Wall clock time and date at job start Mon Mar 30 2020 03:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00307 * 2 1 4 4 H 1.48503 * 109.47273 * 240.00517 * 3 2 1 5 5 H 1.48503 * 109.46846 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46927 * 120.00162 * 3 2 1 7 7 C 1.37883 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99609 * 179.97438 * 7 2 1 9 9 C 1.50691 * 119.99937 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.47001 * 180.02562 * 9 7 2 11 11 C 1.38254 * 119.88353 * 265.00167 * 10 9 7 12 12 C 1.37966 * 120.23002 * 180.30097 * 11 10 9 13 13 C 1.39664 * 120.00306 * 359.44399 * 12 11 10 14 14 C 1.47748 * 120.11756 * 180.30125 * 13 12 11 15 15 O 1.21463 * 119.99965 * 180.25177 * 14 13 12 16 16 O 1.34710 * 119.99974 * 0.24923 * 14 13 12 17 17 C 1.39515 * 119.76798 * 0.55491 * 13 12 11 18 18 C 1.38665 * 119.76604 * 359.71900 * 17 13 12 19 19 N 1.39712 * 119.99966 * 180.02562 * 18 17 13 20 20 H 0.97004 * 119.99864 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47478 * 60.00420 * 9 7 2 22 22 H 1.08998 * 109.47512 * 300.00243 * 9 7 2 23 23 H 1.08002 * 119.88163 * 0.02562 * 11 10 9 24 24 H 1.08001 * 120.00116 * 179.70490 * 12 11 10 25 25 H 0.96695 * 117.00057 * 180.02562 * 16 14 13 26 26 H 1.07997 * 120.11297 * 179.75088 * 17 13 12 27 27 H 0.96996 * 119.99964 * 179.97438 * 19 18 17 28 28 H 0.97004 * 120.00013 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 6 2.5984 -4.2361 -1.1947 12 6 3.4896 -5.2893 -1.2025 13 6 4.0321 -5.7540 -0.0023 14 6 4.9918 -6.8773 -0.0083 15 8 5.4587 -7.2828 1.0371 16 8 5.3488 -7.4519 -1.1732 17 6 3.6605 -5.1572 1.2028 18 6 2.7597 -4.1030 1.2000 19 7 2.3846 -3.5015 2.4039 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 2.1836 -3.8753 -2.1243 24 1 3.7710 -5.7517 -2.1370 25 1 5.9792 -8.1837 -1.1267 26 1 4.0735 -5.5148 2.1344 27 1 1.7548 -2.7638 2.4019 28 1 2.7541 -3.8215 3.2418 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307020729.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:23 Heat of formation + Delta-G solvation = -101.074167 kcal Electronic energy + Delta-G solvation = -14241.803551 eV Core-core repulsion = 11641.952780 eV Total energy + Delta-G solvation = -2599.850770 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.34660 -39.98444 -37.03106 -35.65363 -35.04925 -33.03420 -29.94484 -29.10181 -26.06412 -23.75922 -23.06498 -21.54287 -19.09631 -18.51038 -18.39024 -17.60830 -16.76562 -16.57499 -16.30225 -15.71140 -14.85150 -14.59836 -14.50670 -14.23954 -13.79901 -13.38052 -13.13361 -12.64744 -12.54718 -12.46647 -12.02615 -11.78843 -11.55330 -11.49628 -11.34402 -10.56784 -9.68959 -8.38115 -8.10751 -6.29037 -0.14141 0.72197 1.42711 1.43419 1.51497 1.68041 2.12231 2.42012 3.02280 3.14066 3.22691 3.99755 4.18849 4.30767 4.40232 4.61867 4.92182 5.05581 5.19138 5.38082 5.40158 5.48630 5.64111 5.76968 5.90681 5.96466 6.20604 6.68943 6.82411 7.04542 7.13048 7.39448 8.90906 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.045104 B = 0.006586 C = 0.006410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.636632 B = 4250.322450 C = 4367.004016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.520 4.520 8 H 0.050 0.950 9 C 0.063 3.937 10 C -0.103 4.103 11 C -0.103 4.103 12 C -0.108 4.108 13 C -0.118 4.118 14 C 0.542 3.458 15 O -0.551 6.551 16 O -0.500 6.500 17 C -0.145 4.145 18 C 0.198 3.802 19 N -0.867 5.867 20 H 0.265 0.735 21 H 0.008 0.992 22 H 0.013 0.987 23 H 0.131 0.869 24 H 0.153 0.847 25 H 0.432 0.568 26 H 0.135 0.865 27 H 0.404 0.596 28 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.380 -10.481 -0.585 12.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.783 3.217 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.558 4.558 8 H 0.069 0.931 9 C 0.026 3.974 10 C -0.107 4.107 11 C -0.121 4.121 12 C -0.128 4.128 13 C -0.120 4.120 14 C 0.388 3.612 15 O -0.444 6.444 16 O -0.314 6.314 17 C -0.169 4.169 18 C 0.092 3.908 19 N -0.407 5.407 20 H 0.073 0.927 21 H 0.026 0.974 22 H 0.031 0.969 23 H 0.149 0.851 24 H 0.171 0.829 25 H 0.294 0.706 26 H 0.153 0.847 27 H 0.234 0.766 28 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 7.083 -10.170 -0.358 12.398 hybrid contribution 0.392 0.758 0.428 0.955 sum 7.475 -9.411 0.070 12.019 Atomic orbital electron populations 1.70048 1.07378 1.27852 1.51257 1.25768 0.95593 1.02510 0.94818 0.85620 0.78326 0.78873 0.78926 1.19715 1.20931 1.19573 1.21243 0.92800 0.90945 1.50774 0.93137 1.17983 0.92600 0.90366 0.96474 1.20352 1.00036 0.97792 0.92545 1.20969 0.97989 0.95784 0.97385 1.21261 0.97097 0.96838 0.97604 1.18737 1.00843 0.97612 0.94789 1.20783 0.78596 0.80927 0.80865 1.90830 1.55115 1.63930 1.34521 1.84536 1.62212 1.50921 1.33701 1.20552 1.00590 0.97659 0.98050 1.17524 0.93702 0.92211 0.87319 1.42498 1.52831 1.40426 1.04943 0.92652 0.97413 0.96866 0.85145 0.82920 0.70625 0.84691 0.76583 0.76720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.85 13.29 21.45 0.28 -52.57 15 2 C 0.01 0.64 5.46 84.66 0.46 1.10 15 3 Si 0.96 42.70 29.54 68.60 2.03 44.72 15 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 15 5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 15 6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 15 7 C -0.52 -27.73 9.09 25.60 0.23 -27.49 15 8 H 0.05 2.71 7.74 -2.91 -0.02 2.69 15 9 C 0.06 3.10 4.53 29.10 0.13 3.24 15 10 C -0.10 -4.28 5.09 -19.68 -0.10 -4.38 15 11 C -0.10 -3.73 9.65 22.21 0.21 -3.52 15 12 C -0.11 -3.34 9.61 22.55 0.22 -3.12 15 13 C -0.12 -3.77 5.87 -20.11 -0.12 -3.88 15 14 C 0.54 15.33 8.27 70.34 0.58 15.91 15 15 O -0.55 -18.15 17.13 19.95 0.34 -17.80 15 16 O -0.50 -9.94 12.68 -56.19 -0.71 -10.66 15 17 C -0.14 -4.91 9.44 22.68 0.21 -4.69 15 18 C 0.20 7.42 6.73 38.17 0.26 7.68 15 19 N -0.87 -29.29 8.99 -51.45 -0.46 -29.75 15 20 H 0.26 14.34 8.31 -92.71 -0.77 13.57 15 21 H 0.01 0.40 8.05 -2.38 -0.02 0.38 15 22 H 0.01 0.68 6.80 -2.39 -0.02 0.66 15 23 H 0.13 4.52 8.06 -2.91 -0.02 4.49 15 24 H 0.15 3.81 7.61 -2.91 -0.02 3.79 15 25 H 0.43 4.07 9.11 -74.06 -0.67 3.40 15 26 H 0.14 4.23 7.65 -2.91 -0.02 4.21 15 27 H 0.40 15.09 6.92 -92.71 -0.64 14.45 15 28 H 0.40 10.80 8.84 -92.71 -0.82 9.98 15 Total: -1.00 -64.15 255.76 2.66 -61.49 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: -0.91 Total: 23.72 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 2.09 Total: -19.16 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -0.18 Total: -82.32 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.37 Total: -28.46 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -64.15 2.66 -61.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307020729.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.584 kcal (2) G-P(sol) polarization free energy of solvation -64.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds