Wall clock time and date at job start Mon Mar 30 2020 03:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00159 * 2 1 4 4 H 1.48507 * 109.46919 * 269.99901 * 3 2 1 5 5 H 1.48500 * 109.47282 * 29.99467 * 3 2 1 6 6 H 1.48499 * 109.47167 * 149.99845 * 3 2 1 7 7 C 1.38767 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00070 * 180.02562 * 7 2 1 9 9 N 1.36810 * 119.99867 * 0.02562 * 7 2 1 10 10 C 1.39427 * 120.00103 * 180.02562 * 9 7 2 11 11 C 1.39032 * 120.05212 * 359.97438 * 10 9 7 12 12 C 1.38076 * 120.01534 * 179.97438 * 11 10 9 13 13 C 1.38297 * 120.19484 * 0.09860 * 12 11 10 14 14 C 1.38816 * 120.24692 * 0.23937 * 13 12 11 15 15 C 1.38781 * 119.87871 * 359.36091 * 14 13 12 16 16 O 1.36139 * 120.82901 * 180.54824 * 15 14 13 17 17 C 1.43174 * 116.72273 * 343.02146 * 16 15 14 18 18 C 1.53473 * 108.23205 * 46.12467 * 17 16 15 19 19 O 1.36134 * 119.35088 * 179.97438 * 14 13 12 20 20 H 0.97005 * 119.99979 * 0.02562 * 1 2 3 21 21 H 0.97000 * 120.00594 * 359.97438 * 9 7 2 22 22 H 1.08003 * 119.99044 * 359.97438 * 11 10 9 23 23 H 1.07992 * 119.89977 * 180.02562 * 12 11 10 24 24 H 1.08002 * 119.87106 * 179.97438 * 13 12 11 25 25 H 1.09000 * 109.71543 * 165.80727 * 17 16 15 26 26 H 1.08994 * 109.71437 * 286.44054 * 17 16 15 27 27 H 1.08999 * 109.71335 * 60.02235 * 18 17 16 28 28 H 1.09002 * 109.70744 * 180.60909 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0100 -1.2018 0.0005 8 1 3.0899 -1.2018 0.0010 9 7 1.3259 -2.3866 0.0005 10 6 2.0229 -3.5941 0.0016 11 6 3.4132 -3.5954 0.0022 12 6 4.1028 -4.7917 0.0038 13 6 3.4145 -5.9912 0.0028 14 6 2.0264 -6.0010 -0.0048 15 6 1.3266 -4.8025 0.0019 16 8 -0.0347 -4.7896 0.0059 17 6 -0.6912 -6.0050 -0.3706 18 6 -0.0136 -7.1660 0.3699 19 8 1.3675 -7.1922 -0.0062 20 1 -0.4850 0.8401 -0.0004 21 1 0.3559 -2.3866 0.0005 22 1 3.9540 -2.6605 0.0013 23 1 5.1827 -4.7905 0.0046 24 1 3.9592 -6.9239 0.0036 25 1 -1.7439 -5.9558 -0.0920 26 1 -0.6017 -6.1532 -1.4467 27 1 -0.0986 -7.0152 1.4461 28 1 -0.4889 -8.1067 0.0919 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307322948.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:01 Heat of formation + Delta-G solvation = -63.556867 kcal Electronic energy + Delta-G solvation = -14797.882879 eV Core-core repulsion = 12199.658981 eV Total energy + Delta-G solvation = -2598.223898 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.88057 -39.01195 -37.94162 -36.38303 -33.61881 -31.89726 -29.68368 -29.09345 -26.53054 -25.45914 -22.67525 -21.87533 -19.65386 -19.44073 -18.35945 -17.72766 -16.85467 -16.23438 -15.92171 -15.80058 -15.53409 -15.19171 -14.98322 -14.26425 -14.07600 -13.47724 -13.27595 -12.83073 -12.68944 -12.47337 -12.09705 -11.86462 -11.79693 -11.49518 -11.23999 -10.48659 -8.86653 -8.45423 -8.40326 -5.69259 0.69075 0.83466 1.42304 1.49872 1.55858 2.26045 2.34629 2.56340 2.89520 3.34597 3.38411 3.62801 4.03425 4.16336 4.19525 4.44516 4.46928 4.65480 4.75831 4.81515 5.14653 5.31256 5.41665 5.49257 5.79178 5.93276 6.06788 6.24261 6.75077 6.82643 7.51404 7.65461 8.73541 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.041040 B = 0.008442 C = 0.007063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.094216 B = 3316.095735 C = 3963.584355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.035 4.035 3 Si 1.003 2.997 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.317 4.317 8 H 0.110 0.890 9 N -0.578 5.578 10 C 0.198 3.802 11 C -0.246 4.246 12 C -0.044 4.044 13 C -0.235 4.235 14 C 0.095 3.905 15 C -0.093 4.093 16 O -0.340 6.340 17 C 0.015 3.985 18 C 0.021 3.979 19 O -0.322 6.322 20 H 0.274 0.726 21 H 0.392 0.608 22 H 0.121 0.879 23 H 0.153 0.847 24 H 0.139 0.861 25 H 0.141 0.859 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.904 -10.228 0.072 10.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.233 4.233 3 Si 0.826 3.174 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.447 4.447 8 H 0.127 0.873 9 N -0.183 5.183 10 C 0.079 3.921 11 C -0.271 4.271 12 C -0.063 4.063 13 C -0.258 4.258 14 C 0.049 3.951 15 C -0.142 4.142 16 O -0.256 6.256 17 C -0.060 4.060 18 C -0.054 4.054 19 O -0.237 6.237 20 H 0.083 0.917 21 H 0.226 0.774 22 H 0.139 0.861 23 H 0.171 0.829 24 H 0.157 0.843 25 H 0.159 0.841 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.741 -9.814 0.080 9.968 hybrid contribution -0.715 0.876 -0.058 1.132 sum 1.026 -8.939 0.021 8.997 Atomic orbital electron populations 1.69850 1.07573 1.29017 1.50995 1.26256 0.96550 1.03140 0.97362 0.84760 0.78040 0.76067 0.78543 1.19807 1.20737 1.18059 1.20095 0.93544 0.83354 1.47690 0.87289 1.40871 1.07802 1.02085 1.67586 1.17712 0.92238 0.84058 0.98057 1.20467 0.90770 0.99353 1.16518 1.20791 1.00147 0.90048 0.95343 1.20103 0.89644 0.99244 1.16765 1.18700 0.92621 0.82739 1.01051 1.18218 0.82640 0.92666 1.20685 1.86167 1.16069 1.37284 1.86081 1.23774 0.98868 0.83677 0.99716 1.23821 0.79719 1.01980 0.99842 1.86188 1.25247 1.27471 1.84747 0.91735 0.77449 0.86069 0.82937 0.84317 0.84103 0.91480 0.90991 0.82617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.60 13.05 21.64 0.28 -53.32 15 2 C -0.04 -1.89 5.50 84.85 0.47 -1.42 15 3 Si 1.00 42.01 29.55 68.60 2.03 44.04 15 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 15 5 H -0.28 -11.65 7.11 99.48 0.71 -10.95 15 6 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 7 C -0.32 -17.33 9.55 84.04 0.80 -16.53 15 8 H 0.11 5.58 5.68 -2.92 -0.02 5.57 15 9 N -0.58 -31.67 5.42 -183.98 -1.00 -32.66 15 10 C 0.20 9.76 6.63 38.42 0.25 10.02 15 11 C -0.25 -10.75 9.30 22.42 0.21 -10.54 15 12 C -0.04 -1.60 10.03 22.25 0.22 -1.37 15 13 C -0.24 -8.54 9.96 22.42 0.22 -8.31 15 14 C 0.09 3.80 6.49 22.54 0.15 3.95 15 15 C -0.09 -4.21 6.51 22.70 0.15 -4.06 15 16 O -0.34 -14.66 9.61 -82.85 -0.80 -15.45 15 17 C 0.01 0.44 7.26 72.14 0.52 0.96 15 18 C 0.02 0.55 7.26 72.14 0.52 1.08 15 19 O -0.32 -11.02 10.42 -82.79 -0.86 -11.89 15 20 H 0.27 14.72 8.31 -92.70 -0.77 13.95 15 21 H 0.39 22.73 7.20 -92.71 -0.67 22.06 15 22 H 0.12 5.23 5.95 -2.91 -0.02 5.21 15 23 H 0.15 4.19 8.06 -2.91 -0.02 4.17 15 24 H 0.14 4.22 8.06 -2.91 -0.02 4.20 15 25 H 0.14 3.13 8.14 -2.39 -0.02 3.11 15 26 H 0.07 1.94 8.14 -2.39 -0.02 1.92 15 27 H 0.07 1.86 8.14 -2.39 -0.02 1.84 15 28 H 0.16 2.53 8.14 -2.39 -0.02 2.51 15 Total: -1.00 -65.42 243.71 3.70 -61.72 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: 0.52 Total: 33.80 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 3.52 Total: -26.24 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -0.72 Total: -85.98 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -1.66 Total: -27.34 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -65.42 3.70 -61.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307322948.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.833 kcal (2) G-P(sol) polarization free energy of solvation -65.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds