Wall clock time and date at job start Mon Mar 30 2020 03:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38264 * 119.99887 * 2 1 4 4 C 1.38217 * 119.99426 * 179.76507 * 3 2 1 5 5 C 1.38250 * 120.00397 * 0.48203 * 4 3 2 6 6 C 1.50707 * 119.99950 * 179.76620 * 5 4 3 7 7 C 1.50697 * 109.47222 * 270.02525 * 6 5 4 8 8 H 1.08001 * 120.00162 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99914 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99969 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 119.99837 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47587 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47200 * 120.00251 * 11 9 7 14 14 H 1.48503 * 109.47127 * 239.99643 * 11 9 7 15 15 C 1.38212 * 120.00267 * 359.79243 * 5 4 3 16 16 C 1.38215 * 120.00290 * 180.26989 * 2 1 3 17 17 N 1.48020 * 119.99732 * 0.02562 * 16 2 1 18 18 O 1.21803 * 119.99881 * 173.45355 * 17 16 2 19 19 O 1.21800 * 119.99978 * 353.46149 * 17 16 2 20 20 H 1.09000 * 109.47418 * 262.80536 * 1 2 3 21 21 H 1.09002 * 109.47262 * 142.80355 * 1 2 3 22 22 H 1.09000 * 109.47074 * 22.80735 * 1 2 3 23 23 H 1.07993 * 120.00209 * 0.02562 * 3 2 1 24 24 H 1.08007 * 119.99353 * 180.25564 * 4 3 2 25 25 H 1.08997 * 109.46693 * 30.02441 * 6 5 4 26 26 H 1.08997 * 109.46818 * 150.02210 * 6 5 4 27 27 H 0.97000 * 120.00192 * 180.02562 * 10 9 7 28 28 H 1.07991 * 120.00437 * 179.97438 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 0.0049 5 6 4.2717 0.0000 -0.0003 6 6 5.7787 0.0001 -0.0002 7 6 6.2811 0.0069 -1.4210 8 1 5.5793 0.0103 -2.2419 9 6 7.6367 0.0075 -1.6729 10 7 8.4913 0.0018 -0.6732 11 14 8.2594 0.0152 -3.4339 12 1 7.1045 0.0191 -4.3674 13 1 9.0848 1.2285 -3.6618 14 1 9.0841 -1.1965 -3.6727 15 6 3.5807 -1.1969 -0.0060 16 6 2.1981 -1.1969 -0.0056 17 7 1.4580 -2.4788 -0.0122 18 8 2.0611 -3.5296 -0.1375 19 8 0.2459 -2.4828 0.1074 20 1 -0.3634 -0.1287 1.0195 21 1 -0.3634 -0.8186 -0.6213 22 1 -0.3633 0.9473 -0.3984 23 1 1.6583 2.1327 0.0004 24 1 4.1204 2.1327 0.0091 25 1 6.1419 0.8876 0.5178 26 1 6.1420 -0.8923 0.5094 27 1 9.4449 0.0026 -0.8504 28 1 4.1206 -2.1322 -0.0104 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307443896.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:00 Heat of formation + Delta-G solvation = -9.903869 kcal Electronic energy + Delta-G solvation = -14367.897582 eV Core-core repulsion = 11772.000252 eV Total energy + Delta-G solvation = -2595.897330 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.31878 -40.54872 -37.77357 -35.91405 -34.13176 -32.81881 -30.67118 -28.20445 -26.78215 -24.64895 -23.66057 -22.38525 -19.77976 -19.32520 -18.72188 -18.54395 -16.94615 -16.67286 -16.48898 -15.31309 -14.92270 -14.44226 -14.18655 -13.89666 -13.37363 -13.27988 -13.09673 -12.87291 -12.63636 -12.45774 -12.42962 -12.23642 -11.75944 -11.62267 -11.54129 -10.66871 -10.45504 -9.72715 -8.27499 -6.40544 -1.11928 0.11563 0.40337 0.43259 1.37046 1.39579 1.50947 2.31302 2.47412 3.05500 3.47937 3.49905 3.88293 4.07758 4.10302 4.31539 4.54378 4.75215 4.76156 4.93388 5.06819 5.14139 5.16595 5.24200 5.33350 5.65997 5.67470 5.69818 6.05833 6.59793 6.71426 7.29144 8.82421 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.036742 B = 0.007187 C = 0.006633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.879093 B = 3895.217989 C = 4220.365354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.035 4.035 3 C -0.105 4.105 4 C -0.061 4.061 5 C -0.063 4.063 6 C 0.056 3.944 7 C -0.534 4.534 8 H 0.055 0.945 9 C 0.011 3.989 10 N -0.925 5.925 11 Si 0.963 3.037 12 H -0.267 1.267 13 H -0.272 1.272 14 H -0.280 1.280 15 C -0.073 4.073 16 C -0.064 4.064 17 N 0.037 4.963 18 O -0.235 6.235 19 O -0.132 6.132 20 H 0.095 0.905 21 H 0.082 0.918 22 H 0.104 0.896 23 H 0.190 0.810 24 H 0.155 0.845 25 H 0.025 0.975 26 H 0.005 0.995 27 H 0.267 0.733 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.848 4.615 1.091 14.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.037 4.037 3 C -0.123 4.123 4 C -0.079 4.079 5 C -0.064 4.064 6 C 0.019 3.981 7 C -0.572 4.572 8 H 0.073 0.927 9 C -0.189 4.189 10 N -0.565 5.565 11 Si 0.787 3.213 12 H -0.191 1.191 13 H -0.198 1.198 14 H -0.206 1.206 15 C -0.093 4.093 16 C -0.148 4.148 17 N 0.549 4.451 18 O -0.433 6.433 19 O -0.357 6.357 20 H 0.113 0.887 21 H 0.100 0.900 22 H 0.122 0.878 23 H 0.207 0.793 24 H 0.173 0.827 25 H 0.044 0.956 26 H 0.024 0.976 27 H 0.076 0.924 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.217 5.113 1.121 14.215 hybrid contribution 0.904 -0.892 -0.673 1.437 sum -12.312 4.220 0.448 13.023 Atomic orbital electron populations 1.21291 0.86574 1.05396 1.04700 1.20220 0.99228 0.89703 0.94510 1.21534 0.93099 0.97964 0.99703 1.21830 0.94930 0.98403 0.92706 1.20404 0.97780 0.92132 0.96089 1.18158 0.85984 0.97161 0.96817 1.21355 0.91955 1.51682 0.92201 0.92655 1.25843 0.97105 0.94371 1.01542 1.70055 1.02730 1.50752 1.32920 0.85431 0.78402 0.77991 0.79455 1.19088 1.19774 1.20603 1.20819 0.91086 1.00340 0.97006 1.21105 0.92058 0.82948 1.18694 1.43809 1.00976 1.03330 0.96982 1.94557 1.70434 1.21141 1.57125 1.94352 0.96713 1.93848 1.50780 0.88711 0.89973 0.87784 0.79315 0.82697 0.95630 0.97631 0.92385 0.85542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.68 71.23 0.62 -1.73 15 2 C -0.04 -0.92 5.88 -19.87 -0.12 -1.04 15 3 C -0.11 -2.43 9.67 22.27 0.22 -2.21 15 4 C -0.06 -1.84 9.70 22.27 0.22 -1.62 15 5 C -0.06 -2.50 5.07 -19.87 -0.10 -2.60 15 6 C 0.06 2.75 5.10 29.10 0.15 2.90 15 7 C -0.53 -28.78 9.09 25.60 0.23 -28.54 15 8 H 0.06 2.94 7.74 -2.91 -0.02 2.92 15 9 C 0.01 0.58 5.46 84.66 0.46 1.04 15 10 N -0.93 -53.39 13.29 21.45 0.28 -53.10 15 11 Si 0.96 42.77 29.54 68.60 2.03 44.79 15 12 H -0.27 -11.51 7.11 99.48 0.71 -10.80 15 13 H -0.27 -11.62 7.11 99.48 0.71 -10.92 15 14 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 15 C -0.07 -2.88 9.21 22.27 0.21 -2.67 15 16 C -0.06 -2.22 6.83 36.37 0.25 -1.97 15 17 N 0.04 1.34 4.45 -46.46 -0.21 1.13 15 18 O -0.24 -9.50 18.47 18.88 0.35 -9.15 15 19 O -0.13 -4.26 15.37 18.89 0.29 -3.97 15 20 H 0.09 1.62 8.14 -2.39 -0.02 1.61 15 21 H 0.08 1.79 5.87 -2.39 -0.01 1.78 15 22 H 0.10 1.28 8.03 -2.39 -0.02 1.27 15 23 H 0.19 2.50 8.05 -2.91 -0.02 2.48 15 24 H 0.16 4.17 8.06 -2.91 -0.02 4.15 15 25 H 0.03 1.29 8.09 -2.39 -0.02 1.27 15 26 H 0.01 0.29 8.09 -2.39 -0.02 0.27 15 27 H 0.27 14.47 8.31 -92.71 -0.77 13.70 15 28 H 0.13 5.36 7.63 -2.92 -0.02 5.34 15 Total: -1.00 -63.37 255.14 6.04 -57.33 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: 1.17 Total: 1.43 kcal Atomic # 6 Polarization: -40.59 SS G_CDS: 2.13 Total: -38.46 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.08 Total: -51.97 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.64 Total: -13.12 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -63.37 6.04 -57.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307443896.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.424 kcal (2) G-P(sol) polarization free energy of solvation -63.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds