Wall clock time and date at job start Mon Mar 30 2020 03:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99694 * 2 1 4 4 H 1.48496 * 109.47086 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46896 * 299.99717 * 3 2 1 6 6 H 1.48496 * 109.47096 * 59.99575 * 3 2 1 7 7 C 1.37874 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00213 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99750 * 0.02562 * 7 2 1 10 10 O 1.45208 * 109.47109 * 179.97438 * 9 7 2 11 11 C 1.34754 * 116.99790 * 180.02562 * 10 9 7 12 12 O 1.21520 * 120.00680 * 0.02562 * 11 10 9 13 13 C 1.47389 * 119.99587 * 180.02562 * 11 10 9 14 14 C 1.39857 * 120.07006 * 180.02562 * 13 11 10 15 15 C 1.37107 * 119.92133 * 180.02562 * 14 13 11 16 16 C 1.39240 * 120.07830 * 359.97438 * 15 14 13 17 17 N 1.39003 * 119.92801 * 179.97438 * 16 15 14 18 18 C 1.39247 * 120.14338 * 0.27439 * 16 15 14 19 19 C 1.37110 * 120.07123 * 359.44873 * 18 16 15 20 20 H 0.97003 * 120.00128 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47155 * 60.00211 * 9 7 2 22 22 H 1.08996 * 109.47602 * 299.99877 * 9 7 2 23 23 H 1.07996 * 120.03814 * 0.02562 * 14 13 11 24 24 H 1.08004 * 119.96446 * 179.97438 * 15 14 13 25 25 H 0.97001 * 120.00330 * 0.02562 * 17 16 15 26 26 H 0.97005 * 119.99944 * 179.72463 * 17 16 15 27 27 H 1.08001 * 119.95996 * 179.72828 * 18 16 15 28 28 H 1.07999 * 120.03106 * 180.27545 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 2.1948 -3.6027 0.0005 11 6 1.6797 -4.8480 0.0000 12 8 0.4750 -5.0073 -0.0009 13 6 2.5776 -6.0168 0.0005 14 6 2.0447 -7.3098 -0.0006 15 6 2.8828 -8.3949 0.0005 16 6 4.2630 -8.2107 0.0021 17 7 5.1097 -9.3131 0.0037 18 6 4.7968 -6.9247 0.0084 19 6 3.9643 -5.8352 0.0016 20 1 -0.4850 0.8401 -0.0004 21 1 0.6249 -2.5570 -0.8897 22 1 0.6242 -2.5567 0.8902 23 1 0.9743 -7.4534 -0.0022 24 1 2.4720 -9.3938 0.0000 25 1 4.7391 -10.2095 0.0033 26 1 6.0714 -9.1859 0.0007 27 1 5.8677 -6.7852 0.0141 28 1 4.3790 -4.8381 0.0021 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308662041.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:09 Heat of formation + Delta-G solvation = -71.228634 kcal Electronic energy + Delta-G solvation = -13938.637569 eV Core-core repulsion = 11340.080998 eV Total energy + Delta-G solvation = -2598.556571 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.79425 -38.55415 -35.43519 -34.51080 -32.81456 -30.96957 -29.24367 -27.53424 -23.73044 -22.69654 -22.21611 -20.05971 -17.60233 -17.10946 -16.84636 -16.13683 -15.69648 -15.17747 -14.55493 -14.13969 -13.88216 -13.35150 -13.28778 -12.87538 -12.20899 -12.12249 -11.48720 -11.00125 -10.96874 -10.89777 -10.60654 -10.25533 -9.61389 -9.57342 -9.25110 -8.97944 -8.46901 -7.64237 -6.17090 -4.21937 1.18228 1.53477 3.21568 3.26802 3.32550 3.38027 3.64353 3.82006 4.15720 4.38562 4.89323 4.98288 5.19012 5.44724 5.51740 5.65922 5.78703 6.13156 6.23896 6.44821 6.68151 6.78702 7.00313 7.29196 7.31126 7.50227 7.55420 7.87423 8.10130 8.71261 8.94649 9.42448 10.93784 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.056397 B = 0.005499 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.357999 B = 5090.383294 C = 5571.596283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.914 3.086 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.526 4.526 8 H 0.072 0.928 9 C 0.205 3.795 10 O -0.356 6.356 11 C 0.498 3.502 12 O -0.528 6.528 13 C -0.175 4.175 14 C -0.010 4.010 15 C -0.215 4.215 16 C 0.238 3.762 17 N -0.872 5.872 18 C -0.215 4.215 19 C -0.011 4.011 20 H 0.266 0.734 21 H 0.029 0.971 22 H 0.029 0.971 23 H 0.135 0.865 24 H 0.125 0.875 25 H 0.398 0.602 26 H 0.399 0.601 27 H 0.125 0.875 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.161 -16.345 0.001 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.144 4.144 3 Si 0.740 3.260 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.564 4.564 8 H 0.090 0.910 9 C 0.134 3.866 10 O -0.272 6.272 11 C 0.344 3.656 12 O -0.421 6.421 13 C -0.179 4.179 14 C -0.029 4.029 15 C -0.237 4.237 16 C 0.132 3.868 17 N -0.409 5.409 18 C -0.237 4.237 19 C -0.030 4.030 20 H 0.076 0.924 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.153 0.847 24 H 0.143 0.857 25 H 0.226 0.774 26 H 0.227 0.773 27 H 0.143 0.857 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.628 -16.175 0.004 18.824 hybrid contribution 0.385 0.602 -0.008 0.714 sum 10.013 -15.573 -0.004 18.514 Atomic orbital electron populations 1.69997 1.06136 1.27416 1.49407 1.24969 0.95041 0.99523 0.94848 0.86191 0.79882 0.82149 0.77728 1.19364 1.20713 1.20705 1.21048 0.94267 0.88755 1.52328 0.91009 1.20917 0.87605 0.80093 0.98016 1.86487 1.43824 1.14755 1.82147 1.20993 0.86884 0.84489 0.73251 1.90762 1.16511 1.87422 1.47363 1.19142 0.93158 0.91716 1.13839 1.20886 1.00372 0.90331 0.91309 1.20336 0.91119 0.99124 1.13156 1.18013 0.90303 0.87755 0.90725 1.42416 1.08228 1.06219 1.84080 1.20436 0.99917 0.90631 1.12736 1.21195 0.91978 0.99469 0.90376 0.92393 0.95336 0.95322 0.84734 0.85746 0.77360 0.77296 0.85710 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.29 55.43 0.74 -26.22 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 3 Si 0.91 21.61 29.54 -169.99 -5.02 16.58 15 4 H -0.27 -6.19 7.11 56.52 0.40 -5.78 15 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.53 -15.41 9.44 -34.44 -0.33 -15.73 15 8 H 0.07 2.03 7.81 -52.49 -0.41 1.62 15 9 C 0.20 5.89 5.23 36.00 0.19 6.07 15 10 O -0.36 -8.95 9.44 -40.64 -0.38 -9.33 15 11 C 0.50 11.33 7.89 34.46 0.27 11.60 15 12 O -0.53 -13.32 16.13 -19.28 -0.31 -13.63 15 13 C -0.18 -3.11 5.88 -104.97 -0.62 -3.72 15 14 C -0.01 -0.15 9.56 -39.39 -0.38 -0.53 15 15 C -0.21 -2.54 9.85 -39.62 -0.39 -2.93 15 16 C 0.24 2.60 6.75 -83.86 -0.57 2.03 15 17 N -0.87 -6.03 9.05 32.41 0.29 -5.73 15 18 C -0.21 -2.58 9.85 -39.62 -0.39 -2.97 15 19 C -0.01 -0.17 9.58 -39.39 -0.38 -0.55 15 20 H 0.27 7.47 8.31 -40.82 -0.34 7.13 15 21 H 0.03 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.03 0.87 8.14 -51.93 -0.42 0.45 15 23 H 0.13 1.99 7.64 -52.49 -0.40 1.59 15 24 H 0.12 1.13 8.06 -52.48 -0.42 0.71 15 25 H 0.40 1.98 8.83 -40.82 -0.36 1.62 15 26 H 0.40 2.03 8.83 -40.82 -0.36 1.67 15 27 H 0.12 1.18 8.06 -52.49 -0.42 0.76 15 28 H 0.14 2.14 7.60 -52.49 -0.40 1.74 15 LS Contribution 259.67 15.07 3.91 3.91 Total: -1.00 -33.65 259.67 -6.21 -39.86 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -2.76 Total: -0.30 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -2.68 Total: -5.14 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 1.03 Total: -31.96 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.69 Total: -22.96 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.65 -6.21 -39.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308662041.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.369 kcal (2) G-P(sol) polarization free energy of solvation -33.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds