Wall clock time and date at job start Mon Mar 30 2020 03:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38820 * 119.69886 * 2 1 4 4 C 1.36479 * 120.29922 * 180.02562 * 3 2 1 5 5 C 1.41295 * 119.69281 * 0.02562 * 4 3 2 6 6 C 1.40345 * 120.29388 * 179.97438 * 5 4 3 7 7 H 1.07998 * 119.99999 * 206.31544 * 6 5 4 8 8 C 1.46545 * 119.99877 * 26.31202 * 6 5 4 9 9 N 1.29504 * 119.99793 * 11.58524 * 8 6 5 10 10 Si 1.86795 * 120.00099 * 191.58789 * 8 6 5 11 11 H 1.48499 * 109.46973 * 0.02562 * 10 8 6 12 12 H 1.48509 * 109.47041 * 119.99809 * 10 8 6 13 13 H 1.48493 * 109.47265 * 240.00347 * 10 8 6 14 14 C 1.41260 * 119.41768 * 359.73240 * 5 4 3 15 15 C 1.50695 * 120.15772 * 180.27114 * 14 5 4 16 16 C 1.36531 * 119.68936 * 0.53444 * 14 5 4 17 17 N 1.48010 * 119.84763 * 179.73651 * 16 14 5 18 18 O 1.31697 * 120.00309 * 269.72447 * 17 16 14 19 19 O 1.31707 * 119.99892 * 89.45212 * 17 16 14 20 20 H 1.09006 * 109.46452 * 269.96534 * 1 2 3 21 21 H 1.08994 * 109.47536 * 29.96986 * 1 2 3 22 22 H 1.09001 * 109.47246 * 149.97423 * 1 2 3 23 23 H 1.08001 * 119.84742 * 0.02562 * 3 2 1 24 24 H 1.08005 * 120.15834 * 180.02562 * 4 3 2 25 25 H 0.97006 * 119.99848 * 179.97438 * 9 8 6 26 26 H 1.08999 * 109.47150 * 270.26376 * 15 14 5 27 27 H 1.09001 * 109.46682 * 30.26009 * 15 14 5 28 28 H 1.08996 * 109.47612 * 150.26440 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.2058 0.0000 4 6 3.5595 1.2201 -0.0005 5 6 4.2722 0.0001 -0.0016 6 6 5.6757 0.0001 -0.0027 7 1 6.2154 -0.8381 -0.4181 8 6 6.4088 1.1375 0.5598 9 7 5.7816 2.0324 1.2546 10 14 8.2480 1.2965 0.2745 11 1 8.7223 0.1530 -0.5457 12 1 8.5301 2.5678 -0.4395 13 1 8.9536 1.2954 1.5811 14 6 3.5598 -1.2196 0.0036 15 6 4.3031 -2.5305 0.0087 16 6 2.1946 -1.2054 -0.0015 17 7 1.4446 -2.4814 -0.0019 18 8 1.1103 -3.0484 -1.1426 19 8 1.1161 -3.0526 1.1385 20 1 -0.3632 -0.0006 1.0278 21 1 -0.3634 0.8902 -0.5133 22 1 -0.3634 -0.8898 -0.5142 23 1 1.6474 2.1369 0.0004 24 1 4.0923 2.1596 -0.0001 25 1 6.2670 2.7851 1.6273 26 1 4.4861 -2.8484 -1.0177 27 1 5.2546 -2.4066 0.5257 28 1 3.7063 -3.2847 0.5216 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307049834.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:53 Heat of formation + Delta-G solvation = 23.530926 kcal Electronic energy + Delta-G solvation = -14742.332603 eV Core-core repulsion = 12147.885115 eV Total energy + Delta-G solvation = -2594.447488 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.21654 -37.34280 -34.31808 -33.65024 -32.72385 -31.08927 -28.11530 -27.21646 -24.99761 -23.75524 -20.81680 -20.00930 -18.33552 -17.50808 -16.31018 -15.95672 -15.28817 -14.22221 -13.73923 -13.36383 -13.32046 -12.62777 -12.61196 -12.24927 -11.86233 -11.61381 -11.33893 -11.26369 -10.88591 -10.81388 -10.76781 -10.57160 -10.06875 -10.01290 -9.87165 -9.66542 -8.15839 -7.80740 -7.30275 -4.77842 0.53284 2.06595 2.10296 2.32432 2.80639 2.83075 2.86088 3.55130 4.02656 5.00902 5.49650 5.63235 5.86286 5.95128 6.06474 6.06873 6.24328 6.28322 6.34398 6.44153 6.48223 6.71403 6.78106 7.05643 7.16773 7.40039 7.43885 7.52062 7.63764 8.05189 8.25214 8.42710 9.57411 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.039446 B = 0.008989 C = 0.007754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.666387 B = 3114.031299 C = 3610.234850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.197 4.197 3 C -0.081 4.081 4 C -0.150 4.150 5 C 0.117 3.883 6 C -0.442 4.442 7 H 0.093 0.907 8 C 0.072 3.928 9 N -0.753 5.753 10 Si 0.925 3.075 11 H -0.253 1.253 12 H -0.266 1.266 13 H -0.268 1.268 14 C -0.173 4.173 15 C -0.098 4.098 16 C 0.060 3.940 17 N -0.014 5.014 18 O -0.174 6.174 19 O -0.173 6.173 20 H 0.056 0.944 21 H 0.063 0.937 22 H 0.045 0.955 23 H 0.109 0.891 24 H 0.133 0.867 25 H 0.294 0.706 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.801 1.485 -1.040 1.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.200 4.200 3 C -0.100 4.100 4 C -0.169 4.169 5 C 0.113 3.887 6 C -0.468 4.468 7 H 0.111 0.889 8 C -0.155 4.155 9 N -0.373 5.373 10 Si 0.748 3.252 11 H -0.176 1.176 12 H -0.191 1.191 13 H -0.193 1.193 14 C -0.176 4.176 15 C -0.155 4.155 16 C -0.020 4.020 17 N 0.479 4.521 18 O -0.378 6.378 19 O -0.377 6.377 20 H 0.075 0.925 21 H 0.082 0.918 22 H 0.064 0.936 23 H 0.127 0.873 24 H 0.151 0.849 25 H 0.107 0.893 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.204 2.359 -0.891 2.794 hybrid contribution 0.421 -0.219 0.045 0.477 sum 1.624 2.140 -0.846 2.816 Atomic orbital electron populations 1.20542 0.92307 1.01535 1.01066 1.18725 0.94640 0.90102 1.16520 1.20208 0.94667 0.94481 1.00667 1.21451 0.92517 0.99132 1.03786 1.17259 0.93303 0.88724 0.89369 1.20838 0.90537 1.02357 1.33111 0.88930 1.27555 1.02380 0.93742 0.91804 1.69080 1.40266 1.08562 1.19411 0.85963 0.79569 0.80044 0.79668 1.17620 1.19106 1.19306 1.19230 0.88449 0.96863 1.13039 1.20543 1.00817 0.93100 1.01013 1.19518 0.90384 0.78419 1.13631 1.51010 0.96532 1.03201 1.01375 1.96188 1.58644 1.67258 1.15690 1.96197 1.58762 1.67020 1.15707 0.92541 0.91840 0.93594 0.87264 0.84915 0.89334 0.92622 0.90396 0.94056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.85 9.76 36.01 0.35 -1.50 15 2 C -0.20 -4.40 5.91 -104.21 -0.62 -5.02 15 3 C -0.08 -1.76 9.62 -40.00 -0.38 -2.14 15 4 C -0.15 -3.50 8.72 -39.06 -0.34 -3.84 15 5 C 0.12 2.85 5.61 -106.80 -0.60 2.26 15 6 C -0.44 -10.34 8.39 -35.44 -0.30 -10.63 15 7 H 0.09 2.07 6.98 -52.49 -0.37 1.71 15 8 C 0.07 1.55 5.42 -15.19 -0.08 1.47 15 9 N -0.75 -16.63 10.87 55.99 0.61 -16.02 15 10 Si 0.93 16.02 29.66 -169.99 -5.04 10.98 15 11 H -0.25 -4.39 7.11 56.52 0.40 -3.99 15 12 H -0.27 -4.51 7.11 56.52 0.40 -4.11 15 13 H -0.27 -4.59 7.11 56.52 0.40 -4.19 15 14 C -0.17 -4.17 5.92 -104.09 -0.62 -4.78 15 15 C -0.10 -2.11 9.14 36.00 0.33 -1.78 15 16 C 0.06 1.44 6.16 -80.37 -0.50 0.95 15 17 N -0.01 -0.33 2.68 33.76 0.09 -0.24 15 18 O -0.17 -4.04 19.90 -31.57 -0.63 -4.67 15 19 O -0.17 -4.06 19.86 -31.57 -0.63 -4.69 15 20 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 21 H 0.06 1.03 8.08 -51.93 -0.42 0.61 15 22 H 0.04 0.89 7.34 -51.93 -0.38 0.51 15 23 H 0.11 2.03 8.06 -52.49 -0.42 1.60 15 24 H 0.13 3.09 6.10 -52.48 -0.32 2.77 15 25 H 0.29 5.73 8.27 -40.82 -0.34 5.40 15 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 27 H 0.08 1.60 6.83 -51.93 -0.35 1.24 15 28 H 0.04 0.88 7.31 -51.93 -0.38 0.50 15 LS Contribution 254.18 15.07 3.83 3.83 Total: -1.00 -25.36 254.18 -7.14 -32.51 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -2.62 Total: 3.34 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -2.75 Total: -25.02 kcal Atomic # 7 Polarization: -16.97 SS G_CDS: 0.70 Total: -16.27 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -1.26 Total: -9.36 kcal Atomic # 14 Polarization: 16.02 SS G_CDS: -5.04 Total: 10.98 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -25.36 -7.14 -32.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307049834.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.036 kcal (2) G-P(sol) polarization free energy of solvation -25.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds