Wall clock time and date at job start Mon Mar 30 2020 03:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38814 * 119.84996 * 2 1 4 4 C 1.38776 * 120.59913 * 179.97438 * 3 2 1 5 5 C 1.36517 * 120.30205 * 0.02562 * 4 3 2 6 6 N 1.48009 * 120.15889 * 179.97438 * 5 4 3 7 7 O 1.31700 * 120.00083 * 356.43459 * 6 5 4 8 8 O 1.31704 * 120.00540 * 176.43172 * 6 5 4 9 9 C 1.41261 * 119.69003 * 0.02562 * 5 4 3 10 10 C 1.40345 * 120.28995 * 179.97438 * 9 5 4 11 11 H 1.07994 * 120.00357 * 48.45042 * 10 9 5 12 12 C 1.46548 * 119.99706 * 228.44507 * 10 9 5 13 13 N 1.29496 * 119.99861 * 16.75934 * 12 10 9 14 14 Si 1.86801 * 119.99683 * 196.75500 * 12 10 9 15 15 H 1.48498 * 109.47486 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.46866 * 120.00557 * 14 12 10 17 17 H 1.48507 * 109.46946 * 239.99889 * 14 12 10 18 18 C 1.36486 * 119.85217 * 179.72578 * 2 1 3 19 19 C 1.50697 * 120.15302 * 359.97438 * 18 2 1 20 20 H 1.09004 * 109.46760 * 89.99980 * 1 2 3 21 21 H 1.09004 * 109.47125 * 330.00104 * 1 2 3 22 22 H 1.08997 * 109.47139 * 210.00068 * 1 2 3 23 23 H 1.08005 * 119.70234 * 359.97438 * 3 2 1 24 24 H 1.08008 * 119.84884 * 180.02562 * 4 3 2 25 25 H 0.97003 * 119.99671 * 174.36260 * 13 12 10 26 26 H 1.09007 * 109.47052 * 90.00280 * 19 18 2 27 27 H 1.09000 * 109.47429 * 209.99821 * 19 18 2 28 28 H 1.09001 * 109.47600 * 330.00179 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.2040 0.0000 4 6 3.5856 1.2221 0.0005 5 6 4.2897 0.0526 0.0005 6 7 5.7696 0.0756 0.0005 7 8 6.4103 1.2241 -0.0704 8 8 6.4459 -1.0523 0.0715 9 6 3.5993 -1.1798 -0.0005 10 6 4.3106 -2.3897 -0.0011 11 1 5.1187 -2.5413 0.6990 12 6 3.9565 -3.4473 -0.9517 13 7 3.2306 -3.1703 -1.9877 14 14 4.5525 -5.1950 -0.6690 15 1 5.3583 -5.2478 0.5772 16 1 3.3836 -6.1019 -0.5408 17 1 5.3887 -5.6248 -1.8185 18 6 2.1864 -1.1837 0.0057 19 6 1.4330 -2.4889 0.0125 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3633 -0.8900 0.5138 23 1 1.6506 2.1351 -0.0004 24 1 4.1108 2.1659 0.0009 25 1 3.0643 -3.8503 -2.6592 26 1 1.2510 -2.8087 -1.0136 27 1 2.0223 -3.2459 0.5299 28 1 0.4807 -2.3561 0.5260 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307412958.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:05 Heat of formation + Delta-G solvation = 6.441499 kcal Electronic energy + Delta-G solvation = -15006.473522 eV Core-core repulsion = 12411.284981 eV Total energy + Delta-G solvation = -2595.188541 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.65751 -38.48389 -36.35371 -34.48110 -34.16499 -32.84775 -29.12313 -28.84382 -26.75043 -25.28850 -22.74104 -21.28647 -19.76451 -18.31711 -18.18640 -17.24833 -16.26209 -16.12835 -15.80346 -14.88838 -14.80852 -14.37406 -13.94607 -13.58190 -13.46062 -13.27068 -13.12305 -12.53191 -12.41697 -12.23943 -11.92653 -11.70648 -11.47137 -11.29129 -11.17785 -11.06323 -9.65066 -9.55307 -9.21373 -6.89807 -1.06025 0.63716 0.91085 1.28659 1.33541 1.38248 1.50516 2.08272 2.24257 2.93859 3.99099 4.14039 4.32486 4.35558 4.51914 4.61137 4.72080 4.87528 4.98765 5.04081 5.12250 5.27253 5.28489 5.43929 5.47194 5.64238 5.79994 5.85139 6.01620 6.11817 6.42758 6.81124 7.62048 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.021326 B = 0.015411 C = 0.009465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.634657 B = 1816.436652 C = 2957.549335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.067 4.067 3 C -0.158 4.158 4 C -0.087 4.087 5 C -0.082 4.082 6 N 0.023 4.977 7 O -0.447 6.447 8 O -0.350 6.350 9 C 0.050 3.950 10 C -0.301 4.301 11 H 0.102 0.898 12 C 0.029 3.971 13 N -0.710 5.710 14 Si 0.991 3.009 15 H -0.259 1.259 16 H -0.227 1.227 17 H -0.259 1.259 18 C -0.101 4.101 19 C -0.092 4.092 20 H 0.080 0.920 21 H 0.081 0.919 22 H 0.082 0.918 23 H 0.155 0.845 24 H 0.115 0.885 25 H 0.325 0.675 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.971 -5.688 0.465 14.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.068 4.068 3 C -0.180 4.180 4 C -0.106 4.106 5 C -0.189 4.189 6 N 0.411 4.589 7 O -0.567 6.567 8 O -0.491 6.491 9 C 0.045 3.955 10 C -0.332 4.332 11 H 0.119 0.881 12 C -0.201 4.201 13 N -0.333 5.333 14 Si 0.807 3.193 15 H -0.182 1.182 16 H -0.150 1.150 17 H -0.183 1.183 18 C -0.103 4.103 19 C -0.148 4.148 20 H 0.099 0.901 21 H 0.100 0.900 22 H 0.101 0.899 23 H 0.173 0.827 24 H 0.133 0.867 25 H 0.139 0.861 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.111 -5.493 0.288 14.218 hybrid contribution 1.651 0.004 -0.118 1.655 sum -11.460 -5.489 0.170 12.708 Atomic orbital electron populations 1.20889 0.88064 1.04027 1.03194 1.19919 0.98038 0.91766 0.97079 1.21048 0.90744 0.99141 1.07019 1.20410 0.95580 0.95393 0.99220 1.20710 0.75176 0.97895 1.25140 1.49764 1.04801 1.00341 1.04038 1.95967 1.72932 1.15401 1.72383 1.95943 1.70233 1.17375 1.65505 1.17581 0.93390 0.90178 0.94336 1.22331 1.08151 0.94757 1.07964 0.88067 1.28540 0.92814 1.05346 0.93434 1.68998 1.19035 1.40008 1.05256 0.85018 0.80519 0.73063 0.80713 1.18233 1.14968 1.18289 1.19974 0.90462 0.96724 1.03122 1.20815 0.98664 0.92902 1.02386 0.90130 0.89974 0.89927 0.82718 0.86653 0.86105 0.90693 0.92742 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.46 9.59 71.24 0.68 -1.78 15 2 C -0.07 -2.35 5.84 -20.14 -0.12 -2.46 15 3 C -0.16 -5.85 9.71 22.54 0.22 -5.63 15 4 C -0.09 -4.10 9.52 22.00 0.21 -3.89 15 5 C -0.08 -4.49 6.91 36.72 0.25 -4.24 15 6 N 0.02 1.49 4.98 -45.66 -0.23 1.26 15 7 O -0.45 -29.56 19.14 3.51 0.07 -29.49 15 8 O -0.35 -22.64 16.45 3.51 0.06 -22.58 15 9 C 0.05 2.49 5.26 -21.27 -0.11 2.38 15 10 C -0.30 -14.79 6.68 24.95 0.17 -14.63 15 11 H 0.10 5.37 6.49 -2.91 -0.02 5.35 15 12 C 0.03 1.18 3.82 87.21 0.33 1.51 15 13 N -0.71 -28.23 10.86 23.21 0.25 -27.98 15 14 Si 0.99 30.59 29.68 68.60 2.04 32.63 15 15 H -0.26 -8.59 7.11 99.48 0.71 -7.88 15 16 H -0.23 -5.82 7.11 99.48 0.71 -5.11 15 17 H -0.26 -7.90 7.11 99.48 0.71 -7.20 15 18 C -0.10 -4.09 5.59 -19.52 -0.11 -4.20 15 19 C -0.09 -2.99 7.87 71.24 0.56 -2.43 15 20 H 0.08 1.72 8.14 -2.38 -0.02 1.70 15 21 H 0.08 1.56 8.08 -2.39 -0.02 1.54 15 22 H 0.08 1.69 5.89 -2.39 -0.01 1.67 15 23 H 0.16 4.40 8.06 -2.91 -0.02 4.37 15 24 H 0.12 5.44 7.55 -2.91 -0.02 5.42 15 25 H 0.32 10.72 8.28 -92.71 -0.77 9.95 15 26 H 0.07 2.46 6.63 -2.38 -0.02 2.45 15 27 H 0.05 1.83 6.48 -2.39 -0.02 1.81 15 28 H 0.08 2.10 5.91 -2.39 -0.01 2.09 15 Total: -1.00 -70.83 244.76 5.46 -65.37 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 1.19 Total: 16.16 kcal Atomic # 6 Polarization: -37.45 SS G_CDS: 2.09 Total: -35.36 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.02 Total: -26.72 kcal Atomic # 8 Polarization: -52.20 SS G_CDS: 0.12 Total: -52.08 kcal Atomic # 14 Polarization: 30.59 SS G_CDS: 2.04 Total: 32.63 kcal Total: -70.83 5.46 -65.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307412958.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.810 kcal (2) G-P(sol) polarization free energy of solvation -70.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds