Wall clock time and date at job start Mon Mar 30 2020 02:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35718 * 117.00473 * 2 1 4 4 C 1.38299 * 120.19560 * 270.26002 * 3 2 1 5 5 F 1.35101 * 120.07954 * 0.02562 * 4 3 2 6 6 C 1.40016 * 119.84222 * 180.29615 * 4 3 2 7 7 C 1.43204 * 119.87797 * 179.71774 * 6 4 3 8 8 N 5.84126 * 111.66560 * 321.14679 * 2 1 3 9 9 C 1.40372 * 120.24027 * 359.69214 * 6 4 3 10 10 C 1.35966 * 120.40077 * 0.02649 * 9 6 4 11 11 C 1.41028 * 120.14915 * 359.97438 * 10 9 6 12 12 C 1.40773 * 120.11859 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00311 * 206.11918 * 12 11 10 14 14 C 1.40187 * 120.00233 * 25.84830 * 12 11 10 15 15 N 1.30705 * 119.99937 * 16.66146 * 14 12 11 16 16 Si 1.86803 * 119.99989 * 196.65930 * 14 12 11 17 17 H 1.48494 * 109.47162 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46569 * 119.99809 * 16 14 12 19 19 H 1.48497 * 109.47095 * 239.99936 * 16 14 12 20 20 H 1.09001 * 109.47024 * 60.00163 * 1 2 3 21 21 H 1.08996 * 109.47380 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47057 * 300.00267 * 1 2 3 23 23 H 1.07998 * 119.79457 * 180.02562 * 9 6 4 24 24 H 1.08005 * 119.92166 * 179.97438 * 10 9 6 25 25 H 0.97000 * 120.00072 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2092 0.0000 4 6 2.3563 1.8314 -1.1953 5 9 2.0469 1.2372 -2.3685 6 6 2.9976 3.0760 -1.1867 7 6 3.3255 3.7182 -2.4240 8 7 3.5855 4.2276 -3.4055 9 6 3.3200 3.6968 0.0303 10 6 3.0136 3.0966 1.2112 11 6 2.3677 1.8430 1.2220 12 6 2.0513 1.2219 2.4450 13 1 1.9607 0.1469 2.4973 14 6 1.8593 1.9982 3.5964 15 7 1.6494 3.2839 3.4903 16 14 1.9034 1.1950 5.2824 17 1 2.1550 -0.2606 5.1309 18 1 2.9891 1.8039 6.0923 19 1 0.6008 1.4034 5.9642 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 3.8143 4.6570 0.0285 24 1 3.2656 3.5810 2.1431 25 1 1.5169 3.8211 4.2870 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575648932.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:51 Heat of formation + Delta-G solvation = -58.873484 kcal Electronic energy + Delta-G solvation = -14327.920182 eV Core-core repulsion = 11606.439066 eV Total energy + Delta-G solvation = -2721.481117 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.80459 -40.20041 -38.22254 -37.11670 -35.65798 -31.93563 -30.68240 -28.31978 -27.21989 -23.94508 -22.88131 -19.90815 -19.72666 -17.93058 -17.44444 -17.24606 -16.83782 -16.30414 -15.68377 -15.30003 -15.05945 -14.51066 -14.42418 -14.21305 -13.79087 -13.62124 -13.01846 -12.93844 -12.75872 -12.55330 -12.15757 -12.03494 -11.64993 -11.17320 -10.64237 -9.56317 -9.37246 -8.90441 -6.60414 0.18021 0.67852 1.41926 1.47022 1.61144 1.79627 2.05821 2.17749 2.67750 3.01265 3.33862 3.48021 3.60858 4.38304 4.53500 4.66849 4.75220 4.80914 4.86836 5.05894 5.25888 5.37706 5.63232 5.77413 5.98998 6.28138 6.50525 6.58104 6.70778 7.01951 8.02174 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.034167 B = 0.009967 C = 0.008042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.317735 B = 2808.463433 C = 3480.733059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.333 6.333 3 C -0.081 4.081 4 C 0.152 3.848 5 F -0.153 7.153 6 C -0.221 4.221 7 C 0.296 3.704 8 N -0.506 5.506 9 C -0.025 4.025 10 C -0.174 4.174 11 C 0.105 3.895 12 C -0.418 4.418 13 H 0.094 0.906 14 C 0.041 3.959 15 N -0.774 5.774 16 Si 0.989 3.011 17 H -0.257 1.257 18 H -0.258 1.258 19 H -0.263 1.263 20 H 0.031 0.969 21 H 0.110 0.890 22 H 0.040 0.960 23 H 0.135 0.865 24 H 0.133 0.867 25 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.844 -2.544 5.684 6.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.250 6.250 3 C -0.127 4.127 4 C 0.130 3.870 5 F -0.131 7.131 6 C -0.228 4.228 7 C -0.014 4.014 8 N -0.185 5.185 9 C -0.046 4.046 10 C -0.194 4.194 11 C 0.100 3.900 12 C -0.443 4.443 13 H 0.112 0.888 14 C -0.182 4.182 15 N -0.396 5.396 16 Si 0.808 3.192 17 H -0.180 1.180 18 H -0.182 1.182 19 H -0.187 1.187 20 H 0.050 0.950 21 H 0.128 0.872 22 H 0.059 0.941 23 H 0.153 0.847 24 H 0.151 0.849 25 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.442 -1.717 4.241 4.797 hybrid contribution -0.476 -0.258 0.513 0.746 sum -1.917 -1.976 4.754 5.493 Atomic orbital electron populations 1.23039 0.80278 1.03393 0.99714 1.85961 1.20063 1.24855 1.94106 1.18410 1.11099 0.92672 0.90511 1.17985 0.98303 0.90764 0.79918 1.91361 1.91147 1.83707 1.46912 1.15297 1.22337 0.97184 0.87988 1.25712 0.91302 0.92064 0.92276 1.81060 1.14614 1.11479 1.11326 1.20403 0.96331 0.98428 0.89429 1.20923 1.03396 0.97621 0.97440 1.18107 0.88528 0.91650 0.91702 1.20105 1.35766 0.96301 0.92142 0.88798 1.26973 0.90870 0.94966 1.05403 1.69730 1.26860 1.07854 1.35120 0.85018 0.79459 0.79842 0.74885 1.17997 1.18205 1.18712 0.95023 0.87167 0.94122 0.84702 0.84925 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 11.13 113.37 1.26 2.33 15 2 O -0.33 -14.65 9.56 -90.40 -0.86 -15.51 15 3 C -0.08 -3.74 5.75 23.06 0.13 -3.61 15 4 C 0.15 6.95 7.28 22.72 0.17 7.12 15 5 F -0.15 -6.93 16.64 44.97 0.75 -6.18 15 6 C -0.22 -9.56 5.76 -21.08 -0.12 -9.69 15 7 C 0.30 12.85 14.95 88.33 1.32 14.17 15 8 N -0.51 -22.49 18.54 19.00 0.35 -22.14 15 9 C -0.03 -1.02 9.67 22.26 0.22 -0.81 15 10 C -0.17 -7.56 8.60 22.43 0.19 -7.37 15 11 C 0.10 4.85 5.57 -21.20 -0.12 4.73 15 12 C -0.42 -18.49 8.70 23.36 0.20 -18.29 15 13 H 0.09 4.14 7.65 -2.91 -0.02 4.12 15 14 C 0.04 1.61 5.15 85.33 0.44 2.05 15 15 N -0.77 -31.69 10.95 21.87 0.24 -31.45 15 16 Si 0.99 30.13 29.59 68.60 2.03 32.16 15 17 H -0.26 -7.91 7.11 99.48 0.71 -7.21 15 18 H -0.26 -7.53 7.11 99.48 0.71 -6.82 15 19 H -0.26 -7.72 7.11 99.48 0.71 -7.01 15 20 H 0.03 1.09 8.14 -2.39 -0.02 1.07 15 21 H 0.11 3.09 8.14 -2.39 -0.02 3.07 15 22 H 0.04 1.47 8.14 -2.39 -0.02 1.45 15 23 H 0.14 4.65 8.06 -2.91 -0.02 4.62 15 24 H 0.13 5.68 6.19 -2.91 -0.02 5.66 15 25 H 0.31 10.93 8.29 -92.71 -0.77 10.16 15 Total: -1.00 -50.79 243.77 7.43 -43.36 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.23 Total: 9.11 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 3.69 Total: -9.35 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.59 Total: -53.59 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.86 Total: -15.51 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 0.75 Total: -6.18 kcal Atomic # 14 Polarization: 30.13 SS G_CDS: 2.03 Total: 32.16 kcal Total: -50.79 7.43 -43.36 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575648932.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.510 kcal (2) G-P(sol) polarization free energy of solvation -50.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds