Wall clock time and date at job start Mon Mar 30 2020 02:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35730 * 116.99682 * 2 1 4 4 C 1.38647 * 119.44164 * 0.02562 * 3 2 1 5 5 C 1.39332 * 119.87980 * 179.97438 * 4 3 2 6 6 C 1.43195 * 120.58219 * 180.02562 * 5 4 3 7 7 N 5.84123 * 80.93062 * 0.02562 * 2 1 3 8 8 C 1.46622 * 118.83971 * 359.97438 * 5 4 3 9 9 C 1.40613 * 120.54148 * 180.02562 * 8 5 4 10 10 H 1.07995 * 119.99875 * 335.08061 * 9 8 5 11 11 C 1.40200 * 119.99783 * 155.07447 * 9 8 5 12 12 N 1.30700 * 120.00307 * 342.51012 * 11 9 8 13 13 Si 1.86807 * 119.99867 * 162.50751 * 11 9 8 14 14 H 1.48497 * 109.47154 * 90.00223 * 13 11 9 15 15 H 1.48501 * 109.47150 * 210.00045 * 13 11 9 16 16 H 1.48501 * 109.46999 * 330.00133 * 13 11 9 17 17 C 1.40868 * 118.92078 * 359.97438 * 8 5 4 18 18 C 1.36417 * 120.01714 * 359.74172 * 17 8 5 19 19 F 1.35105 * 119.39374 * 180.27128 * 18 17 8 20 20 H 1.09000 * 109.47053 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46927 * 59.99935 * 1 2 3 22 22 H 1.09002 * 109.46862 * 300.00321 * 1 2 3 23 23 H 1.08002 * 120.06457 * 359.95657 * 4 3 2 24 24 H 0.97008 * 120.00124 * 179.97438 * 12 11 9 25 25 H 1.08000 * 119.99295 * 180.02562 * 17 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.2787 2.3647 0.0005 5 6 1.9017 3.6110 0.0011 6 6 1.1247 4.8139 0.0022 7 7 0.5083 5.7682 0.0026 8 6 3.3667 3.6694 0.0016 9 6 4.0325 4.9079 0.0027 10 1 3.5412 5.7854 -0.3909 11 6 5.3341 5.0036 0.5150 12 7 5.8028 4.0605 1.2890 13 14 6.3984 6.4791 0.0912 14 1 6.1890 7.5471 1.1015 15 1 7.8272 6.0742 0.0879 16 1 6.0253 6.9889 -1.2527 17 6 4.0965 2.4645 0.0022 18 6 3.4397 1.2688 0.0075 19 9 4.1522 0.1209 0.0135 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 0.2007 2.2989 0.0002 24 1 6.7035 4.1265 1.6431 25 1 5.1763 2.4873 0.0030 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575646470.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:42 Heat of formation + Delta-G solvation = -44.355853 kcal Electronic energy + Delta-G solvation = -14158.494410 eV Core-core repulsion = 11437.642825 eV Total energy + Delta-G solvation = -2720.851585 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.81719 -38.78553 -36.78121 -35.10425 -33.74404 -29.80931 -29.67113 -27.13351 -25.30989 -22.27092 -21.31754 -18.32392 -17.82831 -16.34657 -15.83739 -15.49768 -15.22430 -14.69011 -14.19703 -13.59018 -13.35371 -12.93719 -12.72997 -12.62004 -12.05641 -11.70646 -11.62458 -11.22556 -11.21065 -10.89018 -10.84086 -10.42643 -10.13895 -9.99136 -9.39396 -7.89571 -7.40963 -7.16165 -4.77274 1.89127 2.45242 2.88330 2.90525 2.97722 3.63333 3.78910 3.92487 4.10774 4.34275 5.17603 5.23792 5.31152 5.56291 5.60996 5.78115 5.89689 6.35426 6.55536 6.66117 6.85193 7.00787 7.10784 7.37824 7.66275 7.97569 8.16661 8.29739 8.44101 8.70496 9.65775 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.029086 B = 0.010365 C = 0.007818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.422150 B = 2700.628795 C = 3580.631232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.323 6.323 3 C -0.049 4.049 4 C -0.082 4.082 5 C -0.174 4.174 6 C 0.301 3.699 7 N -0.503 5.503 8 C 0.151 3.849 9 C -0.421 4.421 10 H 0.091 0.909 11 C 0.074 3.926 12 N -0.760 5.760 13 Si 0.918 3.082 14 H -0.264 1.264 15 H -0.269 1.269 16 H -0.254 1.254 17 C -0.173 4.173 18 C 0.127 3.873 19 F -0.153 7.153 20 H 0.086 0.914 21 H 0.045 0.955 22 H 0.045 0.955 23 H 0.115 0.885 24 H 0.294 0.706 25 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.763 -3.748 -1.343 4.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.239 6.239 3 C -0.094 4.094 4 C -0.104 4.104 5 C -0.180 4.180 6 C -0.008 4.008 7 N -0.182 5.182 8 C 0.145 3.855 9 C -0.448 4.448 10 H 0.109 0.891 11 C -0.150 4.150 12 N -0.382 5.382 13 Si 0.741 3.259 14 H -0.189 1.189 15 H -0.194 1.194 16 H -0.178 1.178 17 C -0.194 4.194 18 C 0.107 3.893 19 F -0.132 7.132 20 H 0.104 0.896 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.133 0.867 24 H 0.105 0.895 25 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.393 -2.576 -1.185 3.159 hybrid contribution 0.608 0.152 -0.004 0.627 sum -0.785 -2.424 -1.189 2.812 Atomic orbital electron populations 1.22798 0.80426 1.02317 1.00550 1.85923 1.19528 1.26996 1.91448 1.18100 0.90136 0.84176 1.16938 1.20436 0.97725 0.90437 1.01784 1.16576 0.91178 0.85789 1.24451 1.25568 0.91533 0.92409 0.91314 1.81042 1.11320 1.10937 1.14945 1.18119 0.87790 0.92754 0.86854 1.19698 0.97729 0.95650 1.31763 0.89147 1.26163 0.98147 0.98400 0.92252 1.69714 1.17667 1.31888 1.18901 0.86106 0.78535 0.80432 0.80850 1.18854 1.19395 1.17790 1.20894 1.00985 0.89017 1.08457 1.16785 0.85875 0.81896 1.04761 1.91382 1.78386 1.49127 1.94287 0.89554 0.93624 0.93613 0.86702 0.89487 0.83791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.79 101.05 0.99 1.49 15 2 O -0.32 -6.33 10.30 -18.90 -0.19 -6.52 15 3 C -0.05 -1.05 6.70 -38.93 -0.26 -1.31 15 4 C -0.08 -1.69 8.73 -39.02 -0.34 -2.03 15 5 C -0.17 -3.92 5.94 -104.19 -0.62 -4.54 15 6 C 0.30 6.89 14.30 -22.47 -0.32 6.57 15 7 N -0.50 -11.78 18.54 41.84 0.78 -11.00 15 8 C 0.15 3.60 5.73 -104.63 -0.60 3.00 15 9 C -0.42 -10.02 8.56 -37.95 -0.32 -10.35 15 10 H 0.09 2.15 7.38 -52.49 -0.39 1.76 15 11 C 0.07 1.64 5.15 -17.30 -0.09 1.55 15 12 N -0.76 -17.18 10.97 55.56 0.61 -16.57 15 13 Si 0.92 16.72 29.60 -169.99 -5.03 11.69 15 14 H -0.26 -4.83 7.11 56.52 0.40 -4.43 15 15 H -0.27 -4.71 7.11 56.52 0.40 -4.31 15 16 H -0.25 -4.66 7.11 56.52 0.40 -4.26 15 17 C -0.17 -4.06 8.59 -39.24 -0.34 -4.40 15 18 C 0.13 2.89 7.22 -39.74 -0.29 2.60 15 19 F -0.15 -3.43 17.04 2.25 0.04 -3.39 15 20 H 0.09 0.98 8.14 -51.93 -0.42 0.56 15 21 H 0.05 0.60 7.63 -51.93 -0.40 0.21 15 22 H 0.05 0.62 7.63 -51.93 -0.40 0.22 15 23 H 0.12 2.04 6.21 -52.49 -0.33 1.71 15 24 H 0.29 5.93 8.29 -40.82 -0.34 5.59 15 25 H 0.14 3.41 6.19 -52.49 -0.32 3.08 15 LS Contribution 239.97 15.07 3.62 3.62 Total: -1.00 -25.70 239.97 -3.76 -29.46 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -1.39 Total: 0.13 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -2.19 Total: -7.42 kcal Atomic # 7 Polarization: -28.95 SS G_CDS: 1.39 Total: -27.57 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.19 Total: -6.52 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.04 Total: -3.39 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -5.03 Total: 11.69 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -25.70 -3.76 -29.46 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646470.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.898 kcal (2) G-P(sol) polarization free energy of solvation -25.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds