Wall clock time and date at job start Mon Mar 30 2020 02:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40122 * 126.49191 * 2 1 4 4 N 1.28673 * 108.93294 * 179.81331 * 3 2 1 5 5 C 1.34843 * 109.63280 * 0.45722 * 4 3 2 6 6 C 1.41496 * 126.01756 * 179.71164 * 5 4 3 7 7 H 1.08000 * 119.99743 * 179.97438 * 6 5 4 8 8 C 1.39735 * 119.99953 * 359.97438 * 6 5 4 9 9 N 1.30976 * 120.00395 * 0.02562 * 8 6 5 10 10 Si 1.86809 * 119.99825 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46728 * 60.00160 * 10 8 6 12 12 H 1.48495 * 109.47278 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47127 * 300.00245 * 10 8 6 14 14 C 1.35013 * 126.48945 * 180.31724 * 2 1 3 15 15 C 1.50703 * 126.77622 * 359.97438 * 14 2 1 16 16 F 1.39897 * 109.47106 * 30.02448 * 15 14 2 17 17 F 1.39901 * 109.47487 * 150.02708 * 15 14 2 18 18 F 1.39906 * 109.46943 * 270.02505 * 15 14 2 19 19 H 1.08999 * 109.46892 * 269.68831 * 1 2 3 20 20 H 1.09000 * 109.46803 * 29.68004 * 1 2 3 21 21 H 1.09000 * 109.47214 * 149.68797 * 1 2 3 22 22 H 0.97001 * 120.00463 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2984 1.1265 0.0000 4 7 3.5251 0.7383 0.0040 5 6 3.5740 -0.6092 -0.0034 6 6 4.7478 -1.3993 -0.0078 7 1 4.6735 -2.4767 -0.0133 8 6 6.0031 -0.7854 -0.0049 9 7 6.0933 0.5212 0.0022 10 14 7.5529 -1.8285 -0.0100 11 1 7.5725 -2.6799 -1.2266 12 1 8.7453 -0.9435 -0.0065 13 1 7.5727 -2.6914 1.1984 14 6 2.2679 -1.0854 -0.0060 15 6 1.8340 -2.5286 -0.0135 16 9 0.6059 -2.6429 -0.6736 17 9 2.7937 -3.3008 -0.6768 18 9 1.6997 -2.9820 1.3033 19 1 -0.3633 -0.0056 1.0277 20 1 -0.3633 0.8929 -0.5089 21 1 -0.3633 -0.8872 -0.5187 22 1 6.9647 0.9473 0.0038 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307646392.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:59 Heat of formation + Delta-G solvation = -62.072479 kcal Electronic energy + Delta-G solvation = -15419.708615 eV Core-core repulsion = 12176.152001 eV Total energy + Delta-G solvation = -3243.556614 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.047 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.39078 -47.00047 -46.80408 -40.14425 -34.01495 -32.82081 -30.31004 -27.38824 -25.55474 -24.38127 -20.76709 -20.42004 -17.77097 -17.71647 -17.44765 -16.62679 -15.06506 -14.83104 -14.57683 -13.94472 -13.72550 -13.43314 -13.25048 -13.03109 -12.96408 -12.40899 -12.31416 -11.99572 -11.30398 -11.23329 -10.86022 -10.49544 -10.04910 -9.51073 -9.28685 -8.85347 -7.87634 -6.68276 -4.53953 2.32966 3.06900 3.09804 3.12348 3.21114 3.67508 3.95416 3.99401 4.76098 4.93939 5.09475 5.35176 5.39896 5.64205 5.84814 6.43984 6.76718 6.97010 7.18381 7.77328 8.17483 8.42411 8.74111 9.79629 10.26002 Molecular weight = 221.05amu Principal moments of inertia in cm(-1) A = 0.033878 B = 0.012680 C = 0.009808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.302599 B = 2207.675204 C = 2854.174645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.365 5.365 3 N -0.075 5.075 4 N -0.228 5.228 5 C 0.203 3.797 6 C -0.434 4.434 7 H 0.096 0.904 8 C 0.072 3.928 9 N -0.754 5.754 10 Si 0.917 3.083 11 H -0.263 1.263 12 H -0.277 1.277 13 H -0.263 1.263 14 C -0.254 4.254 15 C 0.567 3.433 16 F -0.196 7.196 17 F -0.167 7.167 18 F -0.188 7.188 19 H 0.064 0.936 20 H 0.082 0.918 21 H 0.086 0.914 22 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.801 -4.605 -0.166 7.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.166 5.166 3 N -0.053 5.053 4 N -0.104 5.104 5 C 0.076 3.924 6 C -0.468 4.468 7 H 0.114 0.886 8 C -0.151 4.151 9 N -0.378 5.378 10 Si 0.741 3.259 11 H -0.187 1.187 12 H -0.202 1.202 13 H -0.188 1.188 14 C -0.380 4.380 15 C 0.511 3.489 16 F -0.178 7.178 17 F -0.148 7.148 18 F -0.169 7.169 19 H 0.083 0.917 20 H 0.101 0.899 21 H 0.105 0.895 22 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.620 -2.927 -0.157 6.339 hybrid contribution 0.315 -1.709 0.017 1.738 sum -5.305 -4.636 -0.140 7.046 Atomic orbital electron populations 1.21872 0.76185 1.04251 1.02581 1.48988 1.06064 1.04462 1.57119 1.81417 0.96346 1.07977 1.19595 1.75241 1.07180 1.11343 1.16661 1.18890 0.90090 0.88296 0.95155 1.19012 0.88093 0.94410 1.45263 0.88621 1.25958 1.01027 0.95261 0.92851 1.69993 1.26733 1.09502 1.31532 0.86209 0.79466 0.80114 0.80077 1.18735 1.20200 1.18768 1.20665 0.93388 0.86413 1.37584 1.16865 0.73168 0.85720 0.73192 1.93025 1.46307 1.96691 1.81727 1.93153 1.63789 1.77030 1.80811 1.93173 1.95613 1.90824 1.37336 0.91703 0.89899 0.89537 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.53 11.25 59.85 0.67 2.20 14 2 N -0.36 -8.28 4.03 -62.90 -0.25 -8.53 14 3 N -0.07 -1.92 13.74 60.35 0.83 -1.09 14 4 N -0.23 -6.50 10.56 32.05 0.34 -6.17 14 5 C 0.20 5.60 6.70 -85.01 -0.57 5.03 14 6 C -0.43 -11.65 8.81 -37.78 -0.33 -11.99 14 7 H 0.10 2.43 6.13 -52.49 -0.32 2.11 14 8 C 0.07 1.84 5.49 -17.36 -0.10 1.75 14 9 N -0.75 -20.29 11.92 55.54 0.66 -19.63 14 10 Si 0.92 18.82 29.56 -169.99 -5.02 13.79 14 11 H -0.26 -5.30 7.11 56.52 0.40 -4.90 14 12 H -0.28 -5.51 7.11 56.52 0.40 -5.11 14 13 H -0.26 -5.30 7.11 56.52 0.40 -4.90 14 14 C -0.25 -6.19 6.55 -80.90 -0.53 -6.72 14 15 C 0.57 11.99 3.40 36.01 0.12 12.11 14 16 F -0.20 -3.63 14.69 2.25 0.03 -3.59 14 17 F -0.17 -3.58 15.01 2.25 0.03 -3.54 14 18 F -0.19 -3.86 17.30 2.25 0.04 -3.82 14 19 H 0.06 0.93 8.14 -51.93 -0.42 0.51 14 20 H 0.08 1.16 8.14 -51.93 -0.42 0.73 14 21 H 0.09 1.29 5.70 -51.93 -0.30 0.99 14 22 H 0.28 6.84 8.30 -40.82 -0.34 6.50 14 LS Contribution 216.76 15.07 3.27 3.27 Total: -1.00 -29.59 216.76 -1.41 -31.00 By element: Atomic # 1 Polarization: -3.47 SS G_CDS: -0.60 Total: -4.07 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -0.73 Total: 2.39 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 1.58 Total: -35.42 kcal Atomic # 9 Polarization: -11.06 SS G_CDS: 0.11 Total: -10.96 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -29.59 -1.41 -31.00 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307646392.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.077 kcal (2) G-P(sol) polarization free energy of solvation -29.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds