Wall clock time and date at job start Mon Mar 30 2020 03:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00164 * 2 1 4 4 H 1.48495 * 109.46807 * 270.00112 * 3 2 1 5 5 H 1.48503 * 109.46679 * 30.00089 * 3 2 1 6 6 H 1.48491 * 109.47133 * 149.99848 * 3 2 1 7 7 C 1.37884 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99897 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99832 * 179.97438 * 7 2 1 10 10 C 1.50700 * 109.46932 * 180.02562 * 9 7 2 11 11 C 1.37990 * 119.96570 * 265.23551 * 10 9 7 12 12 C 1.38592 * 120.43176 * 180.28105 * 11 10 9 13 13 C 1.37759 * 120.36499 * 359.73973 * 12 11 10 14 14 C 1.39758 * 119.91791 * 0.02562 * 13 12 11 15 15 C 1.47291 * 120.21388 * 179.97438 * 14 13 12 16 16 O 1.21524 * 120.00421 * 185.92598 * 15 14 13 17 17 O 1.34769 * 120.00075 * 5.92818 * 15 14 13 18 18 C 1.38926 * 119.96517 * 85.00098 * 10 9 7 19 19 N 1.38830 * 120.17629 * 0.02562 * 18 10 9 20 20 H 0.96996 * 119.99943 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.47135 * 60.00311 * 9 7 2 22 22 H 1.08996 * 109.47195 * 300.00230 * 9 7 2 23 23 H 1.08003 * 119.78714 * 0.02562 * 11 10 9 24 24 H 1.08007 * 119.81575 * 179.72065 * 12 11 10 25 25 H 1.07996 * 120.03914 * 180.02562 * 13 12 11 26 26 H 0.96697 * 116.99955 * 179.97438 * 17 15 14 27 27 H 0.97001 * 119.99779 * 174.04125 * 19 18 10 28 28 H 0.97007 * 120.00492 * 353.75784 * 19 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0138 -2.6149 -0.0023 11 6 4.3377 -3.2324 1.1885 12 6 4.8060 -4.5368 1.1982 13 6 4.9487 -5.2342 0.0188 14 6 4.6205 -4.6250 -1.1954 15 6 4.7712 -5.3644 -2.4603 16 8 4.5884 -4.7989 -3.5203 17 8 5.1116 -6.6683 -2.4422 18 6 4.1458 -3.3033 -1.2018 19 7 3.8165 -2.6856 -2.4007 20 1 -0.4850 0.8400 -0.0004 21 1 3.8752 -0.6805 0.8888 22 1 3.8745 -0.6800 -0.8911 23 1 4.2293 -2.6944 2.1187 24 1 5.0608 -5.0089 2.1356 25 1 5.3137 -6.2505 0.0325 26 1 5.1982 -7.1113 -3.2973 27 1 3.9905 -3.1359 -3.2420 28 1 3.4088 -1.8054 -2.3970 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306913595.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:21 Heat of formation + Delta-G solvation = -94.088093 kcal Electronic energy + Delta-G solvation = -14545.149797 eV Core-core repulsion = 11945.601965 eV Total energy + Delta-G solvation = -2599.547832 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.53982 -39.81208 -37.18888 -35.62898 -34.95831 -33.29878 -30.50921 -28.93236 -25.40177 -24.83451 -22.15711 -21.82656 -18.94541 -18.88820 -18.14345 -17.69148 -17.59069 -16.60143 -16.30278 -15.34906 -14.99679 -14.91796 -14.45650 -14.19256 -13.77842 -13.61171 -12.94722 -12.80868 -12.57342 -12.34455 -11.91738 -11.77180 -11.55650 -11.53789 -11.29526 -10.77039 -9.68675 -8.38045 -8.26750 -6.32415 -0.06072 0.80211 1.37757 1.39945 1.51281 1.63442 2.18918 2.36277 2.99165 3.06560 3.13893 3.97464 4.18488 4.30507 4.54948 4.59583 4.82351 5.00982 5.10037 5.20479 5.34558 5.58137 5.59899 5.60380 5.85702 6.05318 6.29416 6.58030 6.74726 6.97362 7.11917 7.31333 8.88938 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.038420 B = 0.008142 C = 0.007366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.604626 B = 3438.118740 C = 3800.196846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.010 3.990 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.244 1.244 7 C -0.513 4.513 8 H 0.026 0.974 9 C 0.031 3.969 10 C -0.162 4.162 11 C -0.045 4.045 12 C -0.191 4.191 13 C -0.024 4.024 14 C -0.251 4.251 15 C 0.544 3.456 16 O -0.561 6.561 17 O -0.499 6.499 18 C 0.271 3.729 19 N -0.852 5.852 20 H 0.266 0.734 21 H 0.037 0.963 22 H 0.024 0.976 23 H 0.133 0.867 24 H 0.156 0.844 25 H 0.159 0.841 26 H 0.430 0.570 27 H 0.409 0.591 28 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.834 -9.626 -1.035 16.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.187 4.187 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.167 1.167 7 C -0.551 4.551 8 H 0.044 0.956 9 C -0.006 4.006 10 C -0.167 4.167 11 C -0.064 4.064 12 C -0.210 4.210 13 C -0.043 4.043 14 C -0.258 4.258 15 C 0.393 3.607 16 O -0.455 6.455 17 O -0.312 6.312 18 C 0.158 3.842 19 N -0.397 5.397 20 H 0.075 0.925 21 H 0.055 0.945 22 H 0.042 0.958 23 H 0.151 0.849 24 H 0.174 0.826 25 H 0.176 0.824 26 H 0.292 0.708 27 H 0.249 0.751 28 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 12.624 -9.237 -1.005 15.674 hybrid contribution -0.527 0.835 -1.022 1.421 sum 12.097 -8.401 -2.027 14.867 Atomic orbital electron populations 1.70062 1.08358 1.28127 1.52396 1.25945 0.95472 1.03176 0.94121 0.85701 0.79591 0.78386 0.79253 1.19182 1.21249 1.16738 1.21147 0.90777 0.92678 1.50491 0.95606 1.18442 0.94096 0.90526 0.97537 1.19730 1.06330 0.98363 0.92230 1.21339 0.92844 0.95333 0.96888 1.21130 1.06236 0.94526 0.99157 1.21345 0.93261 0.99745 0.89900 1.18556 1.20737 0.93613 0.92847 1.20680 0.71229 0.80416 0.88331 1.90511 1.51478 1.69321 1.34208 1.84523 1.81285 1.22979 1.42382 1.17831 0.89077 0.89854 0.87427 1.43449 1.66920 1.22647 1.06702 0.92499 0.94520 0.95752 0.84907 0.82593 0.82368 0.70820 0.75070 0.77055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.69 13.96 21.45 0.30 -58.39 15 2 C 0.01 0.57 5.47 84.66 0.46 1.03 15 3 Si 0.95 42.83 27.47 68.60 1.88 44.72 15 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 15 6 H -0.24 -10.15 6.54 99.48 0.65 -9.49 15 7 C -0.51 -28.80 9.58 25.60 0.25 -28.55 15 8 H 0.03 1.65 7.98 -2.91 -0.02 1.62 15 9 C 0.03 1.44 3.57 29.10 0.10 1.54 15 10 C -0.16 -6.65 5.08 -19.76 -0.10 -6.75 15 11 C -0.04 -1.55 9.66 22.30 0.22 -1.33 15 12 C -0.19 -5.27 10.02 22.24 0.22 -5.05 15 13 C -0.02 -0.67 9.61 22.52 0.22 -0.45 15 14 C -0.25 -8.42 5.89 -19.99 -0.12 -8.54 15 15 C 0.54 16.45 8.25 70.20 0.58 17.03 15 16 O -0.56 -19.29 14.44 19.76 0.29 -19.00 15 17 O -0.50 -10.32 12.70 -56.80 -0.72 -11.05 15 18 C 0.27 10.68 6.74 38.74 0.26 10.94 15 19 N -0.85 -33.34 8.80 -50.93 -0.45 -33.79 15 20 H 0.27 15.38 8.31 -92.71 -0.77 14.61 15 21 H 0.04 1.62 7.11 -2.39 -0.02 1.61 15 22 H 0.02 1.08 6.34 -2.39 -0.02 1.07 15 23 H 0.13 4.20 8.06 -2.91 -0.02 4.18 15 24 H 0.16 3.12 8.06 -2.91 -0.02 3.10 15 25 H 0.16 3.29 7.62 -2.91 -0.02 3.27 15 26 H 0.43 4.59 9.11 -74.06 -0.67 3.92 15 27 H 0.41 15.24 5.35 -94.49 -0.51 14.73 15 28 H 0.40 16.28 6.96 -92.70 -0.65 15.63 15 Total: -1.00 -69.20 246.88 2.73 -66.47 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: -0.66 Total: 31.18 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: 2.09 Total: -20.13 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -0.15 Total: -92.19 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.44 Total: -30.05 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.88 Total: 44.72 kcal Total: -69.20 2.73 -66.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306913595.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.622 kcal (2) G-P(sol) polarization free energy of solvation -69.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds