.39 0.29 -9.85 15 14 C -0.17 -2.66 9.46 -38.95 -0.37 -3.02 15 15 C -0.09 -1.65 5.87 -105.01 -0.62 -2.27 15 16 C 0.53 8.75 8.27 34.62 0.29 9.04 15 17 O -0.52 -9.96 17.13 -19.24 -0.33 -10.29 15 18 O -0.52 -6.29 12.68 -40.52 -0.51 -6.81 15 19 C -0.10 -2.14 9.24 -39.15 -0.36 -2.51 15 20 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 21 H 0.03 0.90 8.08 -51.93 -0.42 0.48 15 22 H 0.03 0.84 8.08 -51.93 -0.42 0.42 15 23 H 0.12 2.19 8.06 -52.49 -0.42 1.77 15 24 H 0.39 3.55 8.84 -40.82 -0.36 3.19 15 25 H 0.40 3.95 8.84 -40.82 -0.36 3.59 15 26 H 0.12 1.66 7.61 -52.49 -0.40 1.26 15 27 H 0.41 2.93 9.11 45.56 0.42 3.34 15 28 H 0.13 2.83 7.64 -52.48 -0.40 2.42 15 LS Contribution 259.19 15.07 3.91 3.91 Total: -1.00 -32.32 259.19 -5.93 -38.24 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -1.91 Total: 5.88 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -3.09 Total: -12.11 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 1.03 Total: -35.33 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.84 Total: -17.10 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.32 -5.93 -38.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306670973.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.176 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds