Wall clock time and date at job start Mon Mar 30 2020 03:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.50698 * 109.46993 * 179.97438 * 9 7 2 11 11 C 1.37650 * 120.02972 * 265.00600 * 10 9 7 12 12 C 1.39857 * 119.80175 * 179.97438 * 11 10 9 13 13 C 1.47375 * 120.07443 * 179.97438 * 12 11 10 14 14 O 1.21518 * 119.99785 * 0.02562 * 13 12 11 15 15 O 1.34765 * 119.99899 * 179.97438 * 13 12 11 16 16 C 1.39856 * 119.85093 * 359.97438 * 12 11 10 17 17 C 1.36576 * 120.05161 * 359.97438 * 16 12 11 18 18 C 1.39235 * 120.20209 * 359.74857 * 17 16 12 19 19 N 1.39015 * 119.92885 * 180.25463 * 18 17 16 20 20 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 22 22 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 23 23 H 1.07997 * 120.09564 * 359.94691 * 11 10 9 24 24 H 0.96704 * 116.99189 * 180.02562 * 15 13 12 25 25 H 1.08003 * 119.97474 * 180.02562 * 16 12 11 26 26 H 1.08008 * 119.89598 * 180.02562 * 17 16 12 27 27 H 0.96999 * 119.99956 * 180.25435 * 19 18 17 28 28 H 0.97002 * 119.99626 * 0.25126 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2302 -3.6446 0.0028 11 6 2.5935 -4.2377 -1.1851 12 6 3.5031 -5.3001 -1.1819 13 6 3.8958 -5.9399 -2.4501 14 8 3.4296 -5.5441 -3.5002 15 8 4.7728 -6.9632 -2.4453 16 6 4.0391 -5.7540 0.0275 17 6 3.6753 -5.1604 1.2025 18 6 2.7743 -4.0988 1.2013 19 7 2.4119 -3.4953 2.4000 20 1 -0.4850 0.8401 0.0004 21 1 0.6281 -2.5552 0.8979 22 1 0.6206 -2.5586 -0.8820 23 1 2.1771 -3.8840 -2.1166 24 1 5.0001 -7.3504 -3.3018 25 1 4.7420 -6.5740 0.0322 26 1 4.0911 -5.5126 2.1350 27 1 1.7816 -2.7581 2.4008 28 1 2.7895 -3.8116 3.2357 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307631858.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:06 Heat of formation + Delta-G solvation = -104.112640 kcal Electronic energy + Delta-G solvation = -14314.315169 eV Core-core repulsion = 11714.332641 eV Total energy + Delta-G solvation = -2599.982529 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.27775 -40.00209 -36.94184 -35.69354 -35.12288 -33.01431 -30.30101 -28.90551 -25.31556 -24.84258 -22.71243 -21.44501 -18.91648 -18.50714 -18.12024 -17.61745 -17.53569 -16.50811 -16.49133 -15.12167 -14.93831 -14.61847 -14.38495 -14.21658 -13.73613 -13.50953 -13.07591 -12.75864 -12.51122 -12.46150 -12.23399 -11.58317 -11.56659 -11.52012 -11.32531 -10.58574 -9.68463 -8.43145 -8.12072 -6.30560 0.03658 0.66283 1.39984 1.42525 1.50142 1.75220 2.27520 2.40855 3.03859 3.12044 3.14662 4.00400 4.12759 4.39736 4.48692 4.67029 4.85409 5.15973 5.20357 5.39085 5.46505 5.48712 5.71150 5.75322 5.85238 5.98579 6.20340 6.59761 6.81128 7.07767 7.13172 7.38148 8.90090 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.031338 B = 0.007821 C = 0.006890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.274305 B = 3579.204771 C = 4062.846633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.958 3.042 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.051 0.949 9 C 0.069 3.931 10 C -0.165 4.165 11 C -0.026 4.026 12 C -0.221 4.221 13 C 0.539 3.461 14 O -0.570 6.570 15 O -0.501 6.501 16 C -0.012 4.012 17 C -0.213 4.213 18 C 0.257 3.743 19 N -0.848 5.848 20 H 0.265 0.735 21 H 0.016 0.984 22 H -0.007 1.007 23 H 0.103 0.897 24 H 0.428 0.572 25 H 0.163 0.837 26 H 0.162 0.838 27 H 0.405 0.595 28 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.138 -11.734 4.180 15.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.069 0.931 9 C 0.032 3.968 10 C -0.170 4.170 11 C -0.046 4.046 12 C -0.225 4.225 13 C 0.387 3.613 14 O -0.464 6.464 15 O -0.315 6.315 16 C -0.031 4.031 17 C -0.235 4.235 18 C 0.146 3.854 19 N -0.384 5.384 20 H 0.073 0.927 21 H 0.034 0.966 22 H 0.012 0.988 23 H 0.121 0.879 24 H 0.289 0.711 25 H 0.180 0.820 26 H 0.180 0.820 27 H 0.235 0.765 28 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 8.772 -11.354 4.313 14.982 hybrid contribution -0.103 1.147 -0.714 1.355 sum 8.669 -10.207 3.600 13.867 Atomic orbital electron populations 1.70061 1.07467 1.27855 1.51297 1.25817 0.95622 1.02661 0.94778 0.85602 0.78337 0.78733 0.78973 1.20225 1.20841 1.18871 1.21308 0.92822 0.91134 1.50727 0.93112 1.17854 0.92472 0.90500 0.95934 1.19818 1.04254 1.00730 0.92161 1.20768 0.93913 0.92670 0.97205 1.18742 1.08395 1.03479 0.91841 1.20850 0.74873 0.76810 0.88769 1.90848 1.55788 1.64584 1.35164 1.84511 1.58190 1.46349 1.42412 1.21027 0.95276 0.97124 0.89688 1.20598 1.03395 0.99273 1.00248 1.18106 0.90543 0.90344 0.86400 1.42616 1.50960 1.39260 1.05583 0.92659 0.96561 0.98847 0.87933 0.71052 0.81985 0.82046 0.76506 0.75844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.44 13.29 21.45 0.28 -54.15 15 2 C 0.01 0.54 5.46 84.66 0.46 1.01 15 3 Si 0.96 43.67 29.54 68.60 2.03 45.69 15 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 15 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 15 7 C -0.52 -28.80 9.08 25.60 0.23 -28.57 15 8 H 0.05 2.80 7.74 -2.92 -0.02 2.78 15 9 C 0.07 3.60 4.52 29.10 0.13 3.73 15 10 C -0.17 -7.15 5.08 -19.76 -0.10 -7.25 15 11 C -0.03 -1.10 9.22 22.52 0.21 -0.90 15 12 C -0.22 -7.73 5.88 -20.09 -0.12 -7.85 15 13 C 0.54 17.71 8.26 70.23 0.58 18.29 15 14 O -0.57 -22.96 17.12 19.78 0.34 -22.62 15 15 O -0.50 -11.08 12.67 -56.76 -0.72 -11.80 15 16 C -0.01 -0.34 9.56 22.27 0.21 -0.13 15 17 C -0.21 -5.74 9.82 22.12 0.22 -5.53 15 18 C 0.26 8.89 6.73 38.48 0.26 9.15 15 19 N -0.85 -25.41 8.96 -51.38 -0.46 -25.87 15 20 H 0.26 14.71 8.31 -92.71 -0.77 13.94 15 21 H 0.02 0.85 6.83 -2.39 -0.02 0.83 15 22 H -0.01 -0.40 8.05 -2.39 -0.02 -0.42 15 23 H 0.10 4.79 7.64 -2.91 -0.02 4.77 15 24 H 0.43 5.28 9.11 -74.05 -0.67 4.61 15 25 H 0.16 3.27 7.60 -2.91 -0.02 3.25 15 26 H 0.16 3.00 8.06 -2.91 -0.02 2.98 15 27 H 0.40 14.07 6.91 -92.71 -0.64 13.43 15 28 H 0.41 8.67 8.83 -92.71 -0.82 7.85 15 Total: -1.00 -69.87 255.59 2.65 -67.22 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -0.91 Total: 19.56 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 2.08 Total: -18.04 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -0.18 Total: -80.03 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.38 Total: -34.42 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -69.87 2.65 -67.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307631858.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.890 kcal (2) G-P(sol) polarization free energy of solvation -69.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds