Wall clock time and date at job start Mon Mar 30 2020 02:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35572 * 116.99956 * 2 1 4 4 C 1.38816 * 120.05762 * 269.98103 * 3 2 1 5 5 F 1.35097 * 119.84446 * 359.97438 * 4 3 2 6 6 C 1.38038 * 120.30722 * 180.02562 * 4 3 2 7 7 C 1.40234 * 120.42187 * 359.97438 * 6 4 3 8 8 C 1.43205 * 119.94476 * 179.97438 * 7 6 4 9 9 N 6.71459 * 117.01451 * 359.67552 * 2 1 3 10 10 C 1.39000 * 120.10994 * 359.72831 * 7 6 4 11 11 C 1.40454 * 119.68841 * 0.54489 * 10 7 6 12 12 C 1.41229 * 120.20531 * 179.72457 * 11 10 7 13 13 H 1.07995 * 120.00034 * 205.23013 * 12 11 10 14 14 C 1.39905 * 119.99593 * 25.23346 * 12 11 10 15 15 N 1.30864 * 120.00628 * 26.57219 * 14 12 11 16 16 Si 1.86803 * 119.99569 * 206.57138 * 14 12 11 17 17 H 1.48503 * 109.47117 * 179.97438 * 16 14 12 18 18 H 1.48499 * 109.47314 * 299.99993 * 16 14 12 19 19 H 1.48505 * 109.47168 * 59.99936 * 16 14 12 20 20 H 1.09000 * 109.47151 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47291 * 300.00551 * 1 2 3 22 22 H 1.09000 * 109.47162 * 60.00276 * 1 2 3 23 23 H 1.08003 * 119.78346 * 179.97438 * 6 4 3 24 24 H 1.07999 * 120.15633 * 180.27573 * 10 7 6 25 25 H 0.97003 * 120.00110 * 5.88717 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2080 0.0000 4 6 2.3605 1.8273 -1.2015 5 9 2.0537 1.2232 -2.3703 6 6 2.9876 3.0570 -1.2075 7 6 3.3120 3.6945 -0.0013 8 6 3.9631 4.9699 -0.0195 9 7 4.4789 5.9819 -0.0339 10 6 2.9981 3.0930 1.2118 11 6 2.3652 1.8392 1.2234 12 6 2.0465 1.2154 2.4497 13 1 1.9506 0.1409 2.5001 14 6 1.8550 1.9896 3.5992 15 7 1.4558 3.2313 3.4929 16 14 2.1693 1.2506 5.2858 17 1 1.8959 2.2693 6.3313 18 1 1.2766 0.0812 5.4881 19 1 3.5857 0.8142 5.3790 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 3.2300 3.5310 -2.1472 24 1 3.2436 3.5854 2.1411 25 1 1.2107 3.5894 2.6254 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575649226.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:54 Heat of formation + Delta-G solvation = -49.947932 kcal Electronic energy + Delta-G solvation = -14332.000415 eV Core-core repulsion = 11610.906340 eV Total energy + Delta-G solvation = -2721.094076 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.06032 -38.73640 -36.85367 -35.57482 -34.13283 -29.98210 -29.25968 -26.49106 -25.42083 -22.40888 -21.61410 -19.14237 -17.18213 -16.76544 -16.05707 -15.28803 -15.14271 -14.31011 -14.16033 -13.71568 -13.60659 -13.19552 -13.05935 -12.82070 -12.55390 -11.73732 -11.62861 -11.48118 -11.01829 -10.85026 -10.63690 -10.54125 -10.05503 -9.43910 -8.96388 -8.08586 -7.83877 -7.54047 -4.86864 1.56123 2.24325 2.97363 3.02788 3.21548 3.21869 3.50363 3.76557 4.23361 4.51917 4.62056 5.06712 5.30737 5.85595 5.93072 6.02560 6.15514 6.20373 6.37393 6.70501 6.77633 7.11381 7.16140 7.34271 7.60479 7.62734 7.99343 8.05168 8.35240 8.61132 9.62433 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.021087 B = 0.013028 C = 0.008492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.519368 B = 2148.710448 C = 3296.292725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.317 6.317 3 C -0.051 4.051 4 C 0.126 3.874 5 F -0.151 7.151 6 C -0.247 4.247 7 C 0.018 3.982 8 C 0.278 3.722 9 N -0.455 5.455 10 C -0.159 4.159 11 C 0.090 3.910 12 C -0.475 4.475 13 H 0.094 0.906 14 C 0.035 3.965 15 N -0.771 5.771 16 Si 1.067 2.933 17 H -0.271 1.271 18 H -0.271 1.271 19 H -0.269 1.269 20 H 0.077 0.923 21 H 0.045 0.955 22 H 0.030 0.970 23 H 0.117 0.883 24 H 0.124 0.876 25 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.997 -3.967 -0.656 4.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.233 6.233 3 C -0.098 4.098 4 C 0.106 3.894 5 F -0.130 7.130 6 C -0.269 4.269 7 C 0.014 3.986 8 C -0.036 4.036 9 N -0.131 5.131 10 C -0.182 4.182 11 C 0.086 3.914 12 C -0.501 4.501 13 H 0.112 0.888 14 C -0.189 4.189 15 N -0.392 5.392 16 Si 0.889 3.111 17 H -0.195 1.195 18 H -0.196 1.196 19 H -0.194 1.194 20 H 0.096 0.904 21 H 0.064 0.936 22 H 0.049 0.951 23 H 0.135 0.865 24 H 0.142 0.858 25 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.137 -2.170 0.891 2.607 hybrid contribution -0.515 -0.586 -2.003 2.149 sum -1.651 -2.756 -1.112 3.400 Atomic orbital electron populations 1.22843 0.82061 1.01325 0.99891 1.85972 1.18181 1.25122 1.94043 1.18511 1.08682 0.92084 0.90493 1.17578 1.00185 0.91616 0.80002 1.91377 1.91435 1.83293 1.46906 1.19932 1.13593 0.96744 0.96626 1.15510 1.00931 0.87709 0.94403 1.26034 0.92584 0.92861 0.92166 1.81104 1.11002 1.11959 1.09064 1.21248 1.03396 0.98111 0.95419 1.17518 0.91074 0.90520 0.92264 1.20678 1.39112 0.97835 0.92510 0.88758 1.27321 0.91618 0.93808 1.06169 1.70530 1.22505 1.14390 1.31813 0.83584 0.78445 0.76386 0.72680 1.19535 1.19604 1.19432 0.90444 0.93615 0.95090 0.86533 0.85781 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.13 101.05 1.12 1.73 15 2 O -0.32 -6.97 9.54 -18.41 -0.18 -7.15 15 3 C -0.05 -1.17 5.76 -38.19 -0.22 -1.39 15 4 C 0.13 2.72 7.28 -39.44 -0.29 2.43 15 5 F -0.15 -3.16 17.09 2.25 0.04 -3.12 15 6 C -0.25 -5.01 9.71 -38.91 -0.38 -5.39 15 7 C 0.02 0.38 5.73 -106.94 -0.61 -0.23 15 8 C 0.28 5.66 15.31 -22.47 -0.34 5.32 15 9 N -0.46 -9.54 18.54 41.84 0.78 -8.76 15 10 C -0.16 -3.55 7.67 -38.47 -0.30 -3.85 15 11 C 0.09 2.11 5.30 -106.74 -0.57 1.54 15 12 C -0.48 -11.00 8.63 -37.82 -0.33 -11.33 15 13 H 0.09 2.18 7.72 -52.49 -0.41 1.78 15 14 C 0.04 0.78 4.90 -17.34 -0.09 0.70 15 15 N -0.77 -17.94 12.32 55.55 0.68 -17.25 15 16 Si 1.07 18.98 30.01 -169.99 -5.10 13.88 15 17 H -0.27 -4.85 7.11 56.52 0.40 -4.45 15 18 H -0.27 -4.57 7.11 56.52 0.40 -4.17 15 19 H -0.27 -4.67 7.11 56.52 0.40 -4.27 15 20 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 21 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.03 0.53 8.14 -51.93 -0.42 0.11 15 23 H 0.12 2.13 8.06 -52.48 -0.42 1.71 15 24 H 0.12 2.83 6.51 -52.49 -0.34 2.49 15 25 H 0.30 7.13 6.78 -40.82 -0.28 6.86 15 LS Contribution 243.75 15.07 3.67 3.67 Total: -1.00 -24.38 243.75 -3.61 -27.99 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -1.51 Total: 1.21 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -1.99 Total: -10.47 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 1.46 Total: -26.01 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.18 Total: -7.15 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.04 Total: -3.12 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.10 Total: 13.88 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -24.38 -3.61 -27.99 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649226.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.960 kcal (2) G-P(sol) polarization free energy of solvation -24.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds