Wall clock time and date at job start Mon Mar 30 2020 02:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39663 * 120.16092 * 216.37135 * 3 2 1 5 5 C 1.37896 * 119.85939 * 179.97438 * 4 3 2 6 6 C 1.38410 * 120.18754 * 0.02562 * 5 4 3 7 7 C 1.38285 * 120.32461 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.92873 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46869 * 264.99712 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 C 1.38125 * 120.13731 * 0.23474 * 7 6 5 18 18 Cl 1.73602 * 120.09339 * 179.74763 * 17 7 6 19 19 H 1.08002 * 120.06696 * 359.97438 * 4 3 2 20 20 H 1.08004 * 119.90633 * 179.97438 * 5 4 3 21 21 H 1.08000 * 119.83708 * 180.02562 * 6 5 4 22 22 H 1.09004 * 109.47210 * 145.00005 * 8 7 6 23 23 H 1.08994 * 109.47551 * 24.99657 * 8 7 6 24 24 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2693 0.9733 0.7161 5 6 4.6483 0.9677 0.7122 6 6 5.3384 0.0018 0.0006 7 6 4.6518 -0.9642 -0.7120 8 6 5.4122 -2.0114 -1.4842 9 6 5.5588 -1.5706 -2.9178 10 1 5.1433 -0.6264 -3.2377 11 6 6.2288 -2.3698 -3.8197 12 7 6.7351 -3.5194 -3.4301 13 14 6.4172 -1.8199 -5.5949 14 1 7.6691 -1.0344 -5.7396 15 1 6.4758 -3.0117 -6.4788 16 1 5.2566 -0.9763 -5.9777 17 6 3.2706 -0.9681 -0.7218 18 17 2.4098 -2.1774 -1.6220 19 1 2.7327 1.7281 1.2717 20 1 5.1913 1.7198 1.2654 21 1 6.4184 0.0025 0.0018 22 1 4.8686 -2.9556 -1.4482 23 1 6.3995 -2.1435 -1.0419 24 1 7.2061 -4.0819 -4.0647 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307039370.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:21 Heat of formation + Delta-G solvation = 18.593784 kcal Electronic energy + Delta-G solvation = -11923.212568 eV Core-core repulsion = 9633.427059 eV Total energy + Delta-G solvation = -2289.785509 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.030 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.50872 -37.61957 -37.33752 -35.41952 -33.20778 -31.95944 -28.99332 -25.34539 -24.79047 -22.48766 -19.33700 -18.42329 -17.43402 -16.86662 -16.50816 -15.37679 -15.30318 -14.55268 -14.42885 -14.13539 -14.04855 -13.56341 -13.26077 -12.98042 -12.73728 -12.45697 -12.38584 -12.27240 -11.93015 -11.50391 -11.30554 -10.51914 -9.78354 -9.51786 -8.13956 -6.22948 -0.27261 0.36662 1.22531 1.42459 1.44548 1.53775 1.54605 1.92925 2.44686 2.79736 2.87370 3.19927 3.90651 4.14943 4.38880 4.42233 4.57047 4.95796 5.14793 5.29032 5.43432 5.46379 5.80992 5.82973 5.87327 6.22485 6.36000 6.87860 7.44045 8.95949 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.033169 B = 0.009217 C = 0.008150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.964070 B = 3036.998646 C = 3434.851912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.278 3.722 3 C -0.041 4.041 4 C -0.063 4.063 5 C -0.097 4.097 6 C -0.082 4.082 7 C -0.060 4.060 8 C 0.053 3.947 9 C -0.511 4.511 10 H 0.054 0.946 11 C 0.010 3.990 12 N -0.927 5.927 13 Si 0.951 3.049 14 H -0.269 1.269 15 H -0.287 1.287 16 H -0.270 1.270 17 C -0.013 4.013 18 Cl -0.075 7.075 19 H 0.174 0.826 20 H 0.182 0.818 21 H 0.146 0.854 22 H 0.015 0.985 23 H 0.018 0.982 24 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.291 9.322 8.326 12.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.037 4.037 3 C -0.045 4.045 4 C -0.083 4.083 5 C -0.115 4.115 6 C -0.101 4.101 7 C -0.061 4.061 8 C 0.016 3.984 9 C -0.549 4.549 10 H 0.072 0.928 11 C -0.188 4.188 12 N -0.568 5.568 13 Si 0.777 3.223 14 H -0.194 1.194 15 H -0.213 1.213 16 H -0.195 1.195 17 C -0.042 4.042 18 Cl -0.046 7.046 19 H 0.191 0.809 20 H 0.199 0.801 21 H 0.164 0.836 22 H 0.034 0.966 23 H 0.036 0.964 24 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.050 9.060 8.178 12.860 hybrid contribution 0.482 -0.612 -1.374 1.579 sum -3.568 8.448 6.804 11.419 Atomic orbital electron populations 1.81171 1.12633 1.09033 1.09629 1.25635 0.92594 0.92731 0.92701 1.15968 0.83868 0.99862 1.04845 1.21456 0.94716 0.95832 0.96274 1.21563 0.93251 0.98470 0.98182 1.21584 1.01602 0.92700 0.94176 1.20295 0.91169 0.98471 0.96151 1.18184 0.94267 0.92336 0.93625 1.21214 1.34559 1.04796 0.94312 0.92759 1.25719 0.95486 0.94970 1.02621 1.70057 1.38046 1.12289 1.36390 0.85652 0.78824 0.77778 0.80091 1.19443 1.21253 1.19487 1.20969 0.92491 0.92974 0.97749 1.98362 1.76382 1.55662 1.74192 0.80884 0.80104 0.83637 0.96648 0.96368 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -15.22 18.54 19.00 0.35 -14.87 14 2 C 0.28 8.65 14.39 88.33 1.27 9.92 14 3 C -0.04 -1.20 5.73 -21.32 -0.12 -1.32 14 4 C -0.06 -1.27 9.76 22.53 0.22 -1.05 14 5 C -0.10 -1.87 10.03 22.23 0.22 -1.65 14 6 C -0.08 -2.31 9.67 22.32 0.22 -2.09 14 7 C -0.06 -2.27 5.07 -19.88 -0.10 -2.37 14 8 C 0.05 2.55 4.60 29.10 0.13 2.68 14 9 C -0.51 -27.01 9.09 25.60 0.23 -26.78 14 10 H 0.05 2.84 7.74 -2.91 -0.02 2.82 14 11 C 0.01 0.56 5.46 84.66 0.46 1.02 14 12 N -0.93 -53.74 13.29 21.45 0.28 -53.45 14 13 Si 0.95 43.10 29.54 68.60 2.03 45.13 14 14 H -0.27 -11.65 7.11 99.48 0.71 -10.94 14 15 H -0.29 -12.94 7.11 99.48 0.71 -12.23 14 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 14 17 C -0.01 -0.46 6.34 22.61 0.14 -0.31 14 18 Cl -0.08 -3.04 26.47 -2.72 -0.07 -3.11 14 19 H 0.17 2.18 8.06 -2.91 -0.02 2.16 14 20 H 0.18 1.83 8.06 -2.91 -0.02 1.81 14 21 H 0.15 3.78 8.06 -2.91 -0.02 3.75 14 22 H 0.02 0.81 7.13 -2.38 -0.02 0.79 14 23 H 0.02 0.91 8.05 -2.39 -0.02 0.89 14 24 H 0.26 14.46 8.31 -92.70 -0.77 13.69 14 Total: -1.00 -63.32 244.70 6.49 -56.83 By element: Atomic # 1 Polarization: -9.80 SS G_CDS: 1.22 Total: -8.58 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 2.68 Total: -21.95 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: 0.64 Total: -68.32 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 17 Polarization: -3.04 SS G_CDS: -0.07 Total: -3.11 kcal Total: -63.32 6.49 -56.83 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307039370.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.422 kcal (2) G-P(sol) polarization free energy of solvation -63.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds