Wall clock time and date at job start Mon Mar 30 2020 02:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99739 * 180.02562 * 7 2 1 10 10 O 1.42099 * 106.39960 * 293.53526 * 9 7 2 11 11 O 1.42100 * 106.40650 * 66.45676 * 9 7 2 12 12 N 1.65599 * 107.21634 * 180.02562 * 9 7 2 13 13 C 1.46507 * 120.00180 * 64.99553 * 12 9 7 14 14 H 1.08998 * 115.54740 * 0.66735 * 13 12 9 15 15 C 1.52998 * 117.49820 * 146.38183 * 13 12 9 16 16 C 1.52999 * 60.00224 * 107.49029 * 15 13 12 17 17 H 1.09007 * 117.51622 * 252.51987 * 16 15 13 18 18 C 1.52996 * 117.50143 * 107.48787 * 16 15 13 19 19 O 1.42907 * 109.46963 * 116.37785 * 18 16 15 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 0.96997 * 120.00002 * 244.99903 * 12 9 7 22 22 H 1.09004 * 117.49494 * 214.98011 * 15 13 12 23 23 H 1.09003 * 117.49931 * 359.97438 * 15 13 12 24 24 H 1.08999 * 109.47178 * 236.38230 * 18 16 15 25 25 H 1.09006 * 109.46804 * 356.38193 * 18 16 15 26 26 H 0.96694 * 113.99713 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 16 3.7665 -1.1941 0.0001 10 8 4.1682 -0.6489 -1.2491 11 8 4.1674 -0.6504 1.2503 12 7 4.2567 -2.7759 -0.0014 13 6 3.9618 -3.6331 -1.1524 14 1 3.4266 -3.1526 -1.9714 15 6 4.9878 -4.7092 -1.5131 16 6 3.6547 -5.1062 -0.8758 17 1 3.6718 -5.4376 0.1626 18 6 2.6205 -5.7923 -1.7704 19 8 2.3819 -7.1178 -1.2926 20 1 -0.4850 0.8401 0.0004 21 1 4.7391 -3.1349 0.7597 22 1 5.1280 -4.9368 -2.5698 23 1 5.8825 -4.7791 -0.8943 24 1 1.6896 -5.2257 -1.7502 25 1 2.9967 -5.8368 -2.7925 26 1 1.7353 -7.6132 -1.8137 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393323100.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:32 Heat of formation + Delta-G solvation = -108.295738 kcal Electronic energy + Delta-G solvation = -13421.454786 eV Core-core repulsion = 10820.901721 eV Total energy + Delta-G solvation = -2600.553064 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 221.055 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.22435 -36.05453 -35.61085 -34.46154 -33.05327 -31.72679 -26.48222 -26.42066 -21.77980 -20.57199 -19.19470 -17.61490 -17.36905 -16.69836 -15.73041 -15.25956 -14.66533 -14.33309 -13.82453 -13.41542 -12.89699 -12.81346 -12.32832 -11.64170 -11.57048 -11.38209 -11.00167 -10.84863 -10.66143 -10.55190 -10.44476 -9.88207 -9.56947 -9.22100 -9.10472 -8.41469 -6.81772 -5.36079 2.00906 3.06486 3.17255 3.26233 3.90396 3.94927 4.12163 4.41645 4.57759 4.98274 5.11245 5.22498 5.38126 5.43188 5.55560 5.73699 5.82829 5.94567 6.19759 6.34416 6.68785 7.46108 7.64433 7.66353 8.20523 8.69000 10.30474 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.039716 B = 0.009735 C = 0.008454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.842729 B = 2875.506509 C = 3311.186046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.153 3.847 3 Si 0.801 3.199 4 H -0.247 1.247 5 H -0.219 1.219 6 H -0.255 1.255 7 C -1.015 5.015 8 H 0.123 0.877 9 S 2.676 3.324 10 O -1.006 7.006 11 O -1.009 7.009 12 N -1.093 6.093 13 C 0.120 3.880 14 H 0.140 0.860 15 C -0.189 4.189 16 C -0.170 4.170 17 H 0.114 0.886 18 C 0.106 3.894 19 O -0.574 6.574 20 H 0.281 0.719 21 H 0.407 0.593 22 H 0.100 0.900 23 H 0.096 0.904 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.598 -8.813 -3.884 10.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.067 4.067 3 Si 0.621 3.379 4 H -0.170 1.170 5 H -0.141 1.141 6 H -0.179 1.179 7 C -1.150 5.150 8 H 0.141 0.859 9 S 2.778 3.222 10 O -0.996 6.996 11 O -0.999 6.999 12 N -0.844 5.844 13 C 0.010 3.990 14 H 0.158 0.842 15 C -0.228 4.228 16 C -0.191 4.191 17 H 0.132 0.868 18 C 0.028 3.972 19 O -0.380 6.380 20 H 0.091 0.909 21 H 0.238 0.762 22 H 0.119 0.881 23 H 0.115 0.885 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 5.367 -7.689 -3.590 10.041 hybrid contribution -0.706 0.040 -0.002 0.707 sum 4.661 -7.649 -3.592 9.651 Atomic orbital electron populations 1.69990 1.06591 1.29058 1.39533 1.24435 0.94798 0.98819 0.88607 0.87868 0.83649 0.84502 0.81860 1.17045 1.14075 1.17872 1.30465 1.15482 1.02245 1.66794 0.85946 1.01383 0.77369 0.70155 0.73315 1.93470 1.85041 1.75720 1.45362 1.93427 1.85591 1.75717 1.45192 1.55186 1.72721 1.30971 1.25516 1.21263 1.01028 0.85958 0.90736 0.84216 1.23602 0.93691 1.03932 1.01595 1.22712 0.96897 0.98402 1.01082 0.86824 1.21722 0.97571 0.82684 0.95241 1.86465 1.65792 1.27091 1.58604 0.90888 0.76168 0.88144 0.88513 0.92427 0.93358 0.77627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.58 13.96 55.43 0.77 -22.81 15 2 C 0.15 4.36 5.47 -17.82 -0.10 4.26 15 3 Si 0.80 20.43 26.54 -169.99 -4.51 15.92 15 4 H -0.25 -6.18 7.11 56.52 0.40 -5.77 15 5 H -0.22 -5.65 5.60 56.52 0.32 -5.34 15 6 H -0.25 -5.95 7.11 56.52 0.40 -5.55 15 7 C -1.02 -28.00 10.26 30.60 0.31 -27.69 15 8 H 0.12 3.41 8.06 -52.49 -0.42 2.98 15 9 S 2.68 66.04 4.22 -107.50 -0.45 65.59 15 10 O -1.01 -26.53 15.76 -57.17 -0.90 -27.43 15 11 O -1.01 -26.84 16.84 -57.17 -0.96 -27.81 15 12 N -1.09 -20.86 6.04 -4.89 -0.03 -20.89 15 13 C 0.12 2.01 6.19 -67.93 -0.42 1.59 15 14 H 0.14 2.38 8.09 -51.93 -0.42 1.96 15 15 C -0.19 -2.52 10.10 -26.73 -0.27 -2.79 15 16 C -0.17 -2.48 5.98 -90.62 -0.54 -3.02 15 17 H 0.11 1.72 8.14 -51.92 -0.42 1.29 15 18 C 0.11 1.35 7.33 37.16 0.27 1.62 15 19 O -0.57 -7.19 13.66 -35.23 -0.48 -7.67 15 20 H 0.28 7.30 8.31 -40.82 -0.34 6.96 15 21 H 0.41 6.67 8.96 -34.47 -0.31 6.36 15 22 H 0.10 1.15 8.03 -51.93 -0.42 0.73 15 23 H 0.10 1.20 8.14 -51.93 -0.42 0.78 15 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 25 H 0.05 0.52 7.88 -51.93 -0.41 0.11 15 26 H 0.38 2.82 9.12 45.56 0.42 3.23 15 LS Contribution 245.03 15.07 3.69 3.69 Total: -1.00 -33.68 245.03 -5.67 -39.35 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -2.05 Total: 8.07 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: -0.74 Total: -26.02 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.74 Total: -43.69 kcal Atomic # 8 Polarization: -60.56 SS G_CDS: -2.34 Total: -62.91 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.51 Total: 15.92 kcal Atomic # 16 Polarization: 66.04 SS G_CDS: -0.45 Total: 65.59 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -33.68 -5.67 -39.35 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393323100.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.947 kcal (2) G-P(sol) polarization free energy of solvation -33.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds