Wall clock time and date at job start Mon Mar 30 2020 03:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36501 * 120.14955 * 2 1 4 4 C 1.38802 * 120.29590 * 179.97438 * 3 2 1 5 5 N 1.48015 * 119.69945 * 180.02562 * 4 3 2 6 6 O 1.31702 * 119.99852 * 359.97438 * 5 4 3 7 7 O 1.31697 * 119.99848 * 179.97438 * 5 4 3 8 8 C 1.38792 * 120.59683 * 0.03931 * 4 3 2 9 9 C 1.36499 * 120.30331 * 0.02562 * 8 4 3 10 10 C 1.50698 * 120.15653 * 179.97438 * 9 8 4 11 11 C 1.41270 * 120.15490 * 179.73245 * 2 1 3 12 12 C 1.40345 * 120.29193 * 359.97087 * 11 2 1 13 13 H 1.08001 * 120.00303 * 127.38227 * 12 11 2 14 14 C 1.46545 * 120.00089 * 307.38846 * 12 11 2 15 15 N 1.29502 * 120.00263 * 164.90248 * 14 12 11 16 16 Si 1.86811 * 119.99826 * 344.90119 * 14 12 11 17 17 H 1.48496 * 109.47046 * 94.53975 * 16 14 12 18 18 H 1.48504 * 109.47060 * 214.53689 * 16 14 12 19 19 H 1.48493 * 109.47097 * 334.53691 * 16 14 12 20 20 H 1.08994 * 109.47190 * 90.00037 * 1 2 3 21 21 H 1.09002 * 109.47259 * 329.99298 * 1 2 3 22 22 H 1.09002 * 109.46849 * 210.00010 * 1 2 3 23 23 H 1.07999 * 119.85572 * 0.02562 * 3 2 1 24 24 H 1.08002 * 119.84497 * 179.97438 * 8 4 3 25 25 H 1.09007 * 109.46959 * 95.35842 * 10 9 8 26 26 H 1.08996 * 109.47201 * 215.35478 * 10 9 8 27 27 H 1.09003 * 109.47060 * 335.35699 * 10 9 8 28 28 H 0.97006 * 120.00066 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1927 1.1803 0.0000 4 6 3.5807 1.1839 0.0005 5 7 4.3107 2.4715 0.0011 6 8 3.6433 3.6069 0.0006 7 8 5.6277 2.4817 0.0021 8 6 4.2902 -0.0090 0.0003 9 6 3.6294 -1.2034 -0.0011 10 6 4.4030 -2.4966 -0.0020 11 6 2.2167 -1.2215 0.0057 12 6 1.5245 -2.4424 0.0120 13 1 1.7518 -3.1959 -0.7276 14 6 0.4932 -2.6947 1.0221 15 7 -0.3412 -3.6726 0.8653 16 14 0.3822 -1.6057 2.5359 17 1 -0.6058 -0.5235 2.2958 18 1 -0.0488 -2.4198 3.7008 19 1 1.7128 -1.0084 2.8146 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3634 0.8899 0.5139 22 1 -0.3633 -0.8900 0.5139 23 1 1.6527 2.1157 0.0004 24 1 5.3700 0.0079 0.0003 25 1 4.5068 -2.8586 1.0210 26 1 3.8706 -3.2381 -0.5974 27 1 5.3913 -2.3284 -0.4299 28 1 -1.0242 -3.8394 1.5337 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307535709.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:11 Heat of formation + Delta-G solvation = 27.591866 kcal Electronic energy + Delta-G solvation = -14770.010494 eV Core-core repulsion = 12175.739101 eV Total energy + Delta-G solvation = -2594.271393 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.18450 -37.28172 -34.40027 -33.33198 -32.78394 -31.78518 -27.95868 -26.57265 -26.21065 -23.68356 -20.51753 -20.00267 -18.43171 -16.89437 -16.86830 -16.03181 -14.77601 -14.71829 -14.16478 -13.57897 -13.40243 -12.84870 -12.79155 -12.43299 -12.19819 -11.93315 -11.61740 -11.01696 -10.76932 -10.70125 -10.32528 -10.26294 -10.13067 -9.88087 -9.82270 -9.67302 -8.17178 -8.14340 -7.69419 -5.13040 0.42274 2.16527 2.18672 2.53733 2.68779 2.76500 2.83080 3.43115 3.76184 4.46696 5.39985 5.45619 5.73197 5.83803 5.98596 6.04571 6.16511 6.21453 6.29038 6.35363 6.38068 6.45702 6.74703 6.77801 6.95881 7.13290 7.24954 7.35550 7.52136 7.83278 7.96687 8.08479 9.17787 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.034467 B = 0.010525 C = 0.009066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.174698 B = 2659.659331 C = 3087.783171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.172 4.172 3 C -0.026 4.026 4 C -0.115 4.115 5 N 0.035 4.965 6 O -0.284 6.284 7 O -0.283 6.283 8 C -0.031 4.031 9 C -0.160 4.160 10 C -0.087 4.087 11 C 0.105 3.895 12 C -0.394 4.394 13 H 0.113 0.887 14 C 0.080 3.920 15 N -0.740 5.740 16 Si 0.904 3.096 17 H -0.245 1.245 18 H -0.274 1.274 19 H -0.239 1.239 20 H 0.064 0.936 21 H 0.053 0.947 22 H 0.070 0.930 23 H 0.125 0.875 24 H 0.126 0.874 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 -2.840 1.606 3.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.175 4.175 3 C -0.046 4.046 4 C -0.212 4.212 5 N 0.474 4.526 6 O -0.450 6.450 7 O -0.449 6.449 8 C -0.051 4.051 9 C -0.162 4.162 10 C -0.144 4.144 11 C 0.101 3.899 12 C -0.419 4.419 13 H 0.130 0.870 14 C -0.150 4.150 15 N -0.360 5.360 16 Si 0.725 3.275 17 H -0.169 1.169 18 H -0.200 1.200 19 H -0.162 1.162 20 H 0.082 0.918 21 H 0.072 0.928 22 H 0.089 0.911 23 H 0.143 0.857 24 H 0.143 0.857 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.378 -3.318 1.640 4.399 hybrid contribution 0.052 0.749 0.564 0.939 sum -2.326 -2.568 2.205 4.107 Atomic orbital electron populations 1.20920 0.91546 1.01503 1.02125 1.19763 0.95526 0.91805 1.10412 1.20138 0.90883 0.98707 0.94867 1.19778 0.91190 0.80241 1.29963 1.50161 1.02368 1.04100 0.95985 1.96129 1.68092 1.18449 1.62322 1.96126 0.90155 1.96378 1.62259 1.20157 0.99680 0.89877 0.95357 1.19800 0.93459 0.93678 1.09290 1.20458 0.97830 0.94497 1.01624 1.17759 0.91133 0.92686 0.88328 1.20991 1.10196 1.00396 1.10302 0.86959 1.27804 0.91557 0.94704 1.00926 1.68970 1.09182 1.23639 1.34199 0.86605 0.82850 0.80290 0.77760 1.16899 1.19999 1.16181 0.91754 0.92802 0.91131 0.85680 0.85651 0.92211 0.91389 0.93109 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.90 7.90 36.01 0.28 -1.62 15 2 C -0.17 -3.55 4.75 -104.09 -0.49 -4.05 15 3 C -0.03 -0.56 9.15 -40.00 -0.37 -0.93 15 4 C -0.11 -2.62 6.91 -79.54 -0.55 -3.17 15 5 N 0.04 0.88 4.98 34.16 0.17 1.05 15 6 O -0.28 -7.20 19.13 -31.57 -0.60 -7.81 15 7 O -0.28 -7.15 19.13 -31.57 -0.60 -7.75 15 8 C -0.03 -0.65 9.13 -40.00 -0.37 -1.02 15 9 C -0.16 -3.21 5.92 -104.10 -0.62 -3.83 15 10 C -0.09 -1.46 9.53 36.00 0.34 -1.12 15 11 C 0.10 2.20 4.52 -106.80 -0.48 1.72 15 12 C -0.39 -8.24 8.23 -35.44 -0.29 -8.53 15 13 H 0.11 2.42 7.44 -52.49 -0.39 2.03 15 14 C 0.08 1.61 4.34 -15.19 -0.07 1.55 15 15 N -0.74 -15.01 13.89 55.99 0.78 -14.24 15 16 Si 0.90 16.62 24.39 -169.99 -4.15 12.47 15 17 H -0.24 -4.27 6.07 56.52 0.34 -3.92 15 18 H -0.27 -4.81 7.11 56.52 0.40 -4.41 15 19 H -0.24 -4.78 7.11 56.52 0.40 -4.38 15 20 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 21 H 0.05 0.89 8.04 -51.93 -0.42 0.47 15 22 H 0.07 1.31 2.83 -51.93 -0.15 1.17 15 23 H 0.13 2.53 7.56 -52.49 -0.40 2.13 15 24 H 0.13 2.49 7.55 -52.49 -0.40 2.09 15 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 26 H 0.07 1.11 6.97 -51.93 -0.36 0.75 15 27 H 0.05 0.75 8.04 -51.93 -0.42 0.33 15 28 H 0.30 5.45 8.27 -40.82 -0.34 5.11 15 LS Contribution 245.19 15.07 3.69 3.69 Total: -1.00 -25.13 245.19 -5.88 -31.01 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -2.56 Total: 2.56 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -2.61 Total: -20.99 kcal Atomic # 7 Polarization: -14.14 SS G_CDS: 0.95 Total: -13.19 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -1.21 Total: -15.56 kcal Atomic # 14 Polarization: 16.62 SS G_CDS: -4.15 Total: 12.47 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -25.13 -5.88 -31.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307535709.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.604 kcal (2) G-P(sol) polarization free energy of solvation -25.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds