Wall clock time and date at job start Mon Mar 30 2020 03:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38264 * 119.99887 * 2 1 4 4 C 1.38217 * 119.99426 * 179.76507 * 3 2 1 5 5 C 1.38250 * 120.00397 * 0.48203 * 4 3 2 6 6 C 1.50707 * 119.99950 * 179.76620 * 5 4 3 7 7 C 1.50697 * 109.47222 * 270.02525 * 6 5 4 8 8 H 1.08001 * 120.00162 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99914 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99969 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 119.99837 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47587 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47200 * 120.00251 * 11 9 7 14 14 H 1.48503 * 109.47127 * 239.99643 * 11 9 7 15 15 C 1.38212 * 120.00267 * 359.79243 * 5 4 3 16 16 C 1.38215 * 120.00290 * 180.26989 * 2 1 3 17 17 N 1.48020 * 119.99732 * 0.02562 * 16 2 1 18 18 O 1.21803 * 119.99881 * 173.45355 * 17 16 2 19 19 O 1.21800 * 119.99978 * 353.46149 * 17 16 2 20 20 H 1.09000 * 109.47418 * 262.80536 * 1 2 3 21 21 H 1.09002 * 109.47262 * 142.80355 * 1 2 3 22 22 H 1.09000 * 109.47074 * 22.80735 * 1 2 3 23 23 H 1.07993 * 120.00209 * 0.02562 * 3 2 1 24 24 H 1.08007 * 119.99353 * 180.25564 * 4 3 2 25 25 H 1.08997 * 109.46693 * 30.02441 * 6 5 4 26 26 H 1.08997 * 109.46818 * 150.02210 * 6 5 4 27 27 H 0.97000 * 120.00192 * 180.02562 * 10 9 7 28 28 H 1.07991 * 120.00437 * 179.97438 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 0.0049 5 6 4.2717 0.0000 -0.0003 6 6 5.7787 0.0001 -0.0002 7 6 6.2811 0.0069 -1.4210 8 1 5.5793 0.0103 -2.2419 9 6 7.6367 0.0075 -1.6729 10 7 8.4913 0.0018 -0.6732 11 14 8.2594 0.0152 -3.4339 12 1 7.1045 0.0191 -4.3674 13 1 9.0848 1.2285 -3.6618 14 1 9.0841 -1.1965 -3.6727 15 6 3.5807 -1.1969 -0.0060 16 6 2.1981 -1.1969 -0.0056 17 7 1.4580 -2.4788 -0.0122 18 8 2.0611 -3.5296 -0.1375 19 8 0.2459 -2.4828 0.1074 20 1 -0.3634 -0.1287 1.0195 21 1 -0.3634 -0.8186 -0.6213 22 1 -0.3633 0.9473 -0.3984 23 1 1.6583 2.1327 0.0004 24 1 4.1204 2.1327 0.0091 25 1 6.1419 0.8876 0.5178 26 1 6.1420 -0.8923 0.5094 27 1 9.4449 0.0026 -0.8504 28 1 4.1206 -2.1322 -0.0104 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307443896.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:01 Heat of formation + Delta-G solvation = 4.661158 kcal Electronic energy + Delta-G solvation = -14367.265995 eV Core-core repulsion = 11772.000252 eV Total energy + Delta-G solvation = -2595.265743 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.89977 -39.20043 -36.35322 -34.23212 -32.40881 -31.50284 -29.12904 -26.68799 -25.28311 -22.97561 -22.33340 -20.93405 -18.37679 -17.85679 -17.27202 -16.50716 -15.58006 -15.33888 -14.69160 -14.03971 -13.71475 -12.73423 -12.69847 -12.62325 -11.97709 -11.80319 -11.50160 -11.27693 -11.07537 -10.85125 -10.76927 -10.69533 -10.37434 -9.87653 -9.69307 -9.15670 -8.60258 -8.29051 -6.22458 -4.28297 0.26599 1.42420 1.78149 1.81073 3.19766 3.28274 3.32184 3.75322 4.31108 4.69853 4.72611 5.11402 5.14372 5.34782 5.45231 5.57787 5.66430 5.70259 5.91708 6.14985 6.28215 6.42067 6.60127 6.69510 7.01124 7.27443 7.42616 7.71742 8.02016 8.05593 8.76174 9.37498 10.87355 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.036742 B = 0.007187 C = 0.006633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.879093 B = 3895.217989 C = 4220.365354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.049 4.049 3 C -0.126 4.126 4 C -0.067 4.067 5 C -0.037 4.037 6 C 0.048 3.952 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.062 3.938 10 N -0.889 5.889 11 Si 0.898 3.102 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.281 1.281 15 C -0.057 4.057 16 C -0.049 4.049 17 N 0.038 4.962 18 O -0.174 6.174 19 O -0.177 6.177 20 H 0.079 0.921 21 H 0.091 0.909 22 H 0.066 0.934 23 H 0.137 0.863 24 H 0.139 0.861 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.264 0.736 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.401 2.513 1.807 11.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.050 4.050 3 C -0.144 4.144 4 C -0.085 4.085 5 C -0.038 4.038 6 C 0.011 3.989 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.140 4.140 10 N -0.528 5.528 11 Si 0.725 3.275 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.207 1.207 15 C -0.076 4.076 16 C -0.132 4.132 17 N 0.552 4.448 18 O -0.388 6.388 19 O -0.388 6.388 20 H 0.098 0.902 21 H 0.110 0.890 22 H 0.085 0.915 23 H 0.155 0.845 24 H 0.157 0.843 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.880 3.096 1.853 11.463 hybrid contribution 0.348 -0.333 -0.958 1.072 sum -10.532 2.763 0.895 10.925 Atomic orbital electron populations 1.21162 0.89386 1.03615 1.03800 1.19648 0.97295 0.90686 0.97387 1.21045 0.94367 0.96481 1.02538 1.21612 0.93462 0.99343 0.94064 1.20795 1.00027 0.90366 0.92638 1.18441 0.82652 0.99302 0.98467 1.21022 0.91684 1.52303 0.90966 0.92316 1.24997 0.96781 0.94685 0.97565 1.69947 1.02392 1.49582 1.30833 0.86432 0.78955 0.77830 0.84256 1.19630 1.20777 1.20697 1.21048 0.90004 1.01207 0.95333 1.20980 0.92501 0.82398 1.17344 1.43695 1.00896 1.03155 0.97084 1.94532 1.70131 1.20513 1.53603 1.94399 0.96888 1.93879 1.53662 0.90237 0.89016 0.91521 0.84508 0.84298 0.94429 0.94586 0.92580 0.83345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 8.68 36.00 0.31 -1.19 15 2 C -0.05 -0.73 5.88 -104.62 -0.62 -1.35 15 3 C -0.13 -1.75 9.67 -39.58 -0.38 -2.13 15 4 C -0.07 -1.09 9.70 -39.58 -0.38 -1.47 15 5 C -0.04 -0.73 5.07 -104.62 -0.53 -1.26 15 6 C 0.05 1.13 5.10 -29.03 -0.15 0.98 15 7 C -0.52 -13.69 9.09 -34.44 -0.31 -14.00 15 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 15 9 C 0.06 1.67 5.46 -17.82 -0.10 1.58 15 10 N -0.89 -24.98 13.29 55.43 0.74 -24.25 15 11 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 15 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 14 H -0.28 -6.46 7.11 56.52 0.40 -6.05 15 15 C -0.06 -1.08 9.21 -39.58 -0.36 -1.44 15 16 C -0.05 -0.86 6.83 -79.95 -0.55 -1.41 15 17 N 0.04 0.69 4.45 33.96 0.15 0.84 15 18 O -0.17 -3.37 18.47 -29.46 -0.54 -3.92 15 19 O -0.18 -3.05 15.37 -29.46 -0.45 -3.50 15 20 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 21 H 0.09 1.21 5.87 -51.93 -0.30 0.90 15 22 H 0.07 0.65 8.03 -51.93 -0.42 0.23 15 23 H 0.14 1.42 8.05 -52.49 -0.42 1.00 15 24 H 0.14 2.05 8.06 -52.48 -0.42 1.63 15 25 H 0.04 0.91 8.09 -51.93 -0.42 0.49 15 26 H 0.04 0.90 8.09 -51.93 -0.42 0.48 15 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 28 H 0.15 2.85 7.63 -52.49 -0.40 2.45 15 LS Contribution 255.14 15.07 3.84 3.84 Total: -1.00 -28.27 255.14 -7.13 -35.40 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: -2.77 Total: -2.38 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -3.07 Total: -21.69 kcal Atomic # 7 Polarization: -24.29 SS G_CDS: 0.89 Total: -23.40 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -1.00 Total: -7.42 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.27 -7.13 -35.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307443896.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.057 kcal (2) G-P(sol) polarization free energy of solvation -28.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds