Wall clock time and date at job start Mon Mar 30 2020 02:45:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.35689 * 116.99439 * 2 1
4 4 C 1.37926 * 120.16067 * 359.97438 * 3 2 1
5 5 C 1.39917 * 119.92445 * 180.02562 * 4 3 2
6 6 C 1.43192 * 119.88084 * 180.02562 * 5 4 3
7 7 N 5.83607 * 81.26373 * 0.02562 * 2 1 3
8 8 C 1.40529 * 120.23381 * 359.97438 * 5 4 3
9 9 F 1.35104 * 119.83576 * 179.97438 * 8 5 4
10 10 C 1.36284 * 120.32475 * 0.02562 * 8 5 4
11 11 C 1.40895 * 120.07163 * 359.72382 * 10 8 5
12 12 C 1.40745 * 120.11838 * 180.27674 * 11 10 8
13 13 H 1.08000 * 119.99594 * 205.13906 * 12 11 10
14 14 C 1.40189 * 120.00356 * 25.14909 * 12 11 10
15 15 N 1.30710 * 119.99874 * 17.62391 * 14 12 11
16 16 Si 1.86796 * 120.00111 * 197.63170 * 14 12 11
17 17 H 1.48499 * 109.47326 * 89.99535 * 16 14 12
18 18 H 1.48499 * 109.47008 * 209.99702 * 16 14 12
19 19 H 1.48496 * 109.47036 * 329.99396 * 16 14 12
20 20 H 1.09002 * 109.46851 * 179.97438 * 1 2 3
21 21 H 1.09000 * 109.46801 * 60.00652 * 1 2 3
22 22 H 1.08992 * 109.47558 * 300.00118 * 1 2 3
23 23 H 1.08000 * 120.04152 * 359.97438 * 4 3 2
24 24 H 1.08005 * 119.96286 * 179.97438 * 10 8 5
25 25 H 0.96999 * 119.99845 * 180.02562 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0449 1.2091 0.0000
4 6 1.2969 2.3678 -0.0005
5 6 1.9371 3.6119 -0.0011
6 6 1.1596 4.8144 -0.0011
7 7 0.5426 5.7684 0.0026
8 6 3.3405 3.6856 -0.0005
9 9 3.9503 4.8911 -0.0016
10 6 4.0892 2.5469 0.0000
11 6 3.4584 1.2871 0.0059
12 6 4.2307 0.1105 0.0123
13 1 3.8194 -0.8076 -0.3807
14 6 5.5338 0.1301 0.5291
15 7 5.9146 1.1110 1.3044
16 14 6.7258 -1.2455 0.1093
17 1 7.4753 -0.8922 -1.1229
18 1 7.6794 -1.4338 1.2320
19 1 5.9702 -2.5041 -0.1146
20 1 -0.3633 -1.0277 -0.0005
21 1 -0.3633 0.5137 -0.8901
22 1 -0.3634 0.5138 0.8899
23 1 0.2182 2.3150 -0.0014
24 1 5.1674 2.6103 0.0000
25 1 6.8163 1.1248 1.6617
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000575646890.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:20
Heat of formation + Delta-G solvation = -44.587120 kcal
Electronic energy + Delta-G solvation = -14184.944196 eV
Core-core repulsion = 11464.082583 eV
Total energy + Delta-G solvation = -2720.861613 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 221.059 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-47.87272 -38.91926 -36.45532 -35.48364 -33.88835 -30.48046 -28.76703 -26.71868
-26.11408 -22.17926 -21.04229 -18.37455 -17.93060 -16.27077 -15.86385 -15.50487
-14.94694 -14.74982 -14.49938 -13.63089 -13.20941 -12.94875 -12.68958 -12.32120
-12.19828 -11.93957 -11.62796 -11.44806 -11.33050 -10.83963 -10.73367 -10.54583
-9.93335 -9.86612 -9.50068 -7.94561 -7.37281 -7.10476 -4.73311 1.88957
2.61024 2.84461 2.89658 2.93019 3.58728 3.63159 3.78596 4.25322
4.41124 5.06397 5.16864 5.38325 5.63856 5.69655 5.81597 5.95641
6.38460 6.56697 6.70804 6.88429 7.08195 7.29190 7.37294 7.72635
8.01534 8.18812 8.30314 8.47052 8.63892 9.67150
Molecular weight = 221.06amu
Principal moments of inertia in cm(-1)
A = 0.027851 B = 0.010534 C = 0.007822
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1005.111609 B = 2657.371648 C = 3578.864612
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.308 6.308
3 C 0.008 3.992
4 C -0.105 4.105
5 C -0.203 4.203
6 C 0.289 3.711
7 N -0.497 5.497
8 C 0.152 3.848
9 F -0.157 7.157
10 C -0.201 4.201
11 C 0.134 3.866
12 C -0.401 4.401
13 H 0.099 0.901
14 C 0.068 3.932
15 N -0.756 5.756
16 Si 0.921 3.079
17 H -0.262 1.262
18 H -0.273 1.273
19 H -0.256 1.256
20 H 0.086 0.914
21 H 0.043 0.957
22 H 0.044 0.956
23 H 0.113 0.887
24 H 0.141 0.859
25 H 0.293 0.707
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.683 -5.512 -1.381 5.724
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.222 6.222
3 C -0.037 4.037
4 C -0.126 4.126
5 C -0.210 4.210
6 C -0.021 4.021
7 N -0.176 5.176
8 C 0.130 3.870
9 F -0.136 7.136
10 C -0.222 4.222
11 C 0.129 3.871
12 C -0.428 4.428
13 H 0.117 0.883
14 C -0.156 4.156
15 N -0.378 5.378
16 Si 0.744 3.256
17 H -0.187 1.187
18 H -0.198 1.198
19 H -0.179 1.179
20 H 0.104 0.896
21 H 0.062 0.938
22 H 0.062 0.938
23 H 0.131 0.869
24 H 0.159 0.841
25 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -1.323 -4.093 -1.209 4.468
hybrid contribution 0.609 -0.464 0.002 0.765
sum -0.715 -4.557 -1.207 4.768
Atomic orbital electron populations
1.22819 0.81077 1.02279 1.00329 1.85979 1.18723 1.27252 1.90294
1.18879 0.91977 0.82839 1.10012 1.20320 0.97861 0.90257 1.04211
1.14984 0.89111 0.87182 1.29742 1.25763 0.92504 0.92500 0.91371
1.81057 1.10219 1.11002 1.15317 1.17158 0.88647 0.80025 1.01196
1.91382 1.83664 1.44434 1.94123 1.20626 1.00432 0.89197 1.11924
1.16900 0.87521 0.93284 0.89358 1.19837 0.96177 0.96898 1.29861
0.88319 1.26242 0.99170 0.97638 0.92531 1.69745 1.19944 1.29487
1.18642 0.86057 0.79283 0.80815 0.79412 1.18654 1.19811 1.17927
0.89594 0.93840 0.93774 0.86924 0.84125 0.89561
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.45 9.81 101.05 0.99 1.45 15
2 O -0.31 -6.17 9.77 -18.77 -0.18 -6.35 15
3 C 0.01 0.17 6.71 -38.43 -0.26 -0.09 15
4 C -0.10 -2.17 8.73 -39.07 -0.34 -2.51 15
5 C -0.20 -4.51 5.77 -106.48 -0.61 -5.12 15
6 C 0.29 6.44 14.94 -22.47 -0.34 6.11 15
7 N -0.50 -11.36 18.54 41.84 0.78 -10.58 15
8 C 0.15 3.50 7.21 -39.42 -0.28 3.22 15
9 F -0.16 -3.61 16.78 2.25 0.04 -3.57 15
10 C -0.20 -4.75 8.57 -39.28 -0.34 -5.08 15
11 C 0.13 3.16 5.58 -106.68 -0.60 2.56 15
12 C -0.40 -9.22 8.70 -37.90 -0.33 -9.55 15
13 H 0.10 2.20 7.64 -52.49 -0.40 1.80 15
14 C 0.07 1.46 5.13 -17.30 -0.09 1.37 15
15 N -0.76 -16.97 10.97 55.56 0.61 -16.36 15
16 Si 0.92 16.04 29.60 -169.99 -5.03 11.01 15
17 H -0.26 -4.53 7.11 56.52 0.40 -4.13 15
18 H -0.27 -4.68 7.11 56.52 0.40 -4.28 15
19 H -0.26 -4.42 7.11 56.52 0.40 -4.02 15
20 H 0.09 1.02 8.14 -51.93 -0.42 0.59 15
21 H 0.04 0.59 7.66 -51.93 -0.40 0.19 15
22 H 0.04 0.61 7.66 -51.93 -0.40 0.22 15
23 H 0.11 2.03 6.29 -52.49 -0.33 1.70 15
24 H 0.14 3.37 6.17 -52.48 -0.32 3.05 15
25 H 0.29 5.88 8.29 -40.82 -0.34 5.54 15
LS Contribution 239.98 15.07 3.62 3.62
Total: -1.00 -25.44 239.98 -3.77 -29.22
By element:
Atomic # 1 Polarization: 2.08 SS G_CDS: -1.41 Total: 0.67 kcal
Atomic # 6 Polarization: -5.45 SS G_CDS: -2.19 Total: -7.65 kcal
Atomic # 7 Polarization: -28.33 SS G_CDS: 1.38 Total: -26.94 kcal
Atomic # 8 Polarization: -6.17 SS G_CDS: -0.18 Total: -6.35 kcal
Atomic # 9 Polarization: -3.61 SS G_CDS: 0.04 Total: -3.57 kcal
Atomic # 14 Polarization: 16.04 SS G_CDS: -5.03 Total: 11.01 kcal
Total LS contribution 3.62 Total: 3.62 kcal
Total: -25.44 -3.77 -29.22 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000575646890.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.372 kcal
(2) G-P(sol) polarization free energy of solvation -25.441 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.813 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.774 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.216 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.587 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds