Wall clock time and date at job start Mon Mar 30 2020 03:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38258 * 119.99859 * 2 1 4 4 C 1.38212 * 119.99856 * 179.83686 * 3 2 1 5 5 C 1.38260 * 119.99619 * 0.44175 * 4 3 2 6 6 C 1.50697 * 119.99731 * 179.78850 * 5 4 3 7 7 C 1.50709 * 109.47198 * 100.86204 * 6 5 4 8 8 H 1.08004 * 119.99828 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00019 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00001 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99708 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47347 * 89.99930 * 11 9 7 13 13 H 1.48502 * 109.47038 * 209.99713 * 11 9 7 14 14 H 1.48494 * 109.47313 * 329.99529 * 11 9 7 15 15 C 1.38213 * 120.00122 * 359.51407 * 5 4 3 16 16 N 1.48022 * 119.99689 * 180.25419 * 15 5 4 17 17 O 1.21800 * 119.99406 * 185.89767 * 16 15 5 18 18 O 1.21799 * 120.00128 * 5.89660 * 16 15 5 19 19 C 1.38210 * 119.99461 * 180.02562 * 2 1 3 20 20 H 1.08999 * 109.46791 * 269.97655 * 1 2 3 21 21 H 1.08996 * 109.47053 * 29.97448 * 1 2 3 22 22 H 1.08993 * 109.46923 * 149.97840 * 1 2 3 23 23 H 1.07998 * 119.99945 * 0.02562 * 3 2 1 24 24 H 1.07995 * 119.99995 * 180.23118 * 4 3 2 25 25 H 1.08998 * 109.47267 * 340.86482 * 6 5 4 26 26 H 1.08999 * 109.47130 * 220.85889 * 6 5 4 27 27 H 0.97002 * 119.99382 * 180.02562 * 10 9 7 28 28 H 1.07993 * 120.01009 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1974 0.0034 5 6 4.2717 0.0000 -0.0024 6 6 5.7787 0.0000 -0.0035 7 6 6.2821 -0.2740 1.3903 8 1 5.5808 -0.4327 2.1963 9 6 7.6378 -0.3220 1.6367 10 7 8.4918 -0.1293 0.6551 11 14 8.2617 -0.6623 3.3642 12 1 8.4275 -2.1261 3.5513 13 1 9.5697 0.0130 3.5601 14 1 7.2840 -0.1443 4.3545 15 6 3.5806 -1.1970 -0.0015 16 7 4.3208 -2.4788 -0.0020 17 8 3.7164 -3.5308 -0.1096 18 8 5.5341 -2.4816 0.1051 19 6 2.1980 -1.1970 -0.0005 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3633 0.8902 -0.5134 22 1 -0.3633 -0.8897 -0.5141 23 1 1.6583 2.1326 0.0004 24 1 4.1204 2.1326 0.0072 25 1 6.1418 0.9723 -0.3363 26 1 6.1415 -0.7743 -0.6795 27 1 9.4455 -0.1635 0.8285 28 1 1.6582 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307266179.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:58 Heat of formation + Delta-G solvation = 12.290102 kcal Electronic energy + Delta-G solvation = -14765.127509 eV Core-core repulsion = 12170.192582 eV Total energy + Delta-G solvation = -2594.934927 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.27833 -39.06772 -35.70921 -34.02893 -32.35417 -31.31091 -29.05350 -26.26411 -25.37976 -22.76223 -22.01889 -20.67391 -17.95069 -17.44813 -16.76388 -16.18587 -15.52199 -15.21187 -14.40552 -14.07681 -13.80338 -12.70207 -12.55922 -12.48186 -11.91373 -11.69328 -11.63589 -11.19599 -10.82367 -10.65301 -10.47042 -10.12097 -9.90543 -9.57155 -9.47452 -9.07694 -8.39554 -8.24054 -6.04519 -4.04523 0.62427 1.46454 2.11484 2.36062 3.34199 3.40483 3.42021 3.79555 4.46300 4.77279 4.89572 5.06110 5.20556 5.35536 5.43420 5.52495 5.54194 5.78610 5.84449 6.11454 6.38129 6.42335 6.56977 6.87664 7.23572 7.42905 7.59463 7.85305 8.19985 8.65994 8.91634 9.55087 11.06421 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.032478 B = 0.009437 C = 0.008299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.914253 B = 2966.401989 C = 3372.910526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.120 4.120 3 C -0.075 4.075 4 C -0.125 4.125 5 C 0.022 3.978 6 C 0.036 3.964 7 C -0.493 4.493 8 H 0.050 0.950 9 C 0.069 3.931 10 N -0.885 5.885 11 Si 0.895 3.105 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.276 1.276 15 C -0.045 4.045 16 N 0.022 4.978 17 O -0.243 6.243 18 O -0.076 6.076 19 C -0.063 4.063 20 H 0.069 0.931 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.131 0.869 24 H 0.141 0.859 25 H 0.034 0.966 26 H 0.063 0.937 27 H 0.263 0.737 28 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.770 2.990 -1.690 13.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.144 4.144 5 C 0.020 3.980 6 C 0.000 4.000 7 C -0.532 4.532 8 H 0.068 0.932 9 C -0.133 4.133 10 N -0.523 5.523 11 Si 0.723 3.277 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.201 1.201 15 C -0.129 4.129 16 N 0.536 4.464 17 O -0.434 6.434 18 O -0.309 6.309 19 C -0.082 4.082 20 H 0.088 0.912 21 H 0.086 0.914 22 H 0.085 0.915 23 H 0.148 0.852 24 H 0.159 0.841 25 H 0.052 0.948 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.117 3.469 -1.759 13.681 hybrid contribution 0.583 -0.554 0.978 1.266 sum -12.534 2.915 -0.781 12.892 Atomic orbital electron populations 1.20700 0.90303 1.02810 1.02386 1.19657 0.96360 0.91974 1.04082 1.21359 0.94414 0.97665 0.95907 1.21178 0.93471 0.97886 1.01816 1.20812 1.01051 0.89612 0.86512 1.18851 0.81869 0.99721 0.99599 1.20653 0.91528 1.49285 0.91693 0.93171 1.24850 0.96615 0.94740 0.97134 1.69929 1.02261 1.48781 1.31366 0.86540 0.78104 0.78798 0.84292 1.20223 1.21119 1.20091 1.20961 0.91759 0.84388 1.15807 1.43526 1.01692 1.02141 0.99020 1.94406 1.70589 1.20553 1.57893 1.94735 0.94712 1.93770 1.47709 1.20746 0.91297 0.99496 0.96625 0.91198 0.91368 0.91492 0.85159 0.84120 0.94818 0.91918 0.92698 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 36.01 0.36 -0.66 15 2 C -0.12 -1.65 5.88 -104.62 -0.62 -2.27 15 3 C -0.08 -1.03 9.70 -39.58 -0.38 -1.41 15 4 C -0.12 -2.11 9.67 -39.58 -0.38 -2.49 15 5 C 0.02 0.45 5.08 -104.62 -0.53 -0.08 15 6 C 0.04 0.91 4.40 -29.03 -0.13 0.78 15 7 C -0.49 -13.58 7.43 -34.44 -0.26 -13.83 15 8 H 0.05 1.40 7.74 -52.48 -0.41 0.99 15 9 C 0.07 1.94 5.46 -17.82 -0.10 1.84 15 10 N -0.88 -25.70 13.29 55.43 0.74 -24.96 15 11 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 15 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 14 H -0.28 -6.58 7.11 56.52 0.40 -6.17 15 15 C -0.05 -0.95 6.82 -79.95 -0.54 -1.49 15 16 N 0.02 0.52 4.45 33.96 0.15 0.67 15 17 O -0.24 -5.52 18.46 -29.46 -0.54 -6.06 15 18 O -0.08 -1.99 14.18 -29.46 -0.42 -2.40 15 19 C -0.06 -1.05 9.21 -39.58 -0.36 -1.41 15 20 H 0.07 0.62 8.14 -51.93 -0.42 0.19 15 21 H 0.07 0.54 8.09 -51.93 -0.42 0.12 15 22 H 0.07 0.59 8.08 -51.93 -0.42 0.17 15 23 H 0.13 1.31 8.06 -52.49 -0.42 0.89 15 24 H 0.14 2.15 8.03 -52.49 -0.42 1.73 15 25 H 0.03 0.85 7.99 -51.93 -0.42 0.44 15 26 H 0.06 1.72 6.17 -51.93 -0.32 1.40 15 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 28 H 0.14 2.13 7.62 -52.49 -0.40 1.73 15 LS Contribution 253.14 15.07 3.81 3.81 Total: -1.00 -30.61 253.14 -7.01 -37.61 By element: Atomic # 1 Polarization: -1.54 SS G_CDS: -2.78 Total: -4.32 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -2.94 Total: -21.03 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.89 Total: -24.29 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.96 Total: -8.47 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.61 -7.01 -37.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307266179.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.903 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds