Wall clock time and date at job start Mon Mar 30 2020 02:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35730 * 116.99682 * 2 1 4 4 C 1.38647 * 119.44164 * 0.02562 * 3 2 1 5 5 C 1.39332 * 119.87980 * 179.97438 * 4 3 2 6 6 C 1.43195 * 120.58219 * 180.02562 * 5 4 3 7 7 N 5.84123 * 80.93062 * 0.02562 * 2 1 3 8 8 C 1.46622 * 118.83971 * 359.97438 * 5 4 3 9 9 C 1.40613 * 120.54148 * 180.02562 * 8 5 4 10 10 H 1.07995 * 119.99875 * 335.08061 * 9 8 5 11 11 C 1.40200 * 119.99783 * 155.07447 * 9 8 5 12 12 N 1.30700 * 120.00307 * 342.51012 * 11 9 8 13 13 Si 1.86807 * 119.99867 * 162.50751 * 11 9 8 14 14 H 1.48497 * 109.47154 * 90.00223 * 13 11 9 15 15 H 1.48501 * 109.47150 * 210.00045 * 13 11 9 16 16 H 1.48501 * 109.46999 * 330.00133 * 13 11 9 17 17 C 1.40868 * 118.92078 * 359.97438 * 8 5 4 18 18 C 1.36417 * 120.01714 * 359.74172 * 17 8 5 19 19 F 1.35105 * 119.39374 * 180.27128 * 18 17 8 20 20 H 1.09000 * 109.47053 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46927 * 59.99935 * 1 2 3 22 22 H 1.09002 * 109.46862 * 300.00321 * 1 2 3 23 23 H 1.08002 * 120.06457 * 359.95657 * 4 3 2 24 24 H 0.97008 * 120.00124 * 179.97438 * 12 11 9 25 25 H 1.08000 * 119.99295 * 180.02562 * 17 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.2787 2.3647 0.0005 5 6 1.9017 3.6110 0.0011 6 6 1.1247 4.8139 0.0022 7 7 0.5083 5.7682 0.0026 8 6 3.3667 3.6694 0.0016 9 6 4.0325 4.9079 0.0027 10 1 3.5412 5.7854 -0.3909 11 6 5.3341 5.0036 0.5150 12 7 5.8028 4.0605 1.2890 13 14 6.3984 6.4791 0.0912 14 1 6.1890 7.5471 1.1015 15 1 7.8272 6.0742 0.0879 16 1 6.0253 6.9889 -1.2527 17 6 4.0965 2.4645 0.0022 18 6 3.4397 1.2688 0.0075 19 9 4.1522 0.1209 0.0135 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 0.2007 2.2989 0.0002 24 1 6.7035 4.1265 1.6431 25 1 5.1763 2.4873 0.0030 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575646470.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:42 Heat of formation + Delta-G solvation = -57.983079 kcal Electronic energy + Delta-G solvation = -14159.085331 eV Core-core repulsion = 11437.642825 eV Total energy + Delta-G solvation = -2721.442506 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.59563 -40.37473 -38.43707 -36.90767 -35.43173 -31.53909 -31.37403 -28.49214 -26.94415 -24.00194 -22.99927 -19.99362 -19.53106 -18.07264 -17.50218 -17.10447 -16.76980 -16.29862 -15.77024 -15.14629 -14.93282 -14.59522 -14.50943 -14.36126 -13.74775 -13.45728 -13.17122 -12.75842 -12.70150 -12.45126 -12.34856 -12.00281 -11.78526 -11.59413 -11.02930 -9.62944 -9.11902 -8.84891 -6.54166 0.11843 0.78108 1.38587 1.46343 1.54103 1.97530 2.12277 2.17953 2.59556 2.69206 3.40663 3.47499 3.62025 4.15361 4.45760 4.53896 4.65939 4.81503 4.85284 4.99203 5.14871 5.27870 5.37226 5.62672 5.90522 6.22104 6.46385 6.55727 6.80173 6.90405 8.02439 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.029086 B = 0.010365 C = 0.007818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.422150 B = 2700.628795 C = 3580.631232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.340 6.340 3 C -0.043 4.043 4 C -0.072 4.072 5 C -0.185 4.185 6 C 0.308 3.692 7 N -0.516 5.516 8 C 0.131 3.869 9 C -0.448 4.448 10 H 0.082 0.918 11 C 0.043 3.957 12 N -0.784 5.784 13 Si 0.983 3.017 14 H -0.263 1.263 15 H -0.255 1.255 16 H -0.257 1.257 17 C -0.184 4.184 18 C 0.115 3.885 19 F -0.154 7.154 20 H 0.118 0.882 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.147 0.853 24 H 0.304 0.696 25 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.219 -3.905 -1.426 4.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.256 6.256 3 C -0.088 4.088 4 C -0.094 4.094 5 C -0.191 4.191 6 C -0.001 4.001 7 N -0.196 5.196 8 C 0.125 3.875 9 C -0.475 4.475 10 H 0.100 0.900 11 C -0.179 4.179 12 N -0.406 5.406 13 Si 0.802 3.198 14 H -0.187 1.187 15 H -0.178 1.178 16 H -0.181 1.181 17 C -0.204 4.204 18 C 0.095 3.905 19 F -0.133 7.133 20 H 0.136 0.864 21 H 0.076 0.924 22 H 0.074 0.926 23 H 0.164 0.836 24 H 0.116 0.884 25 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.867 -2.758 -1.264 3.562 hybrid contribution 0.661 0.083 0.040 0.667 sum -1.206 -2.675 -1.224 3.180 Atomic orbital electron populations 1.23199 0.77467 1.04938 1.01564 1.85913 1.22550 1.25890 1.91215 1.18131 0.89768 0.85260 1.15672 1.20668 0.99224 0.89223 1.00245 1.16713 0.90846 0.86507 1.25063 1.25600 0.91231 0.92313 0.90947 1.81035 1.11879 1.11073 1.15568 1.18357 0.88639 0.93060 0.87438 1.19845 0.99128 0.95440 1.33084 0.89955 1.26880 0.98545 1.00893 0.91575 1.69717 1.18557 1.33252 1.19117 0.85159 0.77434 0.77017 0.80156 1.18747 1.17849 1.18093 1.20789 1.00625 0.89381 1.09633 1.16977 0.86857 0.81657 1.05035 1.91369 1.78568 1.49059 1.94317 0.86362 0.92387 0.92636 0.83591 0.88396 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.79 113.37 1.11 1.68 15 2 O -0.34 -12.54 10.30 -90.53 -0.93 -13.47 15 3 C -0.04 -1.80 6.70 22.69 0.15 -1.64 15 4 C -0.07 -2.85 8.73 22.63 0.20 -2.65 15 5 C -0.18 -8.26 5.94 -19.58 -0.12 -8.37 15 6 C 0.31 13.88 14.30 88.33 1.26 15.14 15 7 N -0.52 -23.74 18.54 19.00 0.35 -23.39 15 8 C 0.13 6.31 5.73 -19.87 -0.11 6.19 15 9 C -0.45 -21.56 8.56 23.33 0.20 -21.36 15 10 H 0.08 3.98 7.38 -2.91 -0.02 3.96 15 11 C 0.04 1.88 5.15 85.34 0.44 2.32 15 12 N -0.78 -35.52 10.97 21.87 0.24 -35.28 15 13 Si 0.98 33.77 29.60 68.60 2.03 35.80 15 14 H -0.26 -8.94 7.11 99.48 0.71 -8.24 15 15 H -0.25 -8.09 7.11 99.48 0.71 -7.38 15 16 H -0.26 -8.88 7.11 99.48 0.71 -8.17 15 17 C -0.18 -8.73 8.59 22.49 0.19 -8.54 15 18 C 0.12 5.21 7.22 22.17 0.16 5.37 15 19 F -0.15 -6.88 17.04 44.97 0.77 -6.12 15 20 H 0.12 2.22 8.14 -2.39 -0.02 2.20 15 21 H 0.06 1.33 7.63 -2.39 -0.02 1.31 15 22 H 0.06 1.30 7.63 -2.39 -0.02 1.28 15 23 H 0.15 4.74 6.21 -2.91 -0.02 4.72 15 24 H 0.30 12.18 8.29 -92.70 -0.77 11.41 15 25 H 0.14 6.53 6.19 -2.91 -0.02 6.51 15 Total: -1.00 -53.88 239.97 7.18 -46.70 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: 1.24 Total: 7.62 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 3.49 Total: -11.85 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 0.59 Total: -58.67 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.93 Total: -13.47 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.77 Total: -6.12 kcal Atomic # 14 Polarization: 33.77 SS G_CDS: 2.03 Total: 35.80 kcal Total: -53.88 7.18 -46.70 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646470.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.287 kcal (2) G-P(sol) polarization free energy of solvation -53.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds