Wall clock time and date at job start Mon Mar 30 2020 02:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35686 * 117.00270 * 2 1 4 4 C 1.38677 * 120.03588 * 359.97438 * 3 2 1 5 5 C 1.38708 * 121.19895 * 180.02562 * 4 3 2 6 6 F 1.35099 * 119.38971 * 180.02562 * 5 4 3 7 7 C 1.37874 * 121.21674 * 359.73879 * 5 4 3 8 8 C 1.40677 * 119.95746 * 0.52357 * 7 5 4 9 9 C 1.40798 * 120.57128 * 179.76171 * 8 7 5 10 10 H 1.07993 * 120.00105 * 205.01421 * 9 8 7 11 11 C 1.40236 * 119.99862 * 25.00969 * 9 8 7 12 12 N 1.30666 * 120.00010 * 17.00506 * 11 9 8 13 13 Si 1.86805 * 119.99899 * 196.99987 * 11 9 8 14 14 H 1.48494 * 109.47076 * 265.18068 * 13 11 9 15 15 H 1.48501 * 109.47089 * 25.18072 * 13 11 9 16 16 H 1.48502 * 109.46556 * 145.18098 * 13 11 9 17 17 C 1.40023 * 120.03774 * 180.02562 * 3 2 1 18 18 C 1.43207 * 120.57756 * 359.97438 * 17 3 2 19 19 N 3.54087 * 166.01678 * 180.02562 * 2 1 3 20 20 H 1.09001 * 109.47623 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46629 * 299.99901 * 1 2 3 22 22 H 1.09002 * 109.47373 * 59.99567 * 1 2 3 23 23 H 1.08005 * 119.39805 * 0.02562 * 4 3 2 24 24 H 1.08003 * 120.01926 * 180.26187 * 7 5 4 25 25 H 0.96998 * 119.99909 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2905 2.3725 -0.0005 5 6 1.8951 3.6209 -0.0011 6 9 1.1246 4.7307 -0.0011 7 6 3.2677 3.7501 0.0043 8 6 4.0814 2.6025 -0.0007 9 6 5.4845 2.7195 -0.0004 10 1 6.0930 1.9214 -0.3993 11 6 6.0919 3.8723 0.5179 12 7 5.4119 4.6785 1.2893 13 14 7.8731 4.2554 0.1056 14 1 8.7535 3.7329 1.1812 15 1 8.2321 3.6123 -1.1839 16 1 8.0496 5.7255 -0.0083 17 6 3.4433 1.2831 -0.0005 18 6 4.2360 0.0904 -0.0005 19 7 4.8649 -0.8556 -0.0004 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 0.2126 2.3054 -0.0005 24 1 3.7180 4.7318 0.0080 25 1 5.8321 5.4757 1.6481 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575647757.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:23 Heat of formation + Delta-G solvation = -48.449552 kcal Electronic energy + Delta-G solvation = -14167.884155 eV Core-core repulsion = 11446.855054 eV Total energy + Delta-G solvation = -2721.029101 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.92006 -39.05941 -36.57152 -34.97861 -33.77281 -30.02110 -29.32551 -26.81942 -25.82226 -22.17961 -21.26080 -18.43488 -17.49076 -16.63162 -15.83149 -15.49776 -15.23268 -14.55102 -14.45314 -13.82152 -13.43499 -12.90391 -12.61816 -12.51953 -11.92622 -11.67475 -11.58977 -11.22599 -11.14514 -10.88467 -10.73071 -10.50005 -10.10953 -10.01783 -9.43611 -7.79348 -7.36140 -7.17289 -4.92975 2.01598 2.51430 2.87753 2.91147 2.97992 3.61476 3.88601 3.97037 4.00716 4.41797 5.22797 5.30413 5.42651 5.53311 5.54911 5.75132 6.06685 6.35910 6.45777 6.64393 6.75442 7.15750 7.33066 7.42940 7.60742 7.96543 8.13279 8.31221 8.38914 8.89037 9.62880 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.027569 B = 0.010870 C = 0.007982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.373386 B = 2575.205511 C = 3507.165178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.320 6.320 3 C 0.230 3.770 4 C -0.372 4.372 5 C 0.164 3.836 6 F -0.160 7.160 7 C -0.227 4.227 8 C 0.187 3.813 9 C -0.414 4.414 10 H 0.093 0.907 11 C 0.074 3.926 12 N -0.752 5.752 13 Si 0.920 3.080 14 H -0.263 1.263 15 H -0.253 1.253 16 H -0.268 1.268 17 C -0.215 4.215 18 C 0.311 3.689 19 N -0.507 5.507 20 H 0.089 0.911 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.115 0.885 24 H 0.138 0.862 25 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 1.561 -1.282 4.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.233 6.233 3 C 0.182 3.818 4 C -0.393 4.393 5 C 0.144 3.856 6 F -0.138 7.138 7 C -0.247 4.247 8 C 0.181 3.819 9 C -0.441 4.441 10 H 0.111 0.889 11 C -0.151 4.151 12 N -0.373 5.373 13 Si 0.742 3.258 14 H -0.188 1.188 15 H -0.177 1.177 16 H -0.193 1.193 17 C -0.222 4.222 18 C 0.001 3.999 19 N -0.187 5.187 20 H 0.108 0.892 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.133 0.867 24 H 0.155 0.845 25 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.295 0.170 -1.123 3.485 hybrid contribution -0.053 1.025 -0.005 1.027 sum -3.347 1.196 -1.127 3.729 Atomic orbital electron populations 1.22926 0.79370 1.02712 1.01342 1.86017 1.20734 1.28051 1.88518 1.18223 0.89826 0.82822 0.90959 1.19996 0.98662 0.90760 1.29844 1.17340 0.88609 0.80906 0.98774 1.91368 1.76063 1.52441 1.93970 1.21113 0.89744 1.00326 1.13530 1.17879 0.92577 0.86936 0.84494 1.19811 0.91540 1.01839 1.30888 0.88888 1.26201 1.02056 0.94522 0.92285 1.69728 1.39075 1.10168 1.18350 0.86060 0.80008 0.78844 0.80844 1.18820 1.17651 1.19303 1.16230 0.86785 0.88088 1.31076 1.25289 0.91780 0.91736 0.91058 1.80989 1.10380 1.11981 1.15313 0.89234 0.92856 0.92874 0.86688 0.84470 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.80 101.05 0.99 1.44 15 2 O -0.32 -6.33 9.94 -18.76 -0.19 -6.52 15 3 C 0.23 5.01 6.69 -38.75 -0.26 4.75 15 4 C -0.37 -7.73 8.98 -39.25 -0.35 -8.08 15 5 C 0.16 3.63 7.25 -39.54 -0.29 3.35 15 6 F -0.16 -3.37 17.24 2.25 0.04 -3.33 15 7 C -0.23 -5.36 8.66 -38.79 -0.34 -5.70 15 8 C 0.19 4.57 5.73 -104.65 -0.60 3.97 15 9 C -0.41 -9.99 8.57 -37.86 -0.32 -10.31 15 10 H 0.09 2.24 7.39 -52.49 -0.39 1.85 15 11 C 0.07 1.64 5.16 -17.30 -0.09 1.56 15 12 N -0.75 -17.04 10.96 55.56 0.61 -16.43 15 13 Si 0.92 16.71 29.59 -169.99 -5.03 11.68 15 14 H -0.26 -4.79 7.11 56.52 0.40 -4.39 15 15 H -0.25 -4.64 7.11 56.52 0.40 -4.23 15 16 H -0.27 -4.67 7.11 56.52 0.40 -4.27 15 17 C -0.21 -5.14 5.96 -103.94 -0.62 -5.76 15 18 C 0.31 7.63 13.86 -22.47 -0.31 7.32 15 19 N -0.51 -12.64 18.54 41.84 0.78 -11.87 15 20 H 0.09 1.01 8.14 -51.93 -0.42 0.58 15 21 H 0.05 0.70 7.65 -51.93 -0.40 0.31 15 22 H 0.05 0.69 7.65 -51.93 -0.40 0.29 15 23 H 0.12 2.08 6.23 -52.48 -0.33 1.75 15 24 H 0.14 3.28 6.19 -52.48 -0.32 2.96 15 25 H 0.29 5.91 8.29 -40.82 -0.34 5.57 15 LS Contribution 239.79 15.07 3.61 3.61 Total: -1.00 -26.13 239.79 -3.76 -29.89 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -1.39 Total: 0.42 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -2.19 Total: -7.46 kcal Atomic # 7 Polarization: -29.68 SS G_CDS: 1.38 Total: -28.30 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.19 Total: -6.52 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.04 Total: -3.33 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -5.03 Total: 11.68 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -26.13 -3.76 -29.89 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575647757.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.557 kcal (2) G-P(sol) polarization free energy of solvation -26.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds