Wall clock time and date at job start Mon Mar 30 2020 02:45:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.35689 * 116.99439 * 2 1
4 4 C 1.37926 * 120.16067 * 359.97438 * 3 2 1
5 5 C 1.39917 * 119.92445 * 180.02562 * 4 3 2
6 6 C 1.43192 * 119.88084 * 180.02562 * 5 4 3
7 7 N 5.83607 * 81.26373 * 0.02562 * 2 1 3
8 8 C 1.40529 * 120.23381 * 359.97438 * 5 4 3
9 9 F 1.35104 * 119.83576 * 179.97438 * 8 5 4
10 10 C 1.36284 * 120.32475 * 0.02562 * 8 5 4
11 11 C 1.40895 * 120.07163 * 359.72382 * 10 8 5
12 12 C 1.40745 * 120.11838 * 180.27674 * 11 10 8
13 13 H 1.08000 * 119.99594 * 205.13906 * 12 11 10
14 14 C 1.40189 * 120.00356 * 25.14909 * 12 11 10
15 15 N 1.30710 * 119.99874 * 17.62391 * 14 12 11
16 16 Si 1.86796 * 120.00111 * 197.63170 * 14 12 11
17 17 H 1.48499 * 109.47326 * 89.99535 * 16 14 12
18 18 H 1.48499 * 109.47008 * 209.99702 * 16 14 12
19 19 H 1.48496 * 109.47036 * 329.99396 * 16 14 12
20 20 H 1.09002 * 109.46851 * 179.97438 * 1 2 3
21 21 H 1.09000 * 109.46801 * 60.00652 * 1 2 3
22 22 H 1.08992 * 109.47558 * 300.00118 * 1 2 3
23 23 H 1.08000 * 120.04152 * 359.97438 * 4 3 2
24 24 H 1.08005 * 119.96286 * 179.97438 * 10 8 5
25 25 H 0.96999 * 119.99845 * 180.02562 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0449 1.2091 0.0000
4 6 1.2969 2.3678 -0.0005
5 6 1.9371 3.6119 -0.0011
6 6 1.1596 4.8144 -0.0011
7 7 0.5426 5.7684 0.0026
8 6 3.3405 3.6856 -0.0005
9 9 3.9503 4.8911 -0.0016
10 6 4.0892 2.5469 0.0000
11 6 3.4584 1.2871 0.0059
12 6 4.2307 0.1105 0.0123
13 1 3.8194 -0.8076 -0.3807
14 6 5.5338 0.1301 0.5291
15 7 5.9146 1.1110 1.3044
16 14 6.7258 -1.2455 0.1093
17 1 7.4753 -0.8922 -1.1229
18 1 7.6794 -1.4338 1.2320
19 1 5.9702 -2.5041 -0.1146
20 1 -0.3633 -1.0277 -0.0005
21 1 -0.3633 0.5137 -0.8901
22 1 -0.3634 0.5138 0.8899
23 1 0.2182 2.3150 -0.0014
24 1 5.1674 2.6103 0.0000
25 1 6.8163 1.1248 1.6617
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000575646890.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:20
Heat of formation + Delta-G solvation = -57.855158 kcal
Electronic energy + Delta-G solvation = -14185.519541 eV
Core-core repulsion = 11464.082583 eV
Total energy + Delta-G solvation = -2721.436959 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 221.059 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-49.69286 -40.52154 -38.09762 -37.22311 -35.58437 -32.19104 -30.44275 -28.14958
-27.71320 -23.87741 -22.74128 -20.04402 -19.63622 -17.95843 -17.54266 -17.13210
-16.55338 -16.31448 -16.09416 -15.15869 -14.86977 -14.53251 -14.46611 -14.07335
-13.91913 -13.57024 -13.17742 -12.89287 -12.81912 -12.39737 -12.23056 -12.08315
-11.53745 -11.41900 -11.13069 -9.69040 -9.04951 -8.77459 -6.47247 0.15445
0.87988 1.43108 1.47771 1.60298 1.80753 2.08902 2.18686 2.69492
2.83324 3.31038 3.43303 3.64277 4.19240 4.50541 4.58271 4.70939
4.85492 4.87161 5.05279 5.19911 5.36965 5.54949 5.62261 5.99627
6.28688 6.47894 6.58616 6.70382 7.03455 8.06348
Molecular weight = 221.06amu
Principal moments of inertia in cm(-1)
A = 0.027851 B = 0.010534 C = 0.007822
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1005.111609 B = 2657.371648 C = 3578.864612
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.020 3.980
2 O -0.326 6.326
3 C 0.006 3.994
4 C -0.099 4.099
5 C -0.209 4.209
6 C 0.296 3.704
7 N -0.507 5.507
8 C 0.140 3.860
9 F -0.161 7.161
10 C -0.214 4.214
11 C 0.108 3.892
12 C -0.419 4.419
13 H 0.101 0.899
14 C 0.034 3.966
15 N -0.784 5.784
16 Si 0.992 3.008
17 H -0.258 1.258
18 H -0.266 1.266
19 H -0.252 1.252
20 H 0.116 0.884
21 H 0.056 0.944
22 H 0.052 0.948
23 H 0.142 0.858
24 H 0.130 0.870
25 H 0.303 0.697
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.020 -6.873 -1.530 7.115
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 O -0.240 6.240
3 C -0.039 4.039
4 C -0.120 4.120
5 C -0.217 4.217
6 C -0.013 4.013
7 N -0.187 5.187
8 C 0.119 3.881
9 F -0.140 7.140
10 C -0.235 4.235
11 C 0.104 3.896
12 C -0.445 4.445
13 H 0.119 0.881
14 C -0.188 4.188
15 N -0.407 5.407
16 Si 0.811 3.189
17 H -0.183 1.183
18 H -0.190 1.190
19 H -0.175 1.175
20 H 0.135 0.865
21 H 0.074 0.926
22 H 0.071 0.929
23 H 0.159 0.841
24 H 0.147 0.853
25 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -1.685 -5.441 -1.355 5.855
hybrid contribution 0.666 -0.082 0.074 0.675
sum -1.019 -5.523 -1.282 5.761
Atomic orbital electron populations
1.23190 0.78196 1.04764 1.01291 1.85946 1.21685 1.26330 1.90076
1.18907 0.91676 0.83934 1.09344 1.20523 0.99206 0.89190 1.03125
1.15066 0.88644 0.87770 1.30175 1.25732 0.92235 0.92339 0.91042
1.81058 1.10655 1.11118 1.15843 1.17288 0.89224 0.79811 1.01802
1.91362 1.83840 1.44555 1.94227 1.20540 0.99980 0.89713 1.13231
1.17231 0.88927 0.93489 0.89994 1.20093 0.97309 0.96841 1.30268
0.88125 1.27076 1.00134 0.99837 0.91711 1.69770 1.20912 1.30973
1.19003 0.85017 0.76922 0.77706 0.79237 1.18282 1.19046 1.17491
0.86540 0.92579 0.92931 0.84082 0.85257 0.88583
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.54 9.81 113.37 1.11 1.65 15
2 O -0.33 -12.51 9.77 -90.08 -0.88 -13.39 15
3 C 0.01 0.28 6.71 23.02 0.15 0.43 15
4 C -0.10 -3.96 8.73 22.60 0.20 -3.77 15
5 C -0.21 -9.17 5.77 -21.07 -0.12 -9.29 15
6 C 0.30 12.94 14.94 88.33 1.32 14.25 15
7 N -0.51 -22.64 18.54 19.00 0.35 -22.29 15
8 C 0.14 6.56 7.21 22.37 0.16 6.72 15
9 F -0.16 -7.48 16.78 44.97 0.75 -6.73 15
10 C -0.21 -10.27 8.57 22.46 0.19 -10.08 15
11 C 0.11 5.13 5.58 -21.20 -0.12 5.01 15
12 C -0.42 -19.22 8.70 23.36 0.20 -19.02 15
13 H 0.10 4.45 7.64 -2.91 -0.02 4.43 15
14 C 0.03 1.43 5.13 85.33 0.44 1.87 15
15 N -0.78 -35.24 10.97 21.87 0.24 -35.00 15
16 Si 0.99 31.86 29.60 68.60 2.03 33.89 15
17 H -0.26 -8.12 7.11 99.48 0.71 -7.42 15
18 H -0.27 -8.19 7.11 99.48 0.71 -7.48 15
19 H -0.25 -7.86 7.11 99.48 0.71 -7.15 15
20 H 0.12 2.36 8.14 -2.39 -0.02 2.34 15
21 H 0.06 1.35 7.66 -2.39 -0.02 1.34 15
22 H 0.05 1.31 7.66 -2.39 -0.02 1.29 15
23 H 0.14 4.73 6.29 -2.91 -0.02 4.71 15
24 H 0.13 6.39 6.17 -2.91 -0.02 6.38 15
25 H 0.30 12.06 8.29 -92.71 -0.77 11.29 15
Total: -1.00 -53.28 239.98 7.27 -46.00
By element:
Atomic # 1 Polarization: 8.49 SS G_CDS: 1.24 Total: 9.73 kcal
Atomic # 6 Polarization: -15.75 SS G_CDS: 3.54 Total: -12.21 kcal
Atomic # 7 Polarization: -57.88 SS G_CDS: 0.59 Total: -57.29 kcal
Atomic # 8 Polarization: -12.51 SS G_CDS: -0.88 Total: -13.39 kcal
Atomic # 9 Polarization: -7.48 SS G_CDS: 0.75 Total: -6.73 kcal
Atomic # 14 Polarization: 31.86 SS G_CDS: 2.03 Total: 33.89 kcal
Total: -53.28 7.27 -46.00 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000575646890.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.850 kcal
(2) G-P(sol) polarization free energy of solvation -53.279 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.129 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.274 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.005 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.855 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds