Wall clock time and date at job start Mon Mar 30 2020 02:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35689 * 116.99439 * 2 1 4 4 C 1.37926 * 120.16067 * 359.97438 * 3 2 1 5 5 C 1.39917 * 119.92445 * 180.02562 * 4 3 2 6 6 C 1.43192 * 119.88084 * 180.02562 * 5 4 3 7 7 N 5.83607 * 81.26373 * 0.02562 * 2 1 3 8 8 C 1.40529 * 120.23381 * 359.97438 * 5 4 3 9 9 F 1.35104 * 119.83576 * 179.97438 * 8 5 4 10 10 C 1.36284 * 120.32475 * 0.02562 * 8 5 4 11 11 C 1.40895 * 120.07163 * 359.72382 * 10 8 5 12 12 C 1.40745 * 120.11838 * 180.27674 * 11 10 8 13 13 H 1.08000 * 119.99594 * 205.13906 * 12 11 10 14 14 C 1.40189 * 120.00356 * 25.14909 * 12 11 10 15 15 N 1.30710 * 119.99874 * 17.62391 * 14 12 11 16 16 Si 1.86796 * 120.00111 * 197.63170 * 14 12 11 17 17 H 1.48499 * 109.47326 * 89.99535 * 16 14 12 18 18 H 1.48499 * 109.47008 * 209.99702 * 16 14 12 19 19 H 1.48496 * 109.47036 * 329.99396 * 16 14 12 20 20 H 1.09002 * 109.46851 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46801 * 60.00652 * 1 2 3 22 22 H 1.08992 * 109.47558 * 300.00118 * 1 2 3 23 23 H 1.08000 * 120.04152 * 359.97438 * 4 3 2 24 24 H 1.08005 * 119.96286 * 179.97438 * 10 8 5 25 25 H 0.96999 * 119.99845 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2091 0.0000 4 6 1.2969 2.3678 -0.0005 5 6 1.9371 3.6119 -0.0011 6 6 1.1596 4.8144 -0.0011 7 7 0.5426 5.7684 0.0026 8 6 3.3405 3.6856 -0.0005 9 9 3.9503 4.8911 -0.0016 10 6 4.0892 2.5469 0.0000 11 6 3.4584 1.2871 0.0059 12 6 4.2307 0.1105 0.0123 13 1 3.8194 -0.8076 -0.3807 14 6 5.5338 0.1301 0.5291 15 7 5.9146 1.1110 1.3044 16 14 6.7258 -1.2455 0.1093 17 1 7.4753 -0.8922 -1.1229 18 1 7.6794 -1.4338 1.2320 19 1 5.9702 -2.5041 -0.1146 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3634 0.5138 0.8899 23 1 0.2182 2.3150 -0.0014 24 1 5.1674 2.6103 0.0000 25 1 6.8163 1.1248 1.6617 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575646890.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:20 Heat of formation + Delta-G solvation = -44.587120 kcal Electronic energy + Delta-G solvation = -14184.944196 eV Core-core repulsion = 11464.082583 eV Total energy + Delta-G solvation = -2720.861613 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.87272 -38.91926 -36.45532 -35.48364 -33.88835 -30.48046 -28.76703 -26.71868 -26.11408 -22.17926 -21.04229 -18.37455 -17.93060 -16.27077 -15.86385 -15.50487 -14.94694 -14.74982 -14.49938 -13.63089 -13.20941 -12.94875 -12.68958 -12.32120 -12.19828 -11.93957 -11.62796 -11.44806 -11.33050 -10.83963 -10.73367 -10.54583 -9.93335 -9.86612 -9.50068 -7.94561 -7.37281 -7.10476 -4.73311 1.88957 2.61024 2.84461 2.89658 2.93019 3.58728 3.63159 3.78596 4.25322 4.41124 5.06397 5.16864 5.38325 5.63856 5.69655 5.81597 5.95641 6.38460 6.56697 6.70804 6.88429 7.08195 7.29190 7.37294 7.72635 8.01534 8.18812 8.30314 8.47052 8.63892 9.67150 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.027851 B = 0.010534 C = 0.007822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.111609 B = 2657.371648 C = 3578.864612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.308 6.308 3 C 0.008 3.992 4 C -0.105 4.105 5 C -0.203 4.203 6 C 0.289 3.711 7 N -0.497 5.497 8 C 0.152 3.848 9 F -0.157 7.157 10 C -0.201 4.201 11 C 0.134 3.866 12 C -0.401 4.401 13 H 0.099 0.901 14 C 0.068 3.932 15 N -0.756 5.756 16 Si 0.921 3.079 17 H -0.262 1.262 18 H -0.273 1.273 19 H -0.256 1.256 20 H 0.086 0.914 21 H 0.043 0.957 22 H 0.044 0.956 23 H 0.113 0.887 24 H 0.141 0.859 25 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.683 -5.512 -1.381 5.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.222 6.222 3 C -0.037 4.037 4 C -0.126 4.126 5 C -0.210 4.210 6 C -0.021 4.021 7 N -0.176 5.176 8 C 0.130 3.870 9 F -0.136 7.136 10 C -0.222 4.222 11 C 0.129 3.871 12 C -0.428 4.428 13 H 0.117 0.883 14 C -0.156 4.156 15 N -0.378 5.378 16 Si 0.744 3.256 17 H -0.187 1.187 18 H -0.198 1.198 19 H -0.179 1.179 20 H 0.104 0.896 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.131 0.869 24 H 0.159 0.841 25 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.323 -4.093 -1.209 4.468 hybrid contribution 0.609 -0.464 0.002 0.765 sum -0.715 -4.557 -1.207 4.768 Atomic orbital electron populations 1.22819 0.81077 1.02279 1.00329 1.85979 1.18723 1.27252 1.90294 1.18879 0.91977 0.82839 1.10012 1.20320 0.97861 0.90257 1.04211 1.14984 0.89111 0.87182 1.29742 1.25763 0.92504 0.92500 0.91371 1.81057 1.10219 1.11002 1.15317 1.17158 0.88647 0.80025 1.01196 1.91382 1.83664 1.44434 1.94123 1.20626 1.00432 0.89197 1.11924 1.16900 0.87521 0.93284 0.89358 1.19837 0.96177 0.96898 1.29861 0.88319 1.26242 0.99170 0.97638 0.92531 1.69745 1.19944 1.29487 1.18642 0.86057 0.79283 0.80815 0.79412 1.18654 1.19811 1.17927 0.89594 0.93840 0.93774 0.86924 0.84125 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.45 15 2 O -0.31 -6.17 9.77 -18.77 -0.18 -6.35 15 3 C 0.01 0.17 6.71 -38.43 -0.26 -0.09 15 4 C -0.10 -2.17 8.73 -39.07 -0.34 -2.51 15 5 C -0.20 -4.51 5.77 -106.48 -0.61 -5.12 15 6 C 0.29 6.44 14.94 -22.47 -0.34 6.11 15 7 N -0.50 -11.36 18.54 41.84 0.78 -10.58 15 8 C 0.15 3.50 7.21 -39.42 -0.28 3.22 15 9 F -0.16 -3.61 16.78 2.25 0.04 -3.57 15 10 C -0.20 -4.75 8.57 -39.28 -0.34 -5.08 15 11 C 0.13 3.16 5.58 -106.68 -0.60 2.56 15 12 C -0.40 -9.22 8.70 -37.90 -0.33 -9.55 15 13 H 0.10 2.20 7.64 -52.49 -0.40 1.80 15 14 C 0.07 1.46 5.13 -17.30 -0.09 1.37 15 15 N -0.76 -16.97 10.97 55.56 0.61 -16.36 15 16 Si 0.92 16.04 29.60 -169.99 -5.03 11.01 15 17 H -0.26 -4.53 7.11 56.52 0.40 -4.13 15 18 H -0.27 -4.68 7.11 56.52 0.40 -4.28 15 19 H -0.26 -4.42 7.11 56.52 0.40 -4.02 15 20 H 0.09 1.02 8.14 -51.93 -0.42 0.59 15 21 H 0.04 0.59 7.66 -51.93 -0.40 0.19 15 22 H 0.04 0.61 7.66 -51.93 -0.40 0.22 15 23 H 0.11 2.03 6.29 -52.49 -0.33 1.70 15 24 H 0.14 3.37 6.17 -52.48 -0.32 3.05 15 25 H 0.29 5.88 8.29 -40.82 -0.34 5.54 15 LS Contribution 239.98 15.07 3.62 3.62 Total: -1.00 -25.44 239.98 -3.77 -29.22 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -1.41 Total: 0.67 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -2.19 Total: -7.65 kcal Atomic # 7 Polarization: -28.33 SS G_CDS: 1.38 Total: -26.94 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.18 Total: -6.35 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.04 Total: -3.57 kcal Atomic # 14 Polarization: 16.04 SS G_CDS: -5.03 Total: 11.01 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -25.44 -3.77 -29.22 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646890.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.372 kcal (2) G-P(sol) polarization free energy of solvation -25.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds