Wall clock time and date at job start Mon Mar 30 2020 03:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00307 * 2 1 4 4 H 1.48503 * 109.47273 * 240.00517 * 3 2 1 5 5 H 1.48503 * 109.46846 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46927 * 120.00162 * 3 2 1 7 7 C 1.37883 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99609 * 179.97438 * 7 2 1 9 9 C 1.50691 * 119.99937 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.47001 * 180.02562 * 9 7 2 11 11 C 1.38254 * 119.88353 * 265.00167 * 10 9 7 12 12 C 1.37966 * 120.23002 * 180.30097 * 11 10 9 13 13 C 1.39664 * 120.00306 * 359.44399 * 12 11 10 14 14 C 1.47748 * 120.11756 * 180.30125 * 13 12 11 15 15 O 1.21463 * 119.99965 * 180.25177 * 14 13 12 16 16 O 1.34710 * 119.99974 * 0.24923 * 14 13 12 17 17 C 1.39515 * 119.76798 * 0.55491 * 13 12 11 18 18 C 1.38665 * 119.76604 * 359.71900 * 17 13 12 19 19 N 1.39712 * 119.99966 * 180.02562 * 18 17 13 20 20 H 0.97004 * 119.99864 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47478 * 60.00420 * 9 7 2 22 22 H 1.08998 * 109.47512 * 300.00243 * 9 7 2 23 23 H 1.08002 * 119.88163 * 0.02562 * 11 10 9 24 24 H 1.08001 * 120.00116 * 179.70490 * 12 11 10 25 25 H 0.96695 * 117.00057 * 180.02562 * 16 14 13 26 26 H 1.07997 * 120.11297 * 179.75088 * 17 13 12 27 27 H 0.96996 * 119.99964 * 179.97438 * 19 18 17 28 28 H 0.97004 * 120.00013 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 6 2.5984 -4.2361 -1.1947 12 6 3.4896 -5.2893 -1.2025 13 6 4.0321 -5.7540 -0.0023 14 6 4.9918 -6.8773 -0.0083 15 8 5.4587 -7.2828 1.0371 16 8 5.3488 -7.4519 -1.1732 17 6 3.6605 -5.1572 1.2028 18 6 2.7597 -4.1030 1.2000 19 7 2.3846 -3.5015 2.4039 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 2.1836 -3.8753 -2.1243 24 1 3.7710 -5.7517 -2.1370 25 1 5.9792 -8.1837 -1.1267 26 1 4.0735 -5.5148 2.1344 27 1 1.7548 -2.7638 2.4019 28 1 2.7541 -3.8215 3.2418 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307020729.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:23 Heat of formation + Delta-G solvation = -80.441890 kcal Electronic energy + Delta-G solvation = -14240.908868 eV Core-core repulsion = 11641.952780 eV Total energy + Delta-G solvation = -2598.956088 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.09964 -38.60400 -35.90736 -34.10808 -33.28885 -31.34790 -28.42850 -27.49222 -24.36263 -22.19664 -21.66340 -20.13537 -17.89284 -17.18866 -16.39561 -16.21179 -15.39330 -15.07578 -14.85560 -14.14551 -13.43474 -13.16326 -12.90635 -12.86701 -12.12111 -11.58577 -11.46298 -11.32545 -10.92926 -10.72150 -10.44030 -10.37493 -10.12933 -9.67116 -9.53898 -8.50881 -8.19065 -6.89682 -6.12003 -4.17706 1.23122 2.12445 2.98333 3.23669 3.26840 3.31622 3.35198 4.32121 4.48287 4.58954 5.21088 5.32191 5.47741 5.67280 5.82087 6.04969 6.33589 6.45088 6.57218 6.78633 6.82536 7.01589 7.30016 7.47096 7.63152 7.82603 8.07827 8.11733 8.21709 8.45172 8.87913 9.47204 10.96136 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.045104 B = 0.006586 C = 0.006410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.636632 B = 4250.322450 C = 4367.004016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.051 3.949 10 C -0.069 4.069 11 C -0.100 4.100 12 C -0.117 4.117 13 C -0.117 4.117 14 C 0.532 3.468 15 O -0.529 6.529 16 O -0.514 6.514 17 C -0.144 4.144 18 C 0.204 3.796 19 N -0.871 5.871 20 H 0.263 0.737 21 H 0.032 0.968 22 H 0.028 0.972 23 H 0.126 0.874 24 H 0.124 0.876 25 H 0.407 0.593 26 H 0.124 0.876 27 H 0.411 0.589 28 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.744 -9.671 -0.210 11.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.014 3.986 10 C -0.073 4.073 11 C -0.119 4.119 12 C -0.137 4.137 13 C -0.119 4.119 14 C 0.378 3.622 15 O -0.420 6.420 16 O -0.325 6.325 17 C -0.167 4.167 18 C 0.099 3.901 19 N -0.411 5.411 20 H 0.073 0.927 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.144 0.856 24 H 0.142 0.858 25 H 0.264 0.736 26 H 0.142 0.858 27 H 0.243 0.757 28 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 5.416 -9.323 0.018 10.782 hybrid contribution 0.855 0.630 0.355 1.120 sum 6.271 -8.693 0.373 10.725 Atomic orbital electron populations 1.69939 1.06000 1.27066 1.50130 1.25005 0.94863 0.99237 0.95072 0.86595 0.79523 0.82771 0.78791 1.20123 1.21272 1.20223 1.21004 0.93038 0.89644 1.51451 0.92469 1.18268 0.92414 0.89424 0.98463 1.20557 0.98749 0.97276 0.90733 1.20850 0.97723 0.95357 0.97931 1.21078 0.98273 0.97841 0.96531 1.18451 1.01072 0.97437 0.94897 1.21160 0.79229 0.81408 0.80410 1.90825 1.54369 1.63304 1.33453 1.84608 1.61763 1.50161 1.35927 1.20422 1.01064 0.98177 0.97078 1.17445 0.93476 0.91763 0.87419 1.42538 1.53140 1.40863 1.04566 0.92695 0.94939 0.95398 0.85565 0.85763 0.73599 0.85780 0.75679 0.78473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.06 13.29 55.43 0.74 -24.32 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 15 3 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 15 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 7 C -0.51 -13.50 9.09 -34.44 -0.31 -13.81 15 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 15 9 C 0.05 1.23 4.53 -29.04 -0.13 1.10 15 10 C -0.07 -1.42 5.09 -104.34 -0.53 -1.96 15 11 C -0.10 -1.85 9.65 -39.68 -0.38 -2.24 15 12 C -0.12 -1.95 9.61 -39.15 -0.38 -2.32 15 13 C -0.12 -2.00 5.87 -105.00 -0.62 -2.62 15 14 C 0.53 8.35 8.27 34.62 0.29 8.63 15 15 O -0.53 -9.40 17.13 -19.24 -0.33 -9.73 15 16 O -0.51 -6.14 12.68 -40.52 -0.51 -6.66 15 17 C -0.14 -2.54 9.44 -38.95 -0.37 -2.91 15 18 C 0.20 3.86 6.73 -83.83 -0.56 3.30 15 19 N -0.87 -14.77 8.99 32.39 0.29 -14.47 15 20 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 21 H 0.03 0.82 8.05 -51.93 -0.42 0.41 15 22 H 0.03 0.69 6.80 -51.93 -0.35 0.33 15 23 H 0.13 2.21 8.06 -52.49 -0.42 1.78 15 24 H 0.12 1.78 7.61 -52.49 -0.40 1.38 15 25 H 0.41 2.79 9.11 45.56 0.42 3.20 15 26 H 0.12 2.06 7.65 -52.49 -0.40 1.66 15 27 H 0.41 7.54 6.92 -40.82 -0.28 7.26 15 28 H 0.39 5.34 8.84 -40.82 -0.36 4.98 15 LS Contribution 255.76 15.07 3.85 3.85 Total: -1.00 -30.34 255.76 -5.84 -36.18 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -1.76 Total: 10.67 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -3.09 Total: -11.31 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 1.03 Total: -38.80 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.84 Total: -16.39 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.34 -5.84 -36.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307020729.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.261 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds