Wall clock time and date at job start Mon Mar 30 2020 02:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35718 * 117.00473 * 2 1 4 4 C 1.38299 * 120.19560 * 270.26002 * 3 2 1 5 5 F 1.35101 * 120.07954 * 0.02562 * 4 3 2 6 6 C 1.40016 * 119.84222 * 180.29615 * 4 3 2 7 7 C 1.43204 * 119.87797 * 179.71774 * 6 4 3 8 8 N 5.84126 * 111.66560 * 321.14679 * 2 1 3 9 9 C 1.40372 * 120.24027 * 359.69214 * 6 4 3 10 10 C 1.35966 * 120.40077 * 0.02649 * 9 6 4 11 11 C 1.41028 * 120.14915 * 359.97438 * 10 9 6 12 12 C 1.40773 * 120.11859 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00311 * 206.11918 * 12 11 10 14 14 C 1.40187 * 120.00233 * 25.84830 * 12 11 10 15 15 N 1.30705 * 119.99937 * 16.66146 * 14 12 11 16 16 Si 1.86803 * 119.99989 * 196.65930 * 14 12 11 17 17 H 1.48494 * 109.47162 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46569 * 119.99809 * 16 14 12 19 19 H 1.48497 * 109.47095 * 239.99936 * 16 14 12 20 20 H 1.09001 * 109.47024 * 60.00163 * 1 2 3 21 21 H 1.08996 * 109.47380 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47057 * 300.00267 * 1 2 3 23 23 H 1.07998 * 119.79457 * 180.02562 * 9 6 4 24 24 H 1.08005 * 119.92166 * 179.97438 * 10 9 6 25 25 H 0.97000 * 120.00072 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2092 0.0000 4 6 2.3563 1.8314 -1.1953 5 9 2.0469 1.2372 -2.3685 6 6 2.9976 3.0760 -1.1867 7 6 3.3255 3.7182 -2.4240 8 7 3.5855 4.2276 -3.4055 9 6 3.3200 3.6968 0.0303 10 6 3.0136 3.0966 1.2112 11 6 2.3677 1.8430 1.2220 12 6 2.0513 1.2219 2.4450 13 1 1.9607 0.1469 2.4973 14 6 1.8593 1.9982 3.5964 15 7 1.6494 3.2839 3.4903 16 14 1.9034 1.1950 5.2824 17 1 2.1550 -0.2606 5.1309 18 1 2.9891 1.8039 6.0923 19 1 0.6008 1.4034 5.9642 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 3.8143 4.6570 0.0285 24 1 3.2656 3.5810 2.1431 25 1 1.5169 3.8211 4.2870 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575648932.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:51 Heat of formation + Delta-G solvation = -46.616268 kcal Electronic energy + Delta-G solvation = -14327.388669 eV Core-core repulsion = 11606.439066 eV Total energy + Delta-G solvation = -2720.949604 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.02911 -38.51695 -36.53087 -35.39599 -34.00031 -30.24264 -28.99930 -26.68174 -25.63184 -22.24791 -21.18456 -18.19450 -18.04522 -16.23612 -15.73973 -15.63387 -15.12369 -14.68024 -14.05017 -13.71495 -13.47544 -12.77672 -12.74384 -12.51992 -12.10741 -12.00511 -11.55958 -11.29894 -11.23418 -10.97751 -10.60155 -10.49149 -10.03849 -9.60837 -8.99405 -7.85259 -7.65182 -7.31527 -4.90053 1.88760 2.37125 2.78151 2.83664 2.89944 3.55386 3.56251 3.71665 4.35720 4.65272 5.06281 5.20816 5.29425 6.00612 6.02537 6.09100 6.27951 6.42620 6.48085 6.68991 6.94756 7.08578 7.31067 7.47307 7.68001 7.96177 8.20212 8.26224 8.45328 8.70306 9.57090 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.034167 B = 0.009967 C = 0.008042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.317735 B = 2808.463433 C = 3480.733059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.316 6.316 3 C -0.070 4.070 4 C 0.166 3.834 5 F -0.149 7.149 6 C -0.214 4.214 7 C 0.288 3.712 8 N -0.493 5.493 9 C -0.034 4.034 10 C -0.165 4.165 11 C 0.128 3.872 12 C -0.404 4.404 13 H 0.099 0.901 14 C 0.070 3.930 15 N -0.756 5.756 16 Si 0.920 3.080 17 H -0.253 1.253 18 H -0.266 1.266 19 H -0.269 1.269 20 H 0.030 0.970 21 H 0.076 0.924 22 H 0.046 0.954 23 H 0.109 0.891 24 H 0.133 0.867 25 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.651 -2.441 4.331 5.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.232 6.232 3 C -0.116 4.116 4 C 0.144 3.856 5 F -0.128 7.128 6 C -0.221 4.221 7 C -0.022 4.022 8 N -0.172 5.172 9 C -0.055 4.055 10 C -0.185 4.185 11 C 0.123 3.877 12 C -0.430 4.430 13 H 0.117 0.883 14 C -0.154 4.154 15 N -0.377 5.377 16 Si 0.743 3.257 17 H -0.176 1.176 18 H -0.190 1.190 19 H -0.194 1.194 20 H 0.049 0.951 21 H 0.094 0.906 22 H 0.065 0.935 23 H 0.127 0.873 24 H 0.150 0.850 25 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.244 -1.628 2.909 3.559 hybrid contribution -0.475 -0.271 0.897 1.051 sum -1.719 -1.900 3.807 4.589 Atomic orbital electron populations 1.22862 0.82280 1.01189 0.99998 1.86028 1.18121 1.25046 1.94049 1.18258 1.10610 0.92383 0.90344 1.17824 0.97605 0.90222 0.79991 1.91381 1.91018 1.83562 1.46796 1.15235 1.21922 0.97280 0.87663 1.25730 0.91665 0.92395 0.92426 1.81059 1.14015 1.10985 1.11117 1.20203 0.97161 0.97754 0.90355 1.20901 1.02885 0.97672 0.97024 1.17804 0.87778 0.90826 0.91276 1.19923 1.35430 0.96246 0.91391 0.88343 1.26262 0.91813 0.94660 1.02692 1.69742 1.27775 1.06867 1.33365 0.86024 0.79173 0.81155 0.79364 1.17625 1.19026 1.19403 0.95132 0.90562 0.93503 0.87312 0.84955 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.13 101.05 1.12 1.70 15 2 O -0.32 -6.98 9.56 -18.86 -0.18 -7.16 15 3 C -0.07 -1.61 5.75 -38.36 -0.22 -1.83 15 4 C 0.17 3.78 7.28 -38.89 -0.28 3.50 15 5 F -0.15 -3.38 16.64 2.25 0.04 -3.34 15 6 C -0.21 -4.68 5.76 -106.50 -0.61 -5.30 15 7 C 0.29 6.36 14.95 -22.47 -0.34 6.02 15 8 N -0.49 -11.17 18.54 41.84 0.78 -10.40 15 9 C -0.03 -0.70 9.67 -39.59 -0.38 -1.08 15 10 C -0.17 -3.63 8.60 -39.34 -0.34 -3.96 15 11 C 0.13 2.96 5.57 -106.69 -0.59 2.37 15 12 C -0.40 -9.03 8.70 -37.89 -0.33 -9.36 15 13 H 0.10 2.18 7.65 -52.48 -0.40 1.78 15 14 C 0.07 1.44 5.15 -17.30 -0.09 1.35 15 15 N -0.76 -15.99 10.95 55.56 0.61 -15.38 15 16 Si 0.92 15.47 29.59 -169.99 -5.03 10.44 15 17 H -0.25 -4.29 7.11 56.52 0.40 -3.89 15 18 H -0.27 -4.40 7.11 56.52 0.40 -4.00 15 19 H -0.27 -4.48 7.11 56.52 0.40 -4.08 15 20 H 0.03 0.54 8.14 -51.93 -0.42 0.11 15 21 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 22 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 23 H 0.11 1.97 8.06 -52.49 -0.42 1.55 15 24 H 0.13 2.88 6.19 -52.48 -0.32 2.55 15 25 H 0.29 5.50 8.29 -40.82 -0.34 5.17 15 LS Contribution 243.77 15.07 3.67 3.67 Total: -1.00 -24.69 243.77 -3.73 -28.42 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -1.55 Total: 0.35 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -2.06 Total: -6.61 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 1.38 Total: -25.78 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.18 Total: -7.16 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.04 Total: -3.34 kcal Atomic # 14 Polarization: 15.47 SS G_CDS: -5.03 Total: 10.44 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -24.69 -3.73 -28.42 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575648932.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.193 kcal (2) G-P(sol) polarization free energy of solvation -24.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds