Wall clock time and date at job start Mon Mar 30 2020 02:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00078 * 2 1 4 4 H 1.48496 * 109.47311 * 274.78689 * 3 2 1 5 5 H 1.48501 * 109.47283 * 34.78840 * 3 2 1 6 6 H 1.48504 * 109.47173 * 154.78672 * 3 2 1 7 7 C 1.38756 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00136 * 170.19441 * 7 2 1 9 9 N 1.36968 * 119.99985 * 350.18789 * 7 2 1 10 10 C 1.37913 * 126.19091 * 342.06670 * 9 7 2 11 11 C 1.33226 * 108.49977 * 179.97438 * 10 9 7 12 12 N 1.38428 * 108.67055 * 0.02562 * 11 10 9 13 13 N 1.40042 * 144.25789 * 180.02562 * 12 11 10 14 14 C 1.32305 * 108.34977 * 179.97438 * 13 12 11 15 15 C 1.47485 * 125.92233 * 179.97438 * 14 13 12 16 16 O 1.21507 * 120.00198 * 180.02562 * 15 14 13 17 17 O 1.34753 * 119.99965 * 359.75545 * 15 14 13 18 18 C 1.40738 * 108.15971 * 0.24801 * 14 13 12 19 19 C 1.36201 * 107.76181 * 359.59533 * 18 14 13 20 20 H 0.97001 * 120.00201 * 359.97438 * 1 2 3 21 21 H 1.08004 * 125.75220 * 359.96477 * 10 9 7 22 22 H 1.07998 * 125.66696 * 180.02562 * 11 10 9 23 23 H 0.96696 * 117.00215 * 180.27708 * 17 15 14 24 24 H 1.07997 * 126.11513 * 179.75527 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3955 2.1048 -1.3951 5 1 1.5009 2.6213 0.7988 6 1 3.5937 1.4130 0.5964 7 6 2.0089 -1.2017 -0.0005 8 1 3.0771 -1.2085 -0.1598 9 7 1.3391 -2.3792 0.2011 10 6 0.0811 -2.5170 0.7491 11 6 -0.2272 -3.8128 0.7797 12 7 0.8305 -4.5325 0.2509 13 7 1.2879 -5.8195 -0.0582 14 6 2.4964 -5.7163 -0.5867 15 6 3.3361 -6.8362 -1.0513 16 8 4.4351 -6.6174 -1.5212 17 8 2.8868 -8.1025 -0.9498 18 6 2.8444 -4.3531 -0.6228 19 6 1.8018 -3.6443 -0.1075 20 1 -0.4850 0.8400 0.0004 21 1 -0.5482 -1.7104 1.0954 22 1 -1.1490 -4.2321 1.1547 23 1 3.4743 -8.8034 -1.2638 24 1 3.7712 -3.9424 -0.9952 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409437718.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:45 Heat of formation + Delta-G solvation = 26.429007 kcal Electronic energy + Delta-G solvation = -14234.135841 eV Core-core repulsion = 11536.273680 eV Total energy + Delta-G solvation = -2697.862161 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.54815 -41.10168 -38.92501 -37.11482 -35.55320 -33.27689 -30.46135 -29.73307 -27.00340 -25.77231 -22.53372 -22.04187 -21.53537 -19.35646 -19.02178 -17.72964 -17.37919 -17.06807 -16.56960 -16.34981 -15.72691 -15.19068 -14.56554 -14.10940 -13.95656 -13.73818 -13.48397 -12.89499 -12.70283 -12.55120 -12.11396 -12.00044 -11.74182 -11.60410 -10.86662 -9.77128 -8.82226 -8.51217 -6.36491 0.11688 1.20334 1.26534 1.42915 1.47968 1.57174 1.64136 1.89393 2.21552 2.25055 2.75721 2.86252 3.56776 4.29995 4.37434 4.62813 4.84903 4.94771 5.00995 5.16767 5.21684 5.42487 5.67243 5.86723 6.40755 6.62262 6.93997 7.04587 7.19158 8.31165 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.047258 B = 0.007735 C = 0.006714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.347669 B = 3618.918037 C = 4169.564234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.011 3.989 3 Si 1.019 2.981 4 H -0.268 1.268 5 H -0.263 1.263 6 H -0.260 1.260 7 C -0.361 4.361 8 H 0.113 0.887 9 N -0.293 5.293 10 C 0.057 3.943 11 C -0.087 4.087 12 N -0.289 5.289 13 N -0.313 5.313 14 C 0.035 3.965 15 C 0.592 3.408 16 O -0.527 6.527 17 O -0.492 6.492 18 C -0.276 4.276 19 C 0.175 3.825 20 H 0.293 0.707 21 H 0.211 0.789 22 H 0.209 0.791 23 H 0.437 0.563 24 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.973 -2.590 0.990 2.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.196 4.196 3 Si 0.838 3.162 4 H -0.193 1.193 5 H -0.187 1.187 6 H -0.184 1.184 7 C -0.488 4.488 8 H 0.131 0.869 9 N 0.036 4.964 10 C -0.080 4.080 11 C -0.216 4.216 12 N -0.062 5.062 13 N -0.148 5.148 14 C -0.116 4.116 15 C 0.434 3.566 16 O -0.416 6.416 17 O -0.305 6.305 18 C -0.313 4.313 19 C -0.054 4.054 20 H 0.104 0.896 21 H 0.227 0.773 22 H 0.226 0.774 23 H 0.299 0.701 24 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.068 -2.877 1.267 3.145 hybrid contribution 1.112 0.790 -0.552 1.471 sum 1.179 -2.088 0.715 2.502 Atomic orbital electron populations 1.69842 1.07364 1.30896 1.42139 1.26468 0.96757 1.03250 0.93091 0.84540 0.78190 0.74358 0.79078 1.19305 1.18681 1.18370 1.20193 0.94397 0.81300 1.52917 0.86945 1.40318 1.13170 1.02331 1.40566 1.22793 0.88044 0.96157 1.00969 1.21837 0.95671 0.87575 1.16549 1.47324 1.13166 1.04539 1.41193 1.77874 1.13024 0.94142 1.29757 1.20550 0.94147 0.91966 1.04969 1.18882 0.82344 0.81789 0.73587 1.90864 1.21370 1.85778 1.43570 1.84629 1.51983 1.15854 1.78042 1.19365 1.01325 0.89691 1.20959 1.19756 0.94586 0.83891 1.07187 0.89611 0.77301 0.77394 0.70087 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -39.88 10.77 21.63 0.23 -39.64 14 2 C 0.01 0.52 5.38 84.86 0.46 0.97 14 3 Si 1.02 35.07 29.56 68.60 2.03 37.10 14 4 H -0.27 -9.13 7.11 99.48 0.71 -8.42 14 5 H -0.26 -8.52 7.11 99.48 0.71 -7.81 14 6 H -0.26 -8.81 7.11 99.48 0.71 -8.10 14 7 C -0.36 -17.81 10.11 84.01 0.85 -16.96 14 8 H 0.11 5.40 7.85 -2.91 -0.02 5.38 14 9 N -0.29 -14.73 2.96 -349.21 -1.03 -15.77 14 10 C 0.06 2.57 10.05 82.61 0.83 3.40 14 11 C -0.09 -3.68 11.90 82.52 0.98 -2.70 14 12 N -0.29 -13.92 4.73 -192.17 -0.91 -14.83 14 13 N -0.31 -14.77 12.74 -48.58 -0.62 -15.38 14 14 C 0.04 1.58 7.10 42.12 0.30 1.88 14 15 C 0.59 22.12 8.34 70.26 0.59 22.70 14 16 O -0.53 -20.89 17.68 19.81 0.35 -20.54 14 17 O -0.49 -13.93 13.43 -56.64 -0.76 -14.69 14 18 C -0.28 -13.27 10.60 22.41 0.24 -13.04 14 19 C 0.18 8.86 8.02 131.41 1.05 9.91 14 20 H 0.29 12.17 8.31 -92.71 -0.77 11.40 14 21 H 0.21 9.00 6.28 -2.91 -0.02 8.98 14 22 H 0.21 6.82 8.06 -2.91 -0.02 6.80 14 23 H 0.44 6.52 9.11 -74.06 -0.67 5.84 14 24 H 0.15 6.72 8.06 -2.91 -0.02 6.69 14 Total: -1.00 -62.00 232.35 5.17 -56.83 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.59 Total: 20.76 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 5.29 Total: 6.16 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -2.33 Total: -85.62 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -0.41 Total: -35.23 kcal Atomic # 14 Polarization: 35.07 SS G_CDS: 2.03 Total: 37.10 kcal Total: -62.00 5.17 -56.83 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409437718.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.263 kcal (2) G-P(sol) polarization free energy of solvation -62.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds