Wall clock time and date at job start Mon Mar 30 2020 03:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36520 * 120.15582 * 2 1 4 4 C 1.50698 * 119.85206 * 0.02562 * 3 2 1 5 5 C 1.38776 * 120.29751 * 180.27399 * 3 2 1 6 6 N 1.48012 * 119.70268 * 179.75749 * 5 3 2 7 7 O 1.31698 * 120.00534 * 170.35739 * 6 5 3 8 8 O 1.31707 * 119.99618 * 350.35214 * 6 5 3 9 9 C 1.38821 * 120.60045 * 359.74176 * 5 3 2 10 10 C 1.36488 * 120.29808 * 0.02562 * 9 5 3 11 11 C 1.41266 * 120.15020 * 179.77982 * 2 1 3 12 12 C 1.40340 * 120.28945 * 0.02562 * 11 2 1 13 13 H 1.08002 * 120.00276 * 334.06769 * 12 11 2 14 14 C 1.46542 * 120.00083 * 154.34599 * 12 11 2 15 15 N 1.29513 * 119.99710 * 342.91622 * 14 12 11 16 16 Si 1.86796 * 120.00463 * 162.91148 * 14 12 11 17 17 H 1.48500 * 109.46833 * 94.93241 * 16 14 12 18 18 H 1.48498 * 109.47433 * 214.92909 * 16 14 12 19 19 H 1.48504 * 109.47070 * 334.93533 * 16 14 12 20 20 H 1.09005 * 109.47038 * 270.22283 * 1 2 3 21 21 H 1.09003 * 109.46743 * 30.21976 * 1 2 3 22 22 H 1.08992 * 109.47034 * 150.21913 * 1 2 3 23 23 H 1.09001 * 109.46779 * 261.07097 * 4 3 2 24 24 H 1.09000 * 109.47023 * 21.07328 * 4 3 2 25 25 H 1.09000 * 109.46928 * 141.07362 * 4 3 2 26 26 H 1.08004 * 119.85342 * 179.97438 * 9 5 3 27 27 H 1.07994 * 120.15817 * 179.97438 * 10 9 5 28 28 H 0.97001 * 119.99690 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1804 0.0000 4 6 1.4395 2.4856 0.0006 5 6 3.5806 1.1839 -0.0057 6 7 4.3108 2.4713 -0.0111 7 8 5.6145 2.4898 0.1745 8 8 3.6567 3.5985 -0.2016 9 6 4.2902 -0.0093 -0.0061 10 6 3.6294 -1.2035 -0.0014 11 6 2.2166 -1.2215 0.0047 12 6 1.5242 -2.4423 0.0088 13 1 0.5260 -2.4956 0.4177 14 6 2.1580 -3.6460 -0.5360 15 7 3.1926 -3.5401 -1.3079 16 14 1.4739 -5.3329 -0.1172 17 1 0.5408 -5.7682 -1.1872 18 1 2.5899 -6.3064 -0.0076 19 1 0.7471 -5.2652 1.1761 20 1 -0.3633 0.0040 1.0277 21 1 -0.3633 0.8880 -0.5173 22 1 -0.3633 -0.8919 -0.5104 23 1 1.3957 2.8802 -1.0145 24 1 0.4275 2.3208 0.3705 25 1 1.9506 3.1998 0.6463 26 1 5.3701 0.0075 -0.0111 27 1 4.1837 -2.1303 -0.0022 28 1 3.6119 -4.3369 -1.6688 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306814361.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:21 Heat of formation + Delta-G solvation = -0.694184 kcal Electronic energy + Delta-G solvation = -14674.321568 eV Core-core repulsion = 12078.823600 eV Total energy + Delta-G solvation = -2595.497968 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.67306 -38.62989 -36.29938 -34.92490 -33.92690 -33.13729 -29.03488 -28.84592 -26.94314 -25.35971 -22.53895 -21.54292 -19.58330 -18.40324 -18.32375 -17.48811 -16.52721 -16.13535 -15.75183 -14.72848 -14.66285 -14.17665 -13.91809 -13.75474 -13.50467 -13.26504 -13.11025 -12.91931 -12.53254 -12.23317 -11.91265 -11.64324 -11.51545 -11.39716 -11.34928 -10.92727 -9.97911 -9.63694 -9.31305 -6.90850 -1.12110 0.71858 0.87733 1.19512 1.35768 1.49571 1.61583 2.03630 2.23301 3.11705 3.96834 4.02046 4.33538 4.45755 4.50053 4.57854 4.70290 4.81451 4.99993 5.01124 5.10216 5.15352 5.20475 5.34907 5.51761 5.55659 5.73407 5.82734 6.01065 6.13831 6.44538 6.65938 7.52604 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.041609 B = 0.008572 C = 0.007280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.765806 B = 3265.810241 C = 3845.156668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.170 4.170 3 C -0.024 4.024 4 C -0.108 4.108 5 C -0.124 4.124 6 N 0.043 4.957 7 O -0.420 6.420 8 O -0.362 6.362 9 C -0.078 4.078 10 C -0.144 4.144 11 C 0.053 3.947 12 C -0.291 4.291 13 H 0.144 0.856 14 C 0.017 3.983 15 N -0.714 5.714 16 Si 1.010 2.990 17 H -0.249 1.249 18 H -0.262 1.262 19 H -0.238 1.238 20 H 0.075 0.925 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.064 0.936 24 H 0.092 0.908 25 H 0.062 0.938 26 H 0.107 0.893 27 H 0.136 0.864 28 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.195 -11.962 1.019 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.174 4.174 3 C -0.025 4.025 4 C -0.164 4.164 5 C -0.234 4.234 6 N 0.438 4.562 7 O -0.549 6.549 8 O -0.504 6.504 9 C -0.098 4.098 10 C -0.166 4.166 11 C 0.048 3.952 12 C -0.314 4.314 13 H 0.161 0.839 14 C -0.215 4.215 15 N -0.333 5.333 16 Si 0.825 3.175 17 H -0.173 1.173 18 H -0.186 1.186 19 H -0.161 1.161 20 H 0.094 0.906 21 H 0.086 0.914 22 H 0.098 0.902 23 H 0.083 0.917 24 H 0.111 0.889 25 H 0.080 0.920 26 H 0.125 0.875 27 H 0.153 0.847 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.899 -11.984 0.858 15.568 hybrid contribution 1.146 0.323 -0.166 1.202 sum -8.753 -11.661 0.692 14.597 Atomic orbital electron populations 1.20628 0.88355 1.03157 1.02575 1.19847 0.97398 0.89900 1.10225 1.19153 0.89492 0.97569 0.96321 1.21050 0.99874 0.92961 1.02503 1.20138 0.91880 0.79918 1.31424 1.50002 1.01649 1.04134 1.00399 1.96019 0.93434 1.96338 1.69146 1.95942 1.67605 1.21394 1.65415 1.20226 0.99183 0.91038 0.99394 1.21212 0.94793 0.95446 1.05149 1.18155 0.92063 0.93581 0.91378 1.22605 1.01808 0.90207 1.16815 0.83886 1.29034 0.93666 1.06904 0.91921 1.69090 1.12980 1.38065 1.13165 0.84715 0.79555 0.71783 0.81411 1.17308 1.18634 1.16087 0.90622 0.91354 0.90188 0.91693 0.88903 0.91979 0.87534 0.84659 0.85963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.62 8.56 71.24 0.61 -2.01 15 2 C -0.17 -6.75 5.92 -19.52 -0.12 -6.87 15 3 C -0.02 -1.08 5.84 -20.14 -0.12 -1.20 15 4 C -0.11 -4.37 7.89 71.24 0.56 -3.81 15 5 C -0.12 -6.57 6.87 36.65 0.25 -6.32 15 6 N 0.04 2.59 4.98 -45.83 -0.23 2.37 15 7 O -0.42 -26.60 19.17 3.52 0.07 -26.53 15 8 O -0.36 -21.44 15.98 3.50 0.06 -21.38 15 9 C -0.08 -3.92 9.51 22.00 0.21 -3.71 15 10 C -0.14 -6.40 8.72 22.61 0.20 -6.20 15 11 C 0.05 2.14 5.60 -21.27 -0.12 2.02 15 12 C -0.29 -9.71 8.40 24.95 0.21 -9.50 15 13 H 0.14 3.89 6.97 -2.91 -0.02 3.87 15 14 C 0.02 0.53 5.31 87.20 0.46 1.00 15 15 N -0.71 -24.35 11.12 23.21 0.26 -24.09 15 16 Si 1.01 21.04 29.67 68.60 2.04 23.08 15 17 H -0.25 -5.02 7.11 99.48 0.71 -4.31 15 18 H -0.26 -5.51 7.11 99.48 0.71 -4.80 15 19 H -0.24 -4.74 7.11 99.48 0.71 -4.04 15 20 H 0.08 1.89 8.14 -2.38 -0.02 1.87 15 21 H 0.07 1.82 6.50 -2.39 -0.02 1.81 15 22 H 0.08 2.06 6.80 -2.39 -0.02 2.04 15 23 H 0.06 2.64 8.08 -2.39 -0.02 2.62 15 24 H 0.09 2.95 6.17 -2.39 -0.01 2.94 15 25 H 0.06 2.82 6.04 -2.39 -0.01 2.81 15 26 H 0.11 5.38 7.59 -2.91 -0.02 5.35 15 27 H 0.14 5.70 6.24 -2.91 -0.02 5.68 15 28 H 0.33 9.32 8.27 -92.71 -0.77 8.55 15 Total: -1.00 -64.30 245.66 5.53 -58.76 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 1.19 Total: 24.40 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 2.15 Total: -36.60 kcal Atomic # 7 Polarization: -21.75 SS G_CDS: 0.03 Total: -21.72 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: 0.12 Total: -47.91 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: 2.04 Total: 23.08 kcal Total: -64.30 5.53 -58.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306814361.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.069 kcal (2) G-P(sol) polarization free energy of solvation -64.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds