Wall clock time and date at job start Mon Mar 30 2020 03:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36520 * 120.15582 * 2 1 4 4 C 1.50698 * 119.85206 * 0.02562 * 3 2 1 5 5 C 1.38776 * 120.29751 * 180.27399 * 3 2 1 6 6 N 1.48012 * 119.70268 * 179.75749 * 5 3 2 7 7 O 1.31698 * 120.00534 * 170.35739 * 6 5 3 8 8 O 1.31707 * 119.99618 * 350.35214 * 6 5 3 9 9 C 1.38821 * 120.60045 * 359.74176 * 5 3 2 10 10 C 1.36488 * 120.29808 * 0.02562 * 9 5 3 11 11 C 1.41266 * 120.15020 * 179.77982 * 2 1 3 12 12 C 1.40340 * 120.28945 * 0.02562 * 11 2 1 13 13 H 1.08002 * 120.00276 * 334.06769 * 12 11 2 14 14 C 1.46542 * 120.00083 * 154.34599 * 12 11 2 15 15 N 1.29513 * 119.99710 * 342.91622 * 14 12 11 16 16 Si 1.86796 * 120.00463 * 162.91148 * 14 12 11 17 17 H 1.48500 * 109.46833 * 94.93241 * 16 14 12 18 18 H 1.48498 * 109.47433 * 214.92909 * 16 14 12 19 19 H 1.48504 * 109.47070 * 334.93533 * 16 14 12 20 20 H 1.09005 * 109.47038 * 270.22283 * 1 2 3 21 21 H 1.09003 * 109.46743 * 30.21976 * 1 2 3 22 22 H 1.08992 * 109.47034 * 150.21913 * 1 2 3 23 23 H 1.09001 * 109.46779 * 261.07097 * 4 3 2 24 24 H 1.09000 * 109.47023 * 21.07328 * 4 3 2 25 25 H 1.09000 * 109.46928 * 141.07362 * 4 3 2 26 26 H 1.08004 * 119.85342 * 179.97438 * 9 5 3 27 27 H 1.07994 * 120.15817 * 179.97438 * 10 9 5 28 28 H 0.97001 * 119.99690 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1804 0.0000 4 6 1.4395 2.4856 0.0006 5 6 3.5806 1.1839 -0.0057 6 7 4.3108 2.4713 -0.0111 7 8 5.6145 2.4898 0.1745 8 8 3.6567 3.5985 -0.2016 9 6 4.2902 -0.0093 -0.0061 10 6 3.6294 -1.2035 -0.0014 11 6 2.2166 -1.2215 0.0047 12 6 1.5242 -2.4423 0.0088 13 1 0.5260 -2.4956 0.4177 14 6 2.1580 -3.6460 -0.5360 15 7 3.1926 -3.5401 -1.3079 16 14 1.4739 -5.3329 -0.1172 17 1 0.5408 -5.7682 -1.1872 18 1 2.5899 -6.3064 -0.0076 19 1 0.7471 -5.2652 1.1761 20 1 -0.3633 0.0040 1.0277 21 1 -0.3633 0.8880 -0.5173 22 1 -0.3633 -0.8919 -0.5104 23 1 1.3957 2.8802 -1.0145 24 1 0.4275 2.3208 0.3705 25 1 1.9506 3.1998 0.6463 26 1 5.3701 0.0075 -0.0111 27 1 4.1837 -2.1303 -0.0022 28 1 3.6119 -4.3369 -1.6688 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306814361.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:21 Heat of formation + Delta-G solvation = 13.625889 kcal Electronic energy + Delta-G solvation = -14673.700603 eV Core-core repulsion = 12078.823600 eV Total energy + Delta-G solvation = -2594.877003 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.96551 -36.91560 -34.61461 -33.19354 -32.23499 -31.43373 -27.42584 -27.08939 -25.35844 -23.59535 -20.81437 -19.85720 -17.89297 -16.64915 -16.57260 -15.92293 -14.81564 -14.44731 -14.23954 -13.20110 -13.08942 -12.58862 -12.31643 -12.15211 -12.05078 -11.74794 -11.67507 -11.43771 -11.09677 -10.77682 -10.43265 -10.03078 -9.86807 -9.71875 -9.45446 -9.16427 -8.21448 -7.90783 -7.69767 -5.17496 0.79657 2.31956 2.56407 2.58098 2.65097 2.79633 2.88347 3.26097 3.78391 4.87199 5.62288 5.66791 5.94237 6.01196 6.06911 6.25299 6.29525 6.39002 6.41229 6.55731 6.66526 6.69869 6.86317 6.99220 7.19056 7.26906 7.44068 7.53213 7.77916 7.94027 8.19729 8.42322 9.09322 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.041609 B = 0.008572 C = 0.007280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.765806 B = 3265.810241 C = 3845.156668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.196 4.196 3 C 0.014 3.986 4 C -0.119 4.119 5 C -0.125 4.125 6 N 0.043 4.957 7 O -0.313 6.313 8 O -0.297 6.297 9 C -0.044 4.044 10 C -0.167 4.167 11 C 0.114 3.886 12 C -0.368 4.368 13 H 0.106 0.894 14 C 0.060 3.940 15 N -0.709 5.709 16 Si 0.930 3.070 17 H -0.258 1.258 18 H -0.265 1.265 19 H -0.248 1.248 20 H 0.050 0.950 21 H 0.052 0.948 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.084 0.916 26 H 0.117 0.883 27 H 0.131 0.869 28 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.811 -6.098 0.959 8.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.198 4.198 3 C 0.012 3.988 4 C -0.176 4.176 5 C -0.226 4.226 6 N 0.472 4.528 7 O -0.471 6.471 8 O -0.457 6.457 9 C -0.064 4.064 10 C -0.188 4.188 11 C 0.110 3.890 12 C -0.393 4.393 13 H 0.124 0.876 14 C -0.173 4.173 15 N -0.327 5.327 16 Si 0.751 3.249 17 H -0.183 1.183 18 H -0.189 1.189 19 H -0.171 1.171 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.102 0.898 26 H 0.135 0.865 27 H 0.148 0.852 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.717 -6.402 0.799 8.621 hybrid contribution 0.291 -0.361 -0.037 0.465 sum -5.427 -6.763 0.762 8.705 Atomic orbital electron populations 1.20476 0.91916 1.01568 1.00536 1.19326 0.95096 0.91049 1.14354 1.18831 0.90232 0.95809 0.93909 1.21162 0.98802 0.94514 1.03083 1.19623 0.90537 0.80188 1.32227 1.50064 1.02112 1.03877 0.96754 1.96106 0.91956 1.96125 1.62901 1.96038 1.67708 1.20461 1.61539 1.20200 0.99379 0.90441 0.96373 1.21049 0.94064 0.96034 1.07676 1.17778 0.92133 0.92015 0.87039 1.21547 1.01279 0.90771 1.25694 0.87593 1.27903 0.93590 1.03512 0.92259 1.69103 1.13695 1.35204 1.14735 0.85890 0.80183 0.77601 0.81232 1.18287 1.18903 1.17093 0.93149 0.92872 0.91713 0.91141 0.92452 0.89752 0.86479 0.85166 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 8.56 36.01 0.31 -1.22 15 2 C -0.20 -4.18 5.92 -104.09 -0.62 -4.80 15 3 C 0.01 0.32 5.84 -105.04 -0.61 -0.29 15 4 C -0.12 -2.37 7.89 36.00 0.28 -2.09 15 5 C -0.13 -3.12 6.87 -79.54 -0.55 -3.66 15 6 N 0.04 1.15 4.98 34.16 0.17 1.32 15 7 O -0.31 -8.63 19.17 -31.57 -0.60 -9.23 15 8 O -0.30 -7.79 15.98 -31.57 -0.50 -8.29 15 9 C -0.04 -1.04 9.51 -40.00 -0.38 -1.42 15 10 C -0.17 -3.82 8.72 -39.05 -0.34 -4.16 15 11 C 0.11 2.54 5.60 -106.80 -0.60 1.95 15 12 C -0.37 -7.45 8.40 -35.45 -0.30 -7.75 15 13 H 0.11 1.95 6.97 -52.49 -0.37 1.58 15 14 C 0.06 1.12 5.31 -15.18 -0.08 1.04 15 15 N -0.71 -13.96 11.12 55.99 0.62 -13.34 15 16 Si 0.93 13.57 29.67 -169.99 -5.04 8.52 15 17 H -0.26 -3.74 7.11 56.52 0.40 -3.34 15 18 H -0.26 -3.82 7.11 56.52 0.40 -3.42 15 19 H -0.25 -3.61 7.11 56.52 0.40 -3.21 15 20 H 0.05 0.80 8.14 -51.93 -0.42 0.37 15 21 H 0.05 0.84 6.50 -51.93 -0.34 0.51 15 22 H 0.06 1.08 6.80 -51.93 -0.35 0.72 15 23 H 0.07 1.38 8.08 -51.93 -0.42 0.96 15 24 H 0.06 0.96 6.17 -51.93 -0.32 0.64 15 25 H 0.08 1.79 6.04 -51.93 -0.31 1.47 15 26 H 0.12 2.68 7.59 -52.48 -0.40 2.28 15 27 H 0.13 2.88 6.24 -52.49 -0.33 2.56 15 28 H 0.31 5.21 8.27 -40.82 -0.34 4.87 15 LS Contribution 245.66 15.07 3.70 3.70 Total: -1.00 -26.80 245.66 -6.93 -33.73 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -2.39 Total: 6.00 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -2.88 Total: -22.41 kcal Atomic # 7 Polarization: -12.82 SS G_CDS: 0.79 Total: -12.02 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -1.11 Total: -17.52 kcal Atomic # 14 Polarization: 13.57 SS G_CDS: -5.04 Total: 8.52 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -26.80 -6.93 -33.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306814361.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.360 kcal (2) G-P(sol) polarization free energy of solvation -26.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds