Wall clock time and date at job start Mon Mar 30 2020 02:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40122 * 126.49191 * 2 1 4 4 N 1.28673 * 108.93294 * 179.81331 * 3 2 1 5 5 C 1.34843 * 109.63280 * 0.45722 * 4 3 2 6 6 C 1.41496 * 126.01756 * 179.71164 * 5 4 3 7 7 H 1.08000 * 119.99743 * 179.97438 * 6 5 4 8 8 C 1.39735 * 119.99953 * 359.97438 * 6 5 4 9 9 N 1.30976 * 120.00395 * 0.02562 * 8 6 5 10 10 Si 1.86809 * 119.99825 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46728 * 60.00160 * 10 8 6 12 12 H 1.48495 * 109.47278 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47127 * 300.00245 * 10 8 6 14 14 C 1.35013 * 126.48945 * 180.31724 * 2 1 3 15 15 C 1.50703 * 126.77622 * 359.97438 * 14 2 1 16 16 F 1.39897 * 109.47106 * 30.02448 * 15 14 2 17 17 F 1.39901 * 109.47487 * 150.02708 * 15 14 2 18 18 F 1.39906 * 109.46943 * 270.02505 * 15 14 2 19 19 H 1.08999 * 109.46892 * 269.68831 * 1 2 3 20 20 H 1.09000 * 109.46803 * 29.68004 * 1 2 3 21 21 H 1.09000 * 109.47214 * 149.68797 * 1 2 3 22 22 H 0.97001 * 120.00463 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2984 1.1265 0.0000 4 7 3.5251 0.7383 0.0040 5 6 3.5740 -0.6092 -0.0034 6 6 4.7478 -1.3993 -0.0078 7 1 4.6735 -2.4767 -0.0133 8 6 6.0031 -0.7854 -0.0049 9 7 6.0933 0.5212 0.0022 10 14 7.5529 -1.8285 -0.0100 11 1 7.5725 -2.6799 -1.2266 12 1 8.7453 -0.9435 -0.0065 13 1 7.5727 -2.6914 1.1984 14 6 2.2679 -1.0854 -0.0060 15 6 1.8340 -2.5286 -0.0135 16 9 0.6059 -2.6429 -0.6736 17 9 2.7937 -3.3008 -0.6768 18 9 1.6997 -2.9820 1.3033 19 1 -0.3633 -0.0056 1.0277 20 1 -0.3633 0.8929 -0.5089 21 1 -0.3633 -0.8872 -0.5187 22 1 6.9647 0.9473 0.0038 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307646392.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:59 Heat of formation + Delta-G solvation = -82.359067 kcal Electronic energy + Delta-G solvation = -15420.588307 eV Core-core repulsion = 12176.152001 eV Total energy + Delta-G solvation = -3244.436307 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.047 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -51.07386 -48.64271 -48.51337 -42.06420 -35.86472 -34.64118 -32.21039 -29.11889 -27.27910 -26.24541 -22.66931 -22.23642 -19.53054 -19.45132 -19.15586 -18.45962 -16.87320 -16.54767 -16.35415 -15.57039 -15.39291 -15.08968 -14.90896 -14.71592 -14.68099 -14.03465 -13.94831 -13.64029 -13.03446 -12.87209 -12.66902 -12.22615 -11.85048 -11.30651 -11.20923 -10.71566 -9.82130 -8.54433 -6.52176 0.44448 1.42734 1.43520 1.46213 1.57891 1.99208 2.07470 2.26056 2.97485 3.21955 3.24727 3.59047 3.97099 4.38714 4.51129 4.61185 4.84611 5.12268 5.29055 6.02006 6.19595 6.49242 6.80681 7.85930 8.42703 Molecular weight = 221.05amu Principal moments of inertia in cm(-1) A = 0.033878 B = 0.012680 C = 0.009808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.302599 B = 2207.675204 C = 2854.174645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.347 5.347 3 N -0.097 5.097 4 N -0.276 5.276 5 C 0.167 3.833 6 C -0.468 4.468 7 H 0.102 0.898 8 C 0.027 3.973 9 N -0.797 5.797 10 Si 0.992 3.008 11 H -0.256 1.256 12 H -0.269 1.269 13 H -0.256 1.256 14 C -0.247 4.247 15 C 0.578 3.422 16 F -0.175 7.175 17 F -0.167 7.167 18 F -0.181 7.181 19 H 0.091 0.909 20 H 0.108 0.892 21 H 0.105 0.895 22 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.579 -5.935 -0.164 8.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.148 5.148 3 N -0.075 5.075 4 N -0.150 5.150 5 C 0.038 3.962 6 C -0.502 4.502 7 H 0.120 0.880 8 C -0.191 4.191 9 N -0.422 5.422 10 Si 0.812 3.188 11 H -0.180 1.180 12 H -0.193 1.193 13 H -0.180 1.180 14 C -0.377 4.377 15 C 0.521 3.479 16 F -0.157 7.157 17 F -0.148 7.148 18 F -0.162 7.162 19 H 0.110 0.890 20 H 0.127 0.873 21 H 0.123 0.877 22 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.457 -4.223 -0.155 7.717 hybrid contribution 0.290 -1.310 0.018 1.342 sum -6.167 -5.533 -0.137 8.286 Atomic orbital electron populations 1.22438 0.72286 1.06497 1.05015 1.49516 1.08270 1.03412 1.53630 1.81298 0.96239 1.08845 1.21101 1.75197 1.08435 1.12197 1.19159 1.19418 0.91809 0.88578 0.96393 1.19353 0.88983 0.94808 1.47038 0.87977 1.26926 1.04132 0.96380 0.91704 1.70099 1.27817 1.11405 1.32874 0.85096 0.75034 0.78295 0.80383 1.17965 1.19309 1.17972 1.21166 0.93085 0.88348 1.35055 1.16449 0.73791 0.84082 0.73547 1.93064 1.44782 1.96501 1.81315 1.93154 1.64092 1.76744 1.80858 1.93185 1.95602 1.90511 1.36911 0.89031 0.87345 0.87719 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.26 11.25 127.77 1.44 3.70 14 2 N -0.35 -15.22 4.03 -352.92 -1.42 -16.64 14 3 N -0.10 -4.99 13.74 37.02 0.51 -4.48 14 4 N -0.28 -16.09 10.56 -52.51 -0.55 -16.64 14 5 C 0.17 9.32 6.70 39.67 0.27 9.59 14 6 C -0.47 -25.38 8.81 23.44 0.21 -25.18 14 7 H 0.10 5.18 6.13 -2.91 -0.02 5.16 14 8 C 0.03 1.41 5.49 85.18 0.47 1.88 14 9 N -0.80 -43.99 11.92 21.79 0.26 -43.73 14 10 Si 0.99 38.46 29.56 68.60 2.03 40.49 14 11 H -0.26 -9.50 7.11 99.48 0.71 -8.80 14 12 H -0.27 -9.91 7.11 99.48 0.71 -9.20 14 13 H -0.26 -9.50 7.11 99.48 0.71 -8.79 14 14 C -0.25 -11.77 6.55 42.26 0.28 -11.49 14 15 C 0.58 23.16 3.40 71.24 0.24 23.40 14 16 F -0.18 -5.90 14.69 44.97 0.66 -5.24 14 17 F -0.17 -6.90 15.01 44.97 0.68 -6.23 14 18 F -0.18 -6.98 17.30 44.97 0.78 -6.20 14 19 H 0.09 2.27 8.14 -2.39 -0.02 2.25 14 20 H 0.11 2.65 8.14 -2.39 -0.02 2.63 14 21 H 0.10 2.70 5.70 -2.39 -0.01 2.68 14 22 H 0.29 14.27 8.30 -92.71 -0.77 13.50 14 Total: -1.00 -64.43 216.76 7.11 -57.32 By element: Atomic # 1 Polarization: -1.84 SS G_CDS: 1.28 Total: -0.56 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 2.90 Total: 1.90 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -1.21 Total: -81.49 kcal Atomic # 9 Polarization: -19.78 SS G_CDS: 2.11 Total: -17.67 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -64.43 7.11 -57.32 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307646392.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.034 kcal (2) G-P(sol) polarization free energy of solvation -64.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds