Wall clock time and date at job start Mon Mar 30 2020 03:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99884 * 2 1 4 4 H 1.48497 * 109.47106 * 240.00480 * 3 2 1 5 5 H 1.48500 * 109.46997 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47235 * 120.00209 * 3 2 1 7 7 C 1.37878 * 120.00413 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00320 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99601 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.46684 * 180.02562 * 9 7 2 11 11 C 1.38623 * 119.81997 * 270.01801 * 10 9 7 12 12 C 1.37948 * 120.43697 * 179.97438 * 11 10 9 13 13 C 1.38965 * 120.06970 * 359.74458 * 12 11 10 14 14 N 1.38830 * 120.18226 * 180.27901 * 13 12 11 15 15 C 1.40403 * 119.63643 * 0.50826 * 13 12 11 16 16 C 1.47290 * 120.21273 * 179.76674 * 15 13 12 17 17 O 1.21524 * 120.00240 * 353.83365 * 16 15 13 18 18 O 1.34765 * 120.00016 * 173.82855 * 16 15 13 19 19 C 1.37721 * 119.81811 * 90.00275 * 10 9 7 20 20 H 0.97002 * 120.00572 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.47143 * 60.00387 * 9 7 2 22 22 H 1.09002 * 109.47045 * 299.99956 * 9 7 2 23 23 H 1.08000 * 119.78203 * 0.02562 * 11 10 9 24 24 H 1.08007 * 119.96697 * 180.02562 * 12 11 10 25 25 H 0.97001 * 120.00224 * 185.73535 * 14 13 12 26 26 H 0.97002 * 120.00048 * 5.73575 * 14 13 12 27 27 H 0.96706 * 117.00425 * 180.02562 * 18 16 15 28 28 H 1.07999 * 120.04319 * 0.04094 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2304 -3.6445 -0.0005 11 6 2.6787 -4.1682 -1.2032 12 6 3.5756 -5.2162 -1.2181 13 6 4.0407 -5.7516 -0.0230 14 7 4.9477 -6.8026 -0.0353 15 6 3.5845 -5.2271 1.1969 16 6 4.0652 -5.7884 2.4710 17 8 4.7701 -6.7783 2.4715 18 8 3.7233 -5.2041 3.6363 19 6 2.6754 -4.1650 1.1943 20 1 -0.4851 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.3241 -3.7524 -2.1347 24 1 3.9202 -5.6181 -2.1595 25 1 5.2071 -7.2292 0.7964 26 1 5.3222 -7.1103 -0.8755 27 1 4.0631 -5.6083 4.4464 28 1 2.3225 -3.7534 2.1283 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307453060.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:20 Heat of formation + Delta-G solvation = -75.924680 kcal Electronic energy + Delta-G solvation = -14294.769248 eV Core-core repulsion = 11696.009041 eV Total energy + Delta-G solvation = -2598.760207 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.27750 -38.39515 -36.10949 -34.57035 -32.75493 -30.88077 -29.94161 -26.29858 -24.09715 -22.96416 -21.84057 -19.90784 -17.87034 -16.88686 -16.41157 -16.28187 -16.07210 -15.40288 -14.56558 -13.93200 -13.60033 -13.11849 -12.87567 -12.81351 -12.18745 -11.59374 -11.41846 -11.28657 -11.05380 -10.63788 -10.50423 -10.17582 -10.10090 -9.49035 -9.21159 -8.56022 -8.39289 -7.00416 -6.00498 -4.05036 1.23794 2.16593 2.91137 3.32975 3.33864 3.38015 3.41406 4.20004 4.36162 4.52706 5.22866 5.33753 5.44179 5.67769 5.90662 6.06977 6.24029 6.46703 6.50933 6.67854 7.01739 7.12497 7.38252 7.58451 7.78471 7.84294 7.94616 8.05630 8.21747 8.36020 9.00297 9.58894 11.08261 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.035280 B = 0.007217 C = 0.006606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.467404 B = 3878.985290 C = 4237.802643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.056 0.944 9 C 0.055 3.945 10 C -0.108 4.108 11 C -0.028 4.028 12 C -0.220 4.220 13 C 0.262 3.738 14 N -0.868 5.868 15 C -0.227 4.227 16 C 0.543 3.457 17 O -0.547 6.547 18 O -0.506 6.506 19 C -0.019 4.019 20 H 0.262 0.738 21 H 0.028 0.972 22 H 0.028 0.972 23 H 0.126 0.874 24 H 0.121 0.879 25 H 0.411 0.589 26 H 0.390 0.610 27 H 0.407 0.593 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.849 -10.673 1.482 12.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.018 3.982 10 C -0.110 4.110 11 C -0.047 4.047 12 C -0.243 4.243 13 C 0.153 3.847 14 N -0.417 5.417 15 C -0.234 4.234 16 C 0.393 3.607 17 O -0.441 6.441 18 O -0.316 6.316 19 C -0.037 4.037 20 H 0.072 0.928 21 H 0.046 0.954 22 H 0.046 0.954 23 H 0.144 0.856 24 H 0.139 0.861 25 H 0.251 0.749 26 H 0.217 0.783 27 H 0.264 0.736 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.709 -10.619 1.203 12.619 hybrid contribution 0.977 0.452 0.469 1.174 sum 7.686 -10.167 1.672 12.855 Atomic orbital electron populations 1.69941 1.06014 1.26869 1.50565 1.25002 0.94845 0.99176 0.95245 0.86630 0.79555 0.82974 0.78709 1.20227 1.21308 1.20185 1.21095 0.93040 0.90082 1.50889 0.92544 1.18246 0.92314 0.89292 0.98331 1.20440 1.00691 0.98469 0.91364 1.21183 0.92657 0.92131 0.98704 1.20522 1.05436 1.02958 0.95370 1.17560 0.87902 0.86993 0.92231 1.43236 1.48276 1.37027 1.13116 1.18376 1.10964 1.06193 0.87821 1.20920 0.75738 0.79876 0.84190 1.90472 1.39085 1.27365 1.87162 1.84673 1.71966 1.58135 1.16840 1.21158 0.92230 0.91089 0.99251 0.92832 0.95392 0.95388 0.85647 0.86113 0.74898 0.78318 0.73588 0.84973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.29 55.43 0.74 -25.40 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 15 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 15 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.51 -14.11 9.09 -34.44 -0.31 -14.42 15 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 15 9 C 0.05 1.38 5.09 -29.03 -0.15 1.23 15 10 C -0.11 -2.27 5.06 -104.67 -0.53 -2.80 15 11 C -0.03 -0.51 9.67 -39.55 -0.38 -0.89 15 12 C -0.22 -3.52 9.88 -39.42 -0.39 -3.91 15 13 C 0.26 4.31 6.76 -83.61 -0.57 3.75 15 14 N -0.87 -11.91 8.93 32.55 0.29 -11.62 15 15 C -0.23 -4.05 5.89 -104.82 -0.62 -4.67 15 16 C 0.54 8.80 8.24 34.41 0.28 9.09 15 17 O -0.55 -9.05 14.44 -19.28 -0.28 -9.33 15 18 O -0.51 -6.87 12.70 -40.67 -0.52 -7.38 15 19 C -0.02 -0.36 9.25 -39.19 -0.36 -0.72 15 20 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 21 H 0.03 0.73 8.08 -51.93 -0.42 0.31 15 22 H 0.03 0.74 8.08 -51.93 -0.42 0.32 15 23 H 0.13 2.16 8.06 -52.49 -0.42 1.74 15 24 H 0.12 1.56 8.06 -52.48 -0.42 1.14 15 25 H 0.41 5.92 5.34 -40.93 -0.22 5.70 15 26 H 0.39 4.16 8.84 -40.82 -0.36 3.80 15 27 H 0.41 3.29 9.11 45.56 0.42 3.71 15 28 H 0.13 2.56 7.62 -52.49 -0.40 2.16 15 LS Contribution 253.87 15.07 3.83 3.83 Total: -1.00 -31.20 253.87 -5.88 -37.08 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -1.79 Total: 8.29 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -3.12 Total: -11.80 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 1.03 Total: -37.02 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.79 Total: -16.71 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.20 -5.88 -37.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307453060.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.845 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds