Wall clock time and date at job start Mon Mar 30 2020 03:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38258 * 119.99859 * 2 1 4 4 C 1.38212 * 119.99856 * 179.83686 * 3 2 1 5 5 C 1.38260 * 119.99619 * 0.44175 * 4 3 2 6 6 C 1.50697 * 119.99731 * 179.78850 * 5 4 3 7 7 C 1.50709 * 109.47198 * 100.86204 * 6 5 4 8 8 H 1.08004 * 119.99828 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00019 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00001 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99708 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47347 * 89.99930 * 11 9 7 13 13 H 1.48502 * 109.47038 * 209.99713 * 11 9 7 14 14 H 1.48494 * 109.47313 * 329.99529 * 11 9 7 15 15 C 1.38213 * 120.00122 * 359.51407 * 5 4 3 16 16 N 1.48022 * 119.99689 * 180.25419 * 15 5 4 17 17 O 1.21800 * 119.99406 * 185.89767 * 16 15 5 18 18 O 1.21799 * 120.00128 * 5.89660 * 16 15 5 19 19 C 1.38210 * 119.99461 * 180.02562 * 2 1 3 20 20 H 1.08999 * 109.46791 * 269.97655 * 1 2 3 21 21 H 1.08996 * 109.47053 * 29.97448 * 1 2 3 22 22 H 1.08993 * 109.46923 * 149.97840 * 1 2 3 23 23 H 1.07998 * 119.99945 * 0.02562 * 3 2 1 24 24 H 1.07995 * 119.99995 * 180.23118 * 4 3 2 25 25 H 1.08998 * 109.47267 * 340.86482 * 6 5 4 26 26 H 1.08999 * 109.47130 * 220.85889 * 6 5 4 27 27 H 0.97002 * 119.99382 * 180.02562 * 10 9 7 28 28 H 1.07993 * 120.01009 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1974 0.0034 5 6 4.2717 0.0000 -0.0024 6 6 5.7787 0.0000 -0.0035 7 6 6.2821 -0.2740 1.3903 8 1 5.5808 -0.4327 2.1963 9 6 7.6378 -0.3220 1.6367 10 7 8.4918 -0.1293 0.6551 11 14 8.2617 -0.6623 3.3642 12 1 8.4275 -2.1261 3.5513 13 1 9.5697 0.0130 3.5601 14 1 7.2840 -0.1443 4.3545 15 6 3.5806 -1.1970 -0.0015 16 7 4.3208 -2.4788 -0.0020 17 8 3.7164 -3.5308 -0.1096 18 8 5.5341 -2.4816 0.1051 19 6 2.1980 -1.1970 -0.0005 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3633 0.8902 -0.5134 22 1 -0.3633 -0.8897 -0.5141 23 1 1.6583 2.1326 0.0004 24 1 4.1204 2.1326 0.0072 25 1 6.1418 0.9723 -0.3363 26 1 6.1415 -0.7743 -0.6795 27 1 9.4455 -0.1635 0.8285 28 1 1.6582 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307266179.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:58 Heat of formation + Delta-G solvation = -5.500798 kcal Electronic energy + Delta-G solvation = -14765.898980 eV Core-core repulsion = 12170.192582 eV Total energy + Delta-G solvation = -2595.706398 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.02398 -40.46345 -37.51400 -35.71342 -34.10222 -32.71944 -30.62206 -27.73263 -27.07907 -24.46084 -23.55305 -22.18072 -19.65539 -19.05935 -18.68688 -18.13608 -17.02847 -16.59785 -16.20295 -15.35652 -14.87141 -14.39722 -14.10695 -13.82800 -13.32556 -13.09196 -12.95050 -12.75839 -12.65834 -12.37516 -12.30422 -11.99525 -11.77959 -11.56220 -11.32921 -10.51996 -10.40100 -9.67458 -8.17383 -6.24299 -0.97810 0.14527 0.51721 0.73430 1.37128 1.42015 1.48665 2.36949 2.50905 3.17837 3.57813 3.62936 3.93412 4.06358 4.10799 4.34185 4.70300 4.75363 4.88235 4.90372 5.12433 5.21217 5.25316 5.33018 5.46227 5.62010 5.70544 5.78351 6.12910 6.74893 6.83935 7.39134 8.94264 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.032478 B = 0.009437 C = 0.008299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.914253 B = 2966.401989 C = 3372.910526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.098 4.098 3 C -0.049 4.049 4 C -0.129 4.129 5 C -0.013 4.013 6 C 0.046 3.954 7 C -0.499 4.499 8 H 0.039 0.961 9 C 0.017 3.983 10 N -0.922 5.922 11 Si 0.955 3.045 12 H -0.281 1.281 13 H -0.274 1.274 14 H -0.266 1.266 15 C -0.070 4.070 16 N 0.027 4.973 17 O -0.204 6.204 18 O -0.168 6.168 19 C -0.067 4.067 20 H 0.086 0.914 21 H 0.096 0.904 22 H 0.077 0.923 23 H 0.184 0.816 24 H 0.153 0.847 25 H 0.018 0.982 26 H 0.027 0.973 27 H 0.265 0.735 28 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.620 4.290 -1.022 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.099 4.099 3 C -0.066 4.066 4 C -0.148 4.148 5 C -0.014 4.014 6 C 0.009 3.991 7 C -0.538 4.538 8 H 0.057 0.943 9 C -0.182 4.182 10 N -0.562 5.562 11 Si 0.780 3.220 12 H -0.207 1.207 13 H -0.199 1.199 14 H -0.191 1.191 15 C -0.154 4.154 16 N 0.535 4.465 17 O -0.411 6.411 18 O -0.380 6.380 19 C -0.086 4.086 20 H 0.105 0.895 21 H 0.115 0.885 22 H 0.096 0.904 23 H 0.201 0.799 24 H 0.170 0.830 25 H 0.036 0.964 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -16.804 4.847 -1.069 17.522 hybrid contribution 1.398 -0.970 0.689 1.836 sum -15.406 3.878 -0.380 15.891 Atomic orbital electron populations 1.20861 0.86326 1.04882 1.04031 1.20288 0.98847 0.90551 1.00209 1.21925 0.92765 0.99952 0.92005 1.21399 0.95330 0.96542 1.01490 1.20578 0.98824 0.91737 0.90256 1.18464 0.85511 0.97293 0.97797 1.20839 0.91605 1.48538 0.92770 0.94259 1.25655 0.96965 0.94751 1.00838 1.70040 1.02446 1.50462 1.33283 0.85613 0.78087 0.78260 0.80084 1.20678 1.19897 1.19058 1.21240 0.93116 0.82426 1.18596 1.44042 1.01592 1.03242 0.97593 1.94324 1.70110 1.21824 1.54838 1.94773 0.96067 1.94320 1.52886 1.21125 0.89264 1.01825 0.96379 0.89513 0.88518 0.90409 0.79864 0.82979 0.96350 0.95549 0.92647 0.82595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 10.01 71.24 0.71 -0.60 15 2 C -0.10 -2.20 5.88 -19.86 -0.12 -2.31 15 3 C -0.05 -1.08 9.70 22.27 0.22 -0.86 15 4 C -0.13 -4.11 9.67 22.27 0.22 -3.90 15 5 C -0.01 -0.54 5.08 -19.87 -0.10 -0.64 15 6 C 0.05 2.48 4.40 29.10 0.13 2.61 15 7 C -0.50 -28.94 7.43 25.60 0.19 -28.75 15 8 H 0.04 2.29 7.74 -2.91 -0.02 2.26 15 9 C 0.02 0.98 5.46 84.65 0.46 1.44 15 10 N -0.92 -56.42 13.29 21.45 0.28 -56.13 15 11 Si 0.95 45.96 29.54 68.60 2.03 47.99 15 12 H -0.28 -13.60 7.11 99.48 0.71 -12.89 15 13 H -0.27 -12.56 7.11 99.48 0.71 -11.85 15 14 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 15 C -0.07 -2.91 6.82 36.37 0.25 -2.66 15 16 N 0.03 1.29 4.45 -46.46 -0.21 1.08 15 17 O -0.20 -9.27 18.46 18.89 0.35 -8.92 15 18 O -0.17 -9.45 14.18 18.89 0.27 -9.18 15 19 C -0.07 -2.05 9.21 22.27 0.21 -1.85 15 20 H 0.09 0.93 8.14 -2.39 -0.02 0.91 15 21 H 0.10 0.77 8.09 -2.39 -0.02 0.75 15 22 H 0.08 0.89 8.08 -2.39 -0.02 0.87 15 23 H 0.18 2.24 8.06 -2.91 -0.02 2.22 15 24 H 0.15 4.40 8.03 -2.91 -0.02 4.37 15 25 H 0.02 1.00 7.99 -2.39 -0.02 0.98 15 26 H 0.03 1.59 6.17 -2.39 -0.01 1.58 15 27 H 0.26 15.23 8.31 -92.71 -0.77 14.46 15 28 H 0.16 4.22 7.62 -2.91 -0.02 4.20 15 Total: -1.00 -72.42 253.14 6.05 -66.37 By element: Atomic # 1 Polarization: -4.86 SS G_CDS: 1.17 Total: -3.69 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 2.16 Total: -37.52 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.08 Total: -55.05 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.62 Total: -18.10 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -72.42 6.05 -66.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307266179.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.874 kcal (2) G-P(sol) polarization free energy of solvation -72.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds