Wall clock time and date at job start Mon Mar 30 2020 03:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00159 * 2 1 4 4 H 1.48507 * 109.46919 * 269.99901 * 3 2 1 5 5 H 1.48500 * 109.47282 * 29.99467 * 3 2 1 6 6 H 1.48499 * 109.47167 * 149.99845 * 3 2 1 7 7 C 1.38767 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00070 * 180.02562 * 7 2 1 9 9 N 1.36810 * 119.99867 * 0.02562 * 7 2 1 10 10 C 1.39427 * 120.00103 * 180.02562 * 9 7 2 11 11 C 1.39032 * 120.05212 * 359.97438 * 10 9 7 12 12 C 1.38076 * 120.01534 * 179.97438 * 11 10 9 13 13 C 1.38297 * 120.19484 * 0.09860 * 12 11 10 14 14 C 1.38816 * 120.24692 * 0.23937 * 13 12 11 15 15 C 1.38781 * 119.87871 * 359.36091 * 14 13 12 16 16 O 1.36139 * 120.82901 * 180.54824 * 15 14 13 17 17 C 1.43174 * 116.72273 * 343.02146 * 16 15 14 18 18 C 1.53473 * 108.23205 * 46.12467 * 17 16 15 19 19 O 1.36134 * 119.35088 * 179.97438 * 14 13 12 20 20 H 0.97005 * 119.99979 * 0.02562 * 1 2 3 21 21 H 0.97000 * 120.00594 * 359.97438 * 9 7 2 22 22 H 1.08003 * 119.99044 * 359.97438 * 11 10 9 23 23 H 1.07992 * 119.89977 * 180.02562 * 12 11 10 24 24 H 1.08002 * 119.87106 * 179.97438 * 13 12 11 25 25 H 1.09000 * 109.71543 * 165.80727 * 17 16 15 26 26 H 1.08994 * 109.71437 * 286.44054 * 17 16 15 27 27 H 1.08999 * 109.71335 * 60.02235 * 18 17 16 28 28 H 1.09002 * 109.70744 * 180.60909 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0100 -1.2018 0.0005 8 1 3.0899 -1.2018 0.0010 9 7 1.3259 -2.3866 0.0005 10 6 2.0229 -3.5941 0.0016 11 6 3.4132 -3.5954 0.0022 12 6 4.1028 -4.7917 0.0038 13 6 3.4145 -5.9912 0.0028 14 6 2.0264 -6.0010 -0.0048 15 6 1.3266 -4.8025 0.0019 16 8 -0.0347 -4.7896 0.0059 17 6 -0.6912 -6.0050 -0.3706 18 6 -0.0136 -7.1660 0.3699 19 8 1.3675 -7.1922 -0.0062 20 1 -0.4850 0.8401 -0.0004 21 1 0.3559 -2.3866 0.0005 22 1 3.9540 -2.6605 0.0013 23 1 5.1827 -4.7905 0.0046 24 1 3.9592 -6.9239 0.0036 25 1 -1.7439 -5.9558 -0.0920 26 1 -0.6017 -6.1532 -1.4467 27 1 -0.0986 -7.0152 1.4461 28 1 -0.4889 -8.1067 0.0919 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307322948.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:01 Heat of formation + Delta-G solvation = -44.300163 kcal Electronic energy + Delta-G solvation = -14797.047846 eV Core-core repulsion = 12199.658981 eV Total energy + Delta-G solvation = -2597.388865 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.34717 -37.35901 -36.39624 -34.63878 -31.77784 -30.49325 -27.94200 -27.55365 -24.66403 -24.01795 -20.99819 -20.34899 -17.97373 -17.77967 -16.79410 -16.17336 -15.13681 -14.72577 -14.38627 -14.10327 -13.93595 -13.68398 -13.41435 -12.69338 -12.56650 -11.68773 -11.58036 -11.17609 -11.13292 -10.89323 -10.47840 -10.42318 -10.03348 -9.87060 -9.71554 -8.66330 -7.24883 -6.60312 -6.56362 -3.71962 2.35989 2.51678 3.16346 3.16851 3.20266 3.73576 3.97241 4.04848 4.64887 4.78503 5.18543 5.19972 5.23904 5.29792 5.62086 5.81255 5.84446 6.00852 6.29798 6.42908 6.83553 7.04116 7.12834 7.25973 7.53973 7.60633 7.75275 7.82604 8.35613 8.75542 9.35591 9.56800 10.59884 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.041040 B = 0.008442 C = 0.007063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.094216 B = 3316.095735 C = 3963.584355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.019 3.981 3 Si 0.933 3.067 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.546 5.546 10 C 0.223 3.777 11 C -0.233 4.233 12 C -0.051 4.051 13 C -0.248 4.248 14 C 0.103 3.897 15 C -0.081 4.081 16 O -0.310 6.310 17 C 0.026 3.974 18 C 0.024 3.976 19 O -0.317 6.317 20 H 0.275 0.725 21 H 0.406 0.594 22 H 0.123 0.877 23 H 0.111 0.889 24 H 0.109 0.891 25 H 0.107 0.893 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.615 -8.300 0.037 8.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.184 4.184 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.430 4.430 8 H 0.122 0.878 9 N -0.148 5.148 10 C 0.099 3.901 11 C -0.258 4.258 12 C -0.071 4.071 13 C -0.271 4.271 14 C 0.058 3.942 15 C -0.131 4.131 16 O -0.226 6.226 17 C -0.050 4.050 18 C -0.052 4.052 19 O -0.232 6.232 20 H 0.085 0.915 21 H 0.241 0.759 22 H 0.140 0.860 23 H 0.129 0.871 24 H 0.127 0.873 25 H 0.125 0.875 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.409 -7.807 0.045 7.818 hybrid contribution -0.332 0.691 -0.046 0.769 sum 0.077 -7.116 -0.001 7.117 Atomic orbital electron populations 1.69725 1.06031 1.28515 1.48254 1.25333 0.95747 0.99956 0.97392 0.85799 0.79130 0.80543 0.78534 1.20216 1.20711 1.19235 1.19775 0.93155 0.82662 1.47427 0.87829 1.40929 1.08580 1.01517 1.63782 1.17135 0.91047 0.83777 0.98091 1.20215 0.91337 0.98013 1.16264 1.20360 0.98077 0.91363 0.97287 1.19568 0.89823 0.97848 1.19906 1.18442 0.91798 0.82408 1.01589 1.17967 0.81638 0.92424 1.21057 1.86205 1.16527 1.34062 1.85790 1.23337 0.97382 0.85106 0.99222 1.23445 0.81763 1.00266 0.99753 1.86199 1.23201 1.28945 1.84879 0.91522 0.75882 0.85955 0.87090 0.87332 0.87453 0.91752 0.91280 0.87439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.35 13.05 55.49 0.72 -23.63 15 2 C 0.02 0.50 5.50 -17.45 -0.10 0.40 15 3 Si 0.93 20.02 29.55 -169.99 -5.02 15.00 15 4 H -0.28 -5.87 7.11 56.52 0.40 -5.47 15 5 H -0.28 -6.02 7.11 56.52 0.40 -5.61 15 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 7 C -0.30 -7.92 9.55 -15.13 -0.14 -8.06 15 8 H 0.10 2.59 5.68 -52.49 -0.30 2.29 15 9 N -0.55 -14.32 5.42 -9.50 -0.05 -14.37 15 10 C 0.22 5.40 6.63 -83.65 -0.55 4.85 15 11 C -0.23 -5.17 9.30 -39.35 -0.37 -5.53 15 12 C -0.05 -1.00 10.03 -39.62 -0.40 -1.40 15 13 C -0.25 -4.93 9.96 -39.35 -0.39 -5.33 15 14 C 0.10 2.17 6.49 -39.17 -0.25 1.92 15 15 C -0.08 -1.86 6.51 -38.92 -0.25 -2.11 15 16 O -0.31 -6.65 9.61 -33.04 -0.32 -6.97 15 17 C 0.03 0.41 7.26 37.40 0.27 0.68 15 18 C 0.02 0.35 7.26 37.40 0.27 0.62 15 19 O -0.32 -5.93 10.42 -33.02 -0.34 -6.27 15 20 H 0.27 7.07 8.31 -40.82 -0.34 6.73 15 21 H 0.41 11.07 7.20 -40.82 -0.29 10.77 15 22 H 0.12 2.64 5.95 -52.48 -0.31 2.33 15 23 H 0.11 1.78 8.06 -52.49 -0.42 1.36 15 24 H 0.11 1.92 8.06 -52.49 -0.42 1.50 15 25 H 0.11 1.32 8.14 -51.93 -0.42 0.90 15 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 27 H 0.07 0.99 8.14 -51.93 -0.42 0.56 15 28 H 0.11 1.13 8.14 -51.93 -0.42 0.71 15 LS Contribution 243.71 15.07 3.67 3.67 Total: -1.00 -29.24 243.71 -5.83 -35.07 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -2.58 Total: 11.46 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -1.92 Total: -13.96 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.67 Total: -38.00 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.66 Total: -13.24 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.24 -5.83 -35.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307322948.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.234 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds