Wall clock time and date at job start Mon Mar 30 2020 02:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35689 * 116.99439 * 2 1 4 4 C 1.37926 * 120.16067 * 359.97438 * 3 2 1 5 5 C 1.39917 * 119.92445 * 180.02562 * 4 3 2 6 6 C 1.43192 * 119.88084 * 180.02562 * 5 4 3 7 7 N 5.83607 * 81.26373 * 0.02562 * 2 1 3 8 8 C 1.40529 * 120.23381 * 359.97438 * 5 4 3 9 9 F 1.35104 * 119.83576 * 179.97438 * 8 5 4 10 10 C 1.36284 * 120.32475 * 0.02562 * 8 5 4 11 11 C 1.40895 * 120.07163 * 359.72382 * 10 8 5 12 12 C 1.40745 * 120.11838 * 180.27674 * 11 10 8 13 13 H 1.08000 * 119.99594 * 205.13906 * 12 11 10 14 14 C 1.40189 * 120.00356 * 25.14909 * 12 11 10 15 15 N 1.30710 * 119.99874 * 17.62391 * 14 12 11 16 16 Si 1.86796 * 120.00111 * 197.63170 * 14 12 11 17 17 H 1.48499 * 109.47326 * 89.99535 * 16 14 12 18 18 H 1.48499 * 109.47008 * 209.99702 * 16 14 12 19 19 H 1.48496 * 109.47036 * 329.99396 * 16 14 12 20 20 H 1.09002 * 109.46851 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46801 * 60.00652 * 1 2 3 22 22 H 1.08992 * 109.47558 * 300.00118 * 1 2 3 23 23 H 1.08000 * 120.04152 * 359.97438 * 4 3 2 24 24 H 1.08005 * 119.96286 * 179.97438 * 10 8 5 25 25 H 0.96999 * 119.99845 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2091 0.0000 4 6 1.2969 2.3678 -0.0005 5 6 1.9371 3.6119 -0.0011 6 6 1.1596 4.8144 -0.0011 7 7 0.5426 5.7684 0.0026 8 6 3.3405 3.6856 -0.0005 9 9 3.9503 4.8911 -0.0016 10 6 4.0892 2.5469 0.0000 11 6 3.4584 1.2871 0.0059 12 6 4.2307 0.1105 0.0123 13 1 3.8194 -0.8076 -0.3807 14 6 5.5338 0.1301 0.5291 15 7 5.9146 1.1110 1.3044 16 14 6.7258 -1.2455 0.1093 17 1 7.4753 -0.8922 -1.1229 18 1 7.6794 -1.4338 1.2320 19 1 5.9702 -2.5041 -0.1146 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3634 0.5138 0.8899 23 1 0.2182 2.3150 -0.0014 24 1 5.1674 2.6103 0.0000 25 1 6.8163 1.1248 1.6617 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575646890.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:20 Heat of formation + Delta-G solvation = -57.855158 kcal Electronic energy + Delta-G solvation = -14185.519541 eV Core-core repulsion = 11464.082583 eV Total energy + Delta-G solvation = -2721.436959 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.69286 -40.52154 -38.09762 -37.22311 -35.58437 -32.19104 -30.44275 -28.14958 -27.71320 -23.87741 -22.74128 -20.04402 -19.63622 -17.95843 -17.54266 -17.13210 -16.55338 -16.31448 -16.09416 -15.15869 -14.86977 -14.53251 -14.46611 -14.07335 -13.91913 -13.57024 -13.17742 -12.89287 -12.81912 -12.39737 -12.23056 -12.08315 -11.53745 -11.41900 -11.13069 -9.69040 -9.04951 -8.77459 -6.47247 0.15445 0.87988 1.43108 1.47771 1.60298 1.80753 2.08902 2.18686 2.69492 2.83324 3.31038 3.43303 3.64277 4.19240 4.50541 4.58271 4.70939 4.85492 4.87161 5.05279 5.19911 5.36965 5.54949 5.62261 5.99627 6.28688 6.47894 6.58616 6.70382 7.03455 8.06348 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.027851 B = 0.010534 C = 0.007822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.111609 B = 2657.371648 C = 3578.864612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.326 6.326 3 C 0.006 3.994 4 C -0.099 4.099 5 C -0.209 4.209 6 C 0.296 3.704 7 N -0.507 5.507 8 C 0.140 3.860 9 F -0.161 7.161 10 C -0.214 4.214 11 C 0.108 3.892 12 C -0.419 4.419 13 H 0.101 0.899 14 C 0.034 3.966 15 N -0.784 5.784 16 Si 0.992 3.008 17 H -0.258 1.258 18 H -0.266 1.266 19 H -0.252 1.252 20 H 0.116 0.884 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.142 0.858 24 H 0.130 0.870 25 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.020 -6.873 -1.530 7.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.240 6.240 3 C -0.039 4.039 4 C -0.120 4.120 5 C -0.217 4.217 6 C -0.013 4.013 7 N -0.187 5.187 8 C 0.119 3.881 9 F -0.140 7.140 10 C -0.235 4.235 11 C 0.104 3.896 12 C -0.445 4.445 13 H 0.119 0.881 14 C -0.188 4.188 15 N -0.407 5.407 16 Si 0.811 3.189 17 H -0.183 1.183 18 H -0.190 1.190 19 H -0.175 1.175 20 H 0.135 0.865 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.159 0.841 24 H 0.147 0.853 25 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.685 -5.441 -1.355 5.855 hybrid contribution 0.666 -0.082 0.074 0.675 sum -1.019 -5.523 -1.282 5.761 Atomic orbital electron populations 1.23190 0.78196 1.04764 1.01291 1.85946 1.21685 1.26330 1.90076 1.18907 0.91676 0.83934 1.09344 1.20523 0.99206 0.89190 1.03125 1.15066 0.88644 0.87770 1.30175 1.25732 0.92235 0.92339 0.91042 1.81058 1.10655 1.11118 1.15843 1.17288 0.89224 0.79811 1.01802 1.91362 1.83840 1.44555 1.94227 1.20540 0.99980 0.89713 1.13231 1.17231 0.88927 0.93489 0.89994 1.20093 0.97309 0.96841 1.30268 0.88125 1.27076 1.00134 0.99837 0.91711 1.69770 1.20912 1.30973 1.19003 0.85017 0.76922 0.77706 0.79237 1.18282 1.19046 1.17491 0.86540 0.92579 0.92931 0.84082 0.85257 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.81 113.37 1.11 1.65 15 2 O -0.33 -12.51 9.77 -90.08 -0.88 -13.39 15 3 C 0.01 0.28 6.71 23.02 0.15 0.43 15 4 C -0.10 -3.96 8.73 22.60 0.20 -3.77 15 5 C -0.21 -9.17 5.77 -21.07 -0.12 -9.29 15 6 C 0.30 12.94 14.94 88.33 1.32 14.25 15 7 N -0.51 -22.64 18.54 19.00 0.35 -22.29 15 8 C 0.14 6.56 7.21 22.37 0.16 6.72 15 9 F -0.16 -7.48 16.78 44.97 0.75 -6.73 15 10 C -0.21 -10.27 8.57 22.46 0.19 -10.08 15 11 C 0.11 5.13 5.58 -21.20 -0.12 5.01 15 12 C -0.42 -19.22 8.70 23.36 0.20 -19.02 15 13 H 0.10 4.45 7.64 -2.91 -0.02 4.43 15 14 C 0.03 1.43 5.13 85.33 0.44 1.87 15 15 N -0.78 -35.24 10.97 21.87 0.24 -35.00 15 16 Si 0.99 31.86 29.60 68.60 2.03 33.89 15 17 H -0.26 -8.12 7.11 99.48 0.71 -7.42 15 18 H -0.27 -8.19 7.11 99.48 0.71 -7.48 15 19 H -0.25 -7.86 7.11 99.48 0.71 -7.15 15 20 H 0.12 2.36 8.14 -2.39 -0.02 2.34 15 21 H 0.06 1.35 7.66 -2.39 -0.02 1.34 15 22 H 0.05 1.31 7.66 -2.39 -0.02 1.29 15 23 H 0.14 4.73 6.29 -2.91 -0.02 4.71 15 24 H 0.13 6.39 6.17 -2.91 -0.02 6.38 15 25 H 0.30 12.06 8.29 -92.71 -0.77 11.29 15 Total: -1.00 -53.28 239.98 7.27 -46.00 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 1.24 Total: 9.73 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 3.54 Total: -12.21 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: 0.59 Total: -57.29 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.88 Total: -13.39 kcal Atomic # 9 Polarization: -7.48 SS G_CDS: 0.75 Total: -6.73 kcal Atomic # 14 Polarization: 31.86 SS G_CDS: 2.03 Total: 33.89 kcal Total: -53.28 7.27 -46.00 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646890.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.850 kcal (2) G-P(sol) polarization free energy of solvation -53.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds