Wall clock time and date at job start Mon Mar 30 2020 03:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38814 * 119.84996 * 2 1 4 4 C 1.38776 * 120.59913 * 179.97438 * 3 2 1 5 5 C 1.36517 * 120.30205 * 0.02562 * 4 3 2 6 6 N 1.48009 * 120.15889 * 179.97438 * 5 4 3 7 7 O 1.31700 * 120.00083 * 356.43459 * 6 5 4 8 8 O 1.31704 * 120.00540 * 176.43172 * 6 5 4 9 9 C 1.41261 * 119.69003 * 0.02562 * 5 4 3 10 10 C 1.40345 * 120.28995 * 179.97438 * 9 5 4 11 11 H 1.07994 * 120.00357 * 48.45042 * 10 9 5 12 12 C 1.46548 * 119.99706 * 228.44507 * 10 9 5 13 13 N 1.29496 * 119.99861 * 16.75934 * 12 10 9 14 14 Si 1.86801 * 119.99683 * 196.75500 * 12 10 9 15 15 H 1.48498 * 109.47486 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.46866 * 120.00557 * 14 12 10 17 17 H 1.48507 * 109.46946 * 239.99889 * 14 12 10 18 18 C 1.36486 * 119.85217 * 179.72578 * 2 1 3 19 19 C 1.50697 * 120.15302 * 359.97438 * 18 2 1 20 20 H 1.09004 * 109.46760 * 89.99980 * 1 2 3 21 21 H 1.09004 * 109.47125 * 330.00104 * 1 2 3 22 22 H 1.08997 * 109.47139 * 210.00068 * 1 2 3 23 23 H 1.08005 * 119.70234 * 359.97438 * 3 2 1 24 24 H 1.08008 * 119.84884 * 180.02562 * 4 3 2 25 25 H 0.97003 * 119.99671 * 174.36260 * 13 12 10 26 26 H 1.09007 * 109.47052 * 90.00280 * 19 18 2 27 27 H 1.09000 * 109.47429 * 209.99821 * 19 18 2 28 28 H 1.09001 * 109.47600 * 330.00179 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.2040 0.0000 4 6 3.5856 1.2221 0.0005 5 6 4.2897 0.0526 0.0005 6 7 5.7696 0.0756 0.0005 7 8 6.4103 1.2241 -0.0704 8 8 6.4459 -1.0523 0.0715 9 6 3.5993 -1.1798 -0.0005 10 6 4.3106 -2.3897 -0.0011 11 1 5.1187 -2.5413 0.6990 12 6 3.9565 -3.4473 -0.9517 13 7 3.2306 -3.1703 -1.9877 14 14 4.5525 -5.1950 -0.6690 15 1 5.3583 -5.2478 0.5772 16 1 3.3836 -6.1019 -0.5408 17 1 5.3887 -5.6248 -1.8185 18 6 2.1864 -1.1837 0.0057 19 6 1.4330 -2.4889 0.0125 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3633 -0.8900 0.5138 23 1 1.6506 2.1351 -0.0004 24 1 4.1108 2.1659 0.0009 25 1 3.0643 -3.8503 -2.6592 26 1 1.2510 -2.8087 -1.0136 27 1 2.0223 -3.2459 0.5299 28 1 0.4807 -2.3561 0.5260 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307412958.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:06 Heat of formation + Delta-G solvation = 23.440474 kcal Electronic energy + Delta-G solvation = -15005.736391 eV Core-core repulsion = 12411.284981 eV Total energy + Delta-G solvation = -2594.451410 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.90672 -36.69100 -34.51722 -32.60426 -32.51093 -31.07424 -27.57324 -27.05151 -25.04410 -23.53359 -21.00354 -19.54217 -17.90819 -16.45154 -16.34574 -15.57205 -14.59819 -14.24842 -14.20531 -13.43268 -13.20955 -12.75415 -12.29823 -12.10315 -11.89896 -11.71452 -11.57105 -11.12097 -10.79829 -10.73933 -10.42069 -10.12426 -9.56955 -9.49862 -9.15521 -9.09549 -7.94234 -7.75590 -7.41926 -4.97340 0.96626 2.34463 2.71722 2.80337 2.83098 2.89092 3.10624 3.54931 3.98454 4.72861 5.55664 5.62447 5.81155 5.91498 6.02916 6.13197 6.31404 6.31859 6.38482 6.57258 6.61246 6.69012 7.00265 7.06254 7.19344 7.45213 7.55066 7.60085 7.88611 8.06066 8.24026 8.72239 9.38922 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.021326 B = 0.015411 C = 0.009465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.634657 B = 1816.436652 C = 2957.549335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.056 4.056 3 C -0.208 4.208 4 C -0.039 4.039 5 C -0.085 4.085 6 N 0.032 4.968 7 O -0.350 6.350 8 O -0.254 6.254 9 C 0.107 3.893 10 C -0.349 4.349 11 H 0.121 0.879 12 C 0.065 3.935 13 N -0.720 5.720 14 Si 0.926 3.074 15 H -0.246 1.246 16 H -0.264 1.264 17 H -0.264 1.264 18 C -0.104 4.104 19 C -0.094 4.094 20 H 0.064 0.936 21 H 0.056 0.944 22 H 0.066 0.934 23 H 0.112 0.888 24 H 0.120 0.880 25 H 0.301 0.699 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.908 -3.114 1.059 8.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.057 4.057 3 C -0.229 4.229 4 C -0.059 4.059 5 C -0.185 4.185 6 N 0.458 4.542 7 O -0.495 6.495 8 O -0.423 6.423 9 C 0.102 3.898 10 C -0.378 4.378 11 H 0.138 0.862 12 C -0.165 4.165 13 N -0.343 5.343 14 Si 0.747 3.253 15 H -0.169 1.169 16 H -0.189 1.189 17 H -0.188 1.188 18 C -0.106 4.106 19 C -0.150 4.150 20 H 0.083 0.917 21 H 0.075 0.925 22 H 0.084 0.916 23 H 0.130 0.870 24 H 0.138 0.862 25 H 0.114 0.886 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.313 -3.001 0.883 8.882 hybrid contribution 0.737 -0.458 -0.184 0.887 sum -7.576 -3.459 0.699 8.358 Atomic orbital electron populations 1.20815 0.92489 1.01833 1.01614 1.19330 0.94977 0.93024 0.98339 1.20380 0.92134 0.96786 1.13619 1.20209 0.94042 0.96274 0.95328 1.20072 0.75900 0.96108 1.26390 1.49788 1.04282 1.01186 0.98921 1.96074 1.72092 1.14823 1.66486 1.96070 1.69353 1.16911 1.59940 1.17065 0.91264 0.90583 0.90882 1.21783 1.11000 0.94068 1.10913 0.86151 1.27721 0.92214 1.02259 0.94329 1.69083 1.21775 1.37794 1.05604 0.85920 0.79898 0.78149 0.81356 1.16863 1.18859 1.18835 1.19578 0.92081 0.94134 1.04795 1.20751 0.97380 0.94905 1.01944 0.91728 0.92518 0.91571 0.87027 0.86236 0.88645 0.90854 0.92186 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 9.59 36.01 0.35 -1.32 15 2 C -0.06 -1.10 5.84 -105.04 -0.61 -1.71 15 3 C -0.21 -4.18 9.71 -39.17 -0.38 -4.56 15 4 C -0.04 -0.90 9.52 -40.00 -0.38 -1.28 15 5 C -0.09 -2.23 6.91 -79.43 -0.55 -2.77 15 6 N 0.03 0.92 4.98 34.22 0.17 1.09 15 7 O -0.35 -10.17 19.14 -31.57 -0.60 -10.78 15 8 O -0.25 -7.37 16.45 -31.57 -0.52 -7.89 15 9 C 0.11 2.66 5.26 -106.79 -0.56 2.10 15 10 C -0.35 -8.54 6.68 -35.44 -0.24 -8.77 15 11 H 0.12 3.05 6.49 -52.49 -0.34 2.71 15 12 C 0.06 1.40 3.82 -15.19 -0.06 1.34 15 13 N -0.72 -15.63 10.86 55.99 0.61 -15.02 15 14 Si 0.93 16.29 29.68 -169.99 -5.04 11.25 15 15 H -0.25 -4.42 7.11 56.52 0.40 -4.02 15 16 H -0.26 -4.34 7.11 56.52 0.40 -3.93 15 17 H -0.26 -4.64 7.11 56.52 0.40 -4.24 15 18 C -0.10 -2.27 5.59 -104.09 -0.58 -2.85 15 19 C -0.09 -1.76 7.87 36.00 0.28 -1.48 15 20 H 0.06 0.92 8.14 -51.93 -0.42 0.49 15 21 H 0.06 0.74 8.08 -51.93 -0.42 0.32 15 22 H 0.07 0.92 5.89 -51.93 -0.31 0.61 15 23 H 0.11 1.88 8.06 -52.48 -0.42 1.46 15 24 H 0.12 2.63 7.55 -52.48 -0.40 2.23 15 25 H 0.30 5.69 8.28 -40.82 -0.34 5.35 15 26 H 0.07 1.41 6.63 -51.92 -0.34 1.06 15 27 H 0.06 1.14 6.48 -51.93 -0.34 0.81 15 28 H 0.04 0.71 5.91 -51.93 -0.31 0.41 15 LS Contribution 244.76 15.07 3.69 3.69 Total: -1.00 -28.85 244.76 -6.86 -35.71 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -2.43 Total: 3.26 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -2.73 Total: -21.32 kcal Atomic # 7 Polarization: -14.70 SS G_CDS: 0.78 Total: -13.92 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -1.12 Total: -18.67 kcal Atomic # 14 Polarization: 16.29 SS G_CDS: -5.04 Total: 11.25 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -28.85 -6.86 -35.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307412958.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.150 kcal (2) G-P(sol) polarization free energy of solvation -28.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds