Wall clock time and date at job start Mon Mar 30 2020 02:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99656 * 2 1 4 4 H 1.48502 * 109.46974 * 240.00000 * 3 2 1 5 5 H 1.48495 * 109.47103 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46839 * 120.00201 * 3 2 1 7 7 C 1.38810 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00007 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99930 * 0.02562 * 7 2 1 10 10 C 1.47024 * 125.64618 * 179.71580 * 9 7 2 11 11 C 1.54327 * 107.26774 * 179.20447 * 10 9 7 12 12 H 1.08996 * 110.72159 * 96.17410 * 11 10 9 13 13 C 1.50703 * 110.71802 * 219.44222 * 11 10 9 14 14 O 1.20822 * 119.99941 * 113.52408 * 13 11 10 15 15 O 1.34226 * 120.00116 * 293.52166 * 13 11 10 16 16 C 1.55155 * 102.94571 * 337.80617 * 11 10 9 17 17 F 1.39900 * 111.00510 * 277.42866 * 16 11 10 18 18 F 1.39896 * 111.00600 * 153.57625 * 16 11 10 19 19 C 1.47426 * 125.64875 * 0.02562 * 9 7 2 20 20 H 0.97004 * 120.00482 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.88316 * 298.61939 * 10 9 7 22 22 H 1.09002 * 109.88101 * 59.78834 * 10 9 7 23 23 H 0.96704 * 117.00014 * 179.97438 * 15 13 11 24 24 H 1.09002 * 110.36518 * 322.70049 * 19 9 7 25 25 H 1.08997 * 110.36787 * 85.02427 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 1.9319 -3.7274 -0.0082 11 6 0.7785 -4.7525 0.0136 12 1 0.5463 -5.0933 -0.9954 13 6 1.1178 -5.9181 0.9066 14 8 0.4920 -6.1022 1.9235 15 8 2.1153 -6.7517 0.5721 16 6 -0.4018 -3.9354 0.6023 17 9 -0.3385 -3.8983 1.9993 18 9 -1.6303 -4.4472 0.1714 19 6 -0.1415 -2.5332 -0.0028 20 1 -0.4851 0.8400 -0.0004 21 1 2.5285 -3.8598 -0.9107 22 1 2.5581 -3.8552 0.8748 23 1 2.2961 -7.4847 1.1764 24 1 -0.5995 -1.7619 0.6164 25 1 -0.5270 -2.4819 -1.0210 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575460474.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:25 Heat of formation + Delta-G solvation = -181.263700 kcal Electronic energy + Delta-G solvation = -15810.819177 eV Core-core repulsion = 12653.261597 eV Total energy + Delta-G solvation = -3157.557579 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.065 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.84974 -48.03390 -41.39030 -38.64441 -37.18169 -34.59322 -31.53414 -29.81506 -26.90733 -24.40347 -22.70388 -21.76610 -19.41735 -19.12646 -18.68084 -17.93330 -17.16204 -16.93159 -16.48344 -16.27278 -15.40486 -15.22200 -14.83839 -14.37110 -14.35310 -14.03941 -13.67763 -13.21923 -12.87406 -12.77561 -12.65770 -12.52331 -12.15040 -11.99684 -11.80283 -11.44047 -10.84385 -9.09555 -7.88534 -5.35246 1.00239 1.51505 1.54555 1.60976 1.78240 2.30521 2.55739 2.89798 3.22311 3.28139 3.53062 3.72644 4.03967 4.16745 4.26461 4.72826 4.84718 5.11277 5.36001 5.47233 5.51141 6.07567 6.88073 6.93218 7.59400 8.17138 9.16546 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.044440 B = 0.009660 C = 0.008619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.910879 B = 2897.817195 C = 3247.718029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.062 4.062 3 Si 0.990 3.010 4 H -0.271 1.271 5 H -0.295 1.295 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.098 0.902 9 N -0.617 5.617 10 C 0.151 3.849 11 C -0.128 4.128 12 H 0.170 0.830 13 C 0.503 3.497 14 O -0.533 6.533 15 O -0.493 6.493 16 C 0.268 3.732 17 F -0.193 7.193 18 F -0.194 7.194 19 C 0.132 3.868 20 H 0.254 0.746 21 H 0.080 0.920 22 H 0.039 0.961 23 H 0.433 0.567 24 H 0.098 0.902 25 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 -10.243 -1.714 11.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.255 4.255 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.116 0.884 9 N -0.344 5.344 10 C 0.026 3.974 11 C -0.147 4.147 12 H 0.187 0.813 13 C 0.345 3.655 14 O -0.422 6.422 15 O -0.307 6.307 16 C 0.230 3.770 17 F -0.174 7.174 18 F -0.175 7.175 19 C 0.005 3.995 20 H 0.063 0.937 21 H 0.098 0.902 22 H 0.057 0.943 23 H 0.296 0.704 24 H 0.116 0.884 25 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.399 -9.780 -1.674 10.489 hybrid contribution -0.031 0.309 0.638 0.710 sum 3.369 -9.472 -1.036 10.106 Atomic orbital electron populations 1.69869 1.06486 1.25968 1.57806 1.25730 0.96637 1.01455 1.01635 0.84986 0.77013 0.77917 0.78387 1.19693 1.22147 1.20354 1.19484 0.91494 0.82422 1.43814 0.88428 1.44466 1.00933 1.01397 1.87629 1.21341 0.92288 0.82183 1.01547 1.23115 0.96725 0.92427 1.02479 0.81268 1.22541 0.76982 0.82257 0.83756 1.90788 1.51736 1.72874 1.26807 1.84468 1.49639 1.41077 1.55542 1.22455 0.80502 0.97695 0.76380 1.92988 1.96297 1.97261 1.30810 1.92941 1.46676 1.88592 1.89309 1.22599 0.87012 0.90059 0.99851 0.93675 0.90222 0.94319 0.70430 0.88425 0.93514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.54 10.09 21.65 0.22 -54.32 15 2 C -0.06 -3.32 5.49 84.86 0.47 -2.86 15 3 Si 0.99 43.38 29.55 68.60 2.03 45.41 15 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 5 H -0.30 -13.17 7.11 99.48 0.71 -12.46 15 6 H -0.28 -11.84 7.11 99.48 0.71 -11.13 15 7 C -0.24 -12.81 10.27 84.03 0.86 -11.95 15 8 H 0.10 4.75 7.83 -2.91 -0.02 4.73 15 9 N -0.62 -29.94 3.39 -691.97 -2.35 -32.29 15 10 C 0.15 5.63 6.83 86.73 0.59 6.22 15 11 C -0.13 -4.25 3.22 -10.35 -0.03 -4.28 15 12 H 0.17 4.45 8.14 -2.39 -0.02 4.43 15 13 C 0.50 15.47 7.39 71.24 0.53 15.99 15 14 O -0.53 -20.25 15.38 21.98 0.34 -19.91 15 15 O -0.49 -10.32 13.42 -51.38 -0.69 -11.01 15 16 C 0.27 11.23 2.16 31.99 0.07 11.30 15 17 F -0.19 -9.11 15.05 44.97 0.68 -8.43 15 18 F -0.19 -7.81 17.24 44.97 0.78 -7.03 15 19 C 0.13 6.36 5.50 86.86 0.48 6.84 15 20 H 0.25 14.15 8.31 -92.70 -0.77 13.38 15 21 H 0.08 2.59 8.14 -2.39 -0.02 2.57 15 22 H 0.04 1.46 7.81 -2.39 -0.02 1.44 15 23 H 0.43 4.76 9.10 -74.05 -0.67 4.09 15 24 H 0.10 5.48 5.89 -2.39 -0.01 5.47 15 25 H 0.05 2.27 8.14 -2.39 -0.02 2.25 15 Total: -1.00 -66.68 229.68 4.52 -62.16 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: 0.56 Total: 4.17 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: 2.96 Total: 21.26 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -2.13 Total: -86.61 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.35 Total: -30.92 kcal Atomic # 9 Polarization: -16.91 SS G_CDS: 1.45 Total: -15.46 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -66.68 4.52 -62.16 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575460474.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.108 kcal (2) G-P(sol) polarization free energy of solvation -66.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds